phrog_11896 is made of 8 protein sequences and is annotated as "primosomal protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
173.75 299 156


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p335077 no NCBI prot ID no annotation VI_06841 Gammaproteobacteria_gi_415878485_11589_33294 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p186861 no NCBI prot ID no annotation VI_03028 Gammaproteobacteria_gi_550443072_1600311_1637871 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p366750 no NCBI prot ID no annotation VI_08077 Gammaproteobacteria_gi_419271843 Viruses.
p387778 no NCBI prot ID no annotation VI_06431 Gammaproteobacteria_gi_149110192 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p330804 no NCBI prot ID no annotation VI_12080 Gammaproteobacteria_gi_429122166_371_22495 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_007497_p11 YP_355346.1 gp11 NC_007497 Burkholderia phage Bcep176 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p264409 no NCBI prot ID no annotation VI_08103 Gammaproteobacteria_gi_419294142 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Lambdavirus; unclassified Lambdavirus.
p307410 no NCBI prot ID no annotation VI_11414 Gammaproteobacteria_gi_544880584_9_24941 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_2357 64 no annotation unknown function 5 5.08E-22 12.42
phrog_1343 111 no annotation unknown function 4 7.81E-17 7.23

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1032 replication initiation protein DNA, RNA and nucleotide metabolism 99.5 1.9E-18 1-93 / 1-90
phrog_10724 no annotation unknown function 92.8 0.016 37-73 / 28-64
phrog_12720 DNA binding protein DNA, RNA and nucleotide metabolism 94.5 0.0031 22-89 / 31-104
phrog_1456 DNA binding protein DNA, RNA and nucleotide metabolism 96.3 6.2E-05 32-91 / 5-63
phrog_15053 no annotation unknown function 93.6 0.0084 23-92 / 37-107
phrog_15967 no annotation unknown function 95.9 0.00024 20-89 / 107-177
phrog_1835 HTH DNA binding protein DNA, RNA and nucleotide metabolism 95.8 0.00026 21-88 / 50-120
phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 96.0 0.00018 22-78 / 28-88
phrog_22671 replication protein DNA, RNA and nucleotide metabolism 94.8 0.0021 12-91 / 46-140
phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 99.1 2.7E-14 17-98 / 15-96
phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 96.5 3.1E-05 17-85 / 45-117
phrog_391 replication initiation O-like DNA, RNA and nucleotide metabolism 100.0 6.1E-41 1-140 / 1-142
phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 98.6 3.9E-11 6-99 / 11-106
phrog_4617 replication initiation protein DNA, RNA and nucleotide metabolism 98.5 1.4E-10 21-95 / 17-99
phrog_6643 replication initiation protein DNA, RNA and nucleotide metabolism 98.9 1.2E-12 3-95 / 1-92
phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 97.9 1.3E-08 32-101 / 41-109
phrog_7882 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 94.3 0.0037 18-86 / 35-104
phrog_8102 replication initiation protein DNA, RNA and nucleotide metabolism 97.5 3.4E-07 32-92 / 39-94
phrog_8540 replication initiation O-like DNA, RNA and nucleotide metabolism 98.9 1.4E-12 1-96 / 1-97
phrog_9088 no annotation unknown function 90.1 0.063 39-87 / 61-110
phrog_9285 no annotation unknown function 94.0 0.0053 25-71 / 19-65

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF06970.10 Replication initiator protein A (RepA) N-terminus 1.8E-07 4-64 / 4-75
PF04492.12 Bacteriophage replication protein O 2E-06 15-74 / 22-83
PF16221.4 winged helix-turn-helix 6.6E-06 21-72 / 32-78
PF04358.12 DsrC like protein 1.2E-05 15-73 / 34-94
PF03428.12 Replication protein C N-terminal domain 2.3E-05 12-74 / 35-105
PF02319.19 E2F/DP family winged-helix DNA-binding domain 2.5E-05 41-73 / 24-56
PF13730.5 Helix-turn-helix domain 3E-05 18-70 / 3-52
PF05732.10 Firmicute plasmid replication protein (RepL) 4.2E-05 16-74 / 50-109
PF10007.8 Uncharacterized protein conserved in archaea (DUF2250) 4.7E-05 17-74 / 5-56
PF01726.15 LexA DNA binding domain 5.3E-05 19-74 / 5-60
PF05584.10 Sulfolobus plasmid regulatory protein 7.1E-05 17-74 / 3-52
PF08784.10 Replication protein A C terminal 7.6E-05 17-73 / 37-94
PF09114.9 Transcription factor MotA, activation domain 9.9E-05 16-73 / 12-64
PF08221.10 RNA polymerase III subunit RPC82 helix-turn-helix domain 0.00011 18-73 / 11-60
PF04079.15 Segregation and condensation complex subunit ScpB 0.00014 16-76 / 79-130
PF09012.9 FeoC like transcriptional regulator 0.00016 41-74 / 15-48
PF03551.13 Transcriptional regulator PadR-like family 0.00017 41-75 / 15-51
PF12802.6 MarR family 0.00019 41-74 / 22-55
PF03965.15 Penicillinase repressor 0.00023 20-74 / 3-57
PF14557.5 Putative AphA-like transcriptional regulator 0.00023 16-75 / 4-68
PF07381.10 Winged helix DNA-binding domain (DUF1495) 0.00023 17-74 / 6-68
PF02295.16 Adenosine deaminase z-alpha domain 0.00025 41-73 / 19-52
PF01090.18 Ribosomal protein S19e 0.00025 41-75 / 66-115
PF01978.18 Sugar-specific transcriptional regulator TrmB 0.00028 17-74 / 5-56
PF13463.5 Winged helix DNA-binding domain 0.00034 41-74 / 18-51
PF01047.21 MarR family 0.00036 41-74 / 18-51
PF08222.10 CodY helix-turn-helix domain 0.00043 41-74 / 5-38
PF01475.18 Ferric uptake regulator family 0.00043 17-74 / 4-61
PF04182.11 B-block binding subunit of TFIIIC 0.00044 41-74 / 19-52
PF13601.5 Winged helix DNA-binding domain 0.0005 41-74 / 15-48
PF02002.16 TFIIE alpha subunit 0.0005 21-75 / 13-61
PF03444.14 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 0.00051 41-74 / 25-58
PF15977.4 Winged helix-turn-helix DNA binding 0.00062 39-73 / 22-56
PF14394.5 Domain of unknown function (DUF4423) 0.00063 41-74 / 37-72
PF13412.5 Winged helix-turn-helix DNA-binding 0.00074 41-70 / 18-47
PF06163.10 Bacterial protein of unknown function (DUF977) 0.00079 41-74 / 27-60
PF09681.9 N-terminal phage replisome organiser (Phage_rep_org_N) 0.0008 41-73 / 54-86
PF02334.15 Replication terminator protein 0.00086 52-75 / 52-75
PF07106.12 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) 0.00089 41-74 / 17-52
PF05158.11 RNA polymerase Rpc34 subunit 0.00089 17-75 / 89-143
PF14277.5 Domain of unknown function (DUF4364) 0.00092 41-73 / 16-52
PF09202.10 Rio2, N-terminal 0.00096 18-74 / 4-58
PF11313.7 Protein of unknown function (DUF3116) 0.00096 49-75 / 36-62
PF10771.8 Winged helix-turn-helix domain (DUF2582) 0.00098 18-74 / 6-56
PF09824.8 ArsR transcriptional regulator 0.0011 20-74 / 17-62
PF12793.6 Sugar transport-related sRNA regulator N-term 0.0012 41-74 / 19-52
PF09904.8 Winged helix-turn helix 0.0012 41-73 / 22-54
PF13545.5 Crp-like helix-turn-helix domain 0.0013 40-72 / 27-59
PF01022.19 Bacterial regulatory protein, arsR family 0.0014 41-70 / 17-46
PF09639.9 YjcQ protein 0.0015 41-74 / 17-52
PF13034.5 Protein of unknown function (DUF3895) 0.0016 51-74 / 40-67
PF05491.12 Holliday junction DNA helicase ruvB C-terminus 0.0017 17-73 / 5-59
PF02082.19 Transcriptional regulator 0.0017 41-73 / 25-57
PF05331.10 Protein of unknown function (DUF742) 0.0017 41-74 / 54-87
PF14947.5 Winged helix-turn-helix 0.0017 41-73 / 17-49
PF14502.5 Helix-turn-helix domain 0.0021 41-73 / 7-39
PF16365.4 Ethanolamine utilization protein EutK C-terminus 0.0022 41-73 / 18-50
PF09339.9 IclR helix-turn-helix domain 0.0022 41-72 / 19-50
PF09857.8 Putative toxin of bacterial toxin-antitoxin pair 0.0023 17-73 / 2-62
PF12840.6 Helix-turn-helix domain 0.0026 41-73 / 24-53
PF07848.11 PaaX-like protein 0.0027 41-73 / 21-56
PF02387.14 IncFII RepA protein family 0.003 25-74 / 75-135
PF00392.20 Bacterial regulatory proteins, gntR family 0.0033 42-73 / 26-57
PF06969.15 HemN C-terminal domain 0.0036 41-73 / 21-54
PF10711.8 Hypothetical protein (DUF2513) 0.0037 42-75 / 20-57
PF01325.18 Iron dependent repressor, N-terminal DNA binding domain 0.0042 41-73 / 22-54
PF01418.16 Helix-turn-helix domain, rpiR family 0.0043 17-73 / 13-67
PF01638.16 HxlR-like helix-turn-helix 0.0046 41-74 / 20-54
PF08220.11 DeoR-like helix-turn-helix domain 0.0052 41-73 / 15-47
PF00325.19 Bacterial regulatory proteins, crp family 0.0064 42-70 / 4-32
PF08461.9 Ribonuclease R winged-helix domain 0.0065 41-73 / 13-50
PF04703.11 FaeA-like protein 0.0073 41-74 / 15-48
PF03297.14 S25 ribosomal protein 0.0076 41-73 / 57-89
PF16864.4 Dimerisation domain 0.0089 41-73 / 33-65

Annotations of the NCBI proteins of this PHROG


1:phiE125 gp60-like

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0045892 negative regulation of transcription, DNA-templated
GO:0005667 transcription factor complex
GO:0009378 four-way junction helicase activity
GO:0007131 reciprocal meiotic recombination
GO:0004674 protein serine/threonine kinase activity
GO:0009289 pilus
GO:0006260 DNA replication
GO:0005622 intracellular
GO:0006383 transcription by RNA polymerase III
GO:0006310 DNA recombination
GO:0003726 double-stranded RNA adenosine deaminase activity
GO:0003677 DNA binding
GO:0006468 protein phosphorylation
GO:0006274 DNA replication termination
GO:0005840 ribosome
GO:0003700 DNA binding transcription factor activity
GO:0004252 serine-type endopeptidase activity
GO:0006281 DNA repair
GO:0006412 translation
GO:0051304 chromosome separation
GO:0006355 regulation of transcription, DNA-templated
GO:0003735 structural constituent of ribosome
GO:0003723 RNA binding
GO:0006508 proteolysis
GO:0005666 DNA-directed RNA polymerase III complex
GO:0005524 ATP binding
GO:0006276 plasmid maintenance

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