phrog_12540 is made of 8 protein sequences and is annotated as "unknown function"
Functional category: unknown function


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
140 173 153


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p392385 no NCBI prot ID no annotation VI_04218 Alphaproteobacteria_gi_399063385 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p180724 no NCBI prot ID no annotation VI_04291 Alphaproteobacteria_gi_486400373 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p85921 no NCBI prot ID no annotation VI_04206 Alphaproteobacteria_gi_359790220 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
NC_020489_p3 YP_007518385.1 hypothetical protein NC_020489 Rhodobacter phage RcapNL Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p288037 no NCBI prot ID no annotation VI_04183 Alphaproteobacteria_gi_306840416 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p427609 no NCBI prot ID no annotation VI_04235 Alphaproteobacteria_gi_484351429 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p416085 no NCBI prot ID no annotation VI_04237 Alphaproteobacteria_gi_484351542 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p212716 no NCBI prot ID no annotation VI_04312 Alphaproteobacteria_gi_567406774 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_9 2977 terminase large subunit head and packaging 8 3.31E-20 10.6

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 92.8 0.016 13-50 / 126-162
phrog_1740 RNA polymerase sigma factor transcription regulation 94.3 0.0039 15-55 / 128-168
phrog_20467 HNH endonuclease DNA, RNA and nucleotide metabolism 91.5 0.033 11-51 / 52-92
phrog_309 terminase small subunit head and packaging 96.8 8.2E-06 8-78 / 5-76
phrog_3512 sigma factor transcription regulation 91.9 0.027 14-52 / 67-105
phrog_3855 HTH DNA binding protein DNA, RNA and nucleotide metabolism 94.7 0.0023 18-51 / 68-101
phrog_645 Rnase E DNA, RNA and nucleotide metabolism 95.5 0.00056 14-94 / 20-108
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 95.6 0.00051 3-57 / 42-96
phrog_6831 transcriptional regulator transcription regulation 95.6 0.00046 19-51 / 5-37

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF07141.10 Putative bacteriophage terminase small subunit 4.6E-08 29-104 / 18-124
PF16677.4 DNA-packaging protein gp3 1.4E-05 28-109 / 7-97
PF07750.10 GcrA cell cycle regulator 9.3E-05 27-67 / 3-44
PF05331.10 Protein of unknown function (DUF742) 0.00013 25-70 / 37-81
PF12759.6 InsA C-terminal domain 0.00013 29-66 / 8-45
PF09607.9 Brinker DNA-binding domain 0.00015 27-69 / 6-52
PF00292.17 'Paired box' domain 0.00018 25-68 / 16-59
PF07638.10 ECF sigma factor 0.00023 27-70 / 134-177
PF08822.10 Protein of unknown function (DUF1804) 0.00025 27-69 / 3-46
PF01710.15 Transposase 0.00028 27-68 / 3-44
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 0.00029 34-69 / 5-40
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00037 27-70 / 40-83
PF02796.14 Helix-turn-helix domain of resolvase 0.00038 34-65 / 13-44
PF13011.5 leucine-zipper of insertion element IS481 0.00041 27-70 / 8-52
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.00048 27-66 / 12-50
PF04218.12 CENP-B N-terminal DNA-binding domain 0.00051 30-69 / 10-50
PF13936.5 Helix-turn-helix domain 0.00065 29-65 / 7-43
PF05344.10 Domain of Unknown Function (DUF746) 0.00068 35-70 / 5-40
PF11427.7 Tc3 transposase 0.00078 34-68 / 12-46
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.0011 40-70 / 17-47
PF10668.8 Phage terminase small subunit 0.0011 31-70 / 8-50
PF10654.8 Protein of unknown function (DUF2481) 0.0013 34-67 / 72-105
PF13309.5 HTH domain 0.0014 43-64 / 42-63
PF04545.15 Sigma-70, region 4 0.0017 27-68 / 5-50
PF04552.12 Sigma-54, DNA binding domain 0.0017 24-67 / 28-73
PF06322.10 Phage NinH protein 0.0017 40-69 / 14-43
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0019 24-66 / 86-131
PF08281.11 Sigma-70, region 4 0.0018 29-67 / 13-51
PF07374.10 Protein of unknown function (DUF1492) 0.0026 29-68 / 58-97
PF04936.11 Protein of unknown function (DUF658) 0.0029 42-67 / 14-39
PF01527.19 Transposase 0.0031 29-67 / 7-46
PF14493.5 Helix-turn-helix domain 0.0033 36-70 / 6-40
PF13518.5 Helix-turn-helix domain 0.0033 35-70 / 5-39
PF16509.4 TrfB plasmid transcriptional repressor 0.0035 28-68 / 17-57
PF06530.11 Phage antitermination protein Q 0.0036 28-70 / 65-107
PF06627.10 Protein of unknown function (DUF1153) 0.0039 27-70 / 30-74
PF13412.5 Winged helix-turn-helix DNA-binding 0.0039 41-68 / 16-43
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.0039 27-70 / 18-61
PF05225.15 helix-turn-helix, Psq domain 0.0041 39-67 / 13-42
PF13384.5 Homeodomain-like domain 0.0044 35-66 / 10-41
PF13022.5 Helix-turn-helix of insertion element transposase 0.0044 42-65 / 25-48
PF02001.15 Protein of unknown function DUF134 0.0048 26-70 / 31-75
PF11242.7 Protein of unknown function (DUF2774) 0.0055 36-70 / 8-42
PF08765.10 Mor transcription activator family 0.0059 35-68 / 66-98
PF16264.4 SatD family (SatD) 0.0062 26-70 / 150-199
PF01371.18 Trp repressor protein 0.0075 38-68 / 44-74
PF01381.21 Helix-turn-helix 0.0079 40-65 / 7-32
PF04967.11 HTH DNA binding domain 0.0079 43-68 / 24-49
PF02954.18 Bacterial regulatory protein, Fis family 0.0079 41-65 / 15-39
PF17443.1 Uncharacterized protein pXO2-72 0.0084 41-67 / 7-33

Annotations of the NCBI proteins of this PHROG


1:hypothetical protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0003677 DNA binding
GO:0006310 DNA recombination
GO:0043565 sequence-specific DNA binding
GO:0004803 transposase activity
GO:0005524 ATP binding
GO:0000150 recombinase activity
GO:0006313 transposition, DNA-mediated
GO:0003700 DNA binding transcription factor activity
GO:0019069 viral capsid assembly
GO:0060567 negative regulation of DNA-templated transcription, termination
GO:0016987 sigma factor activity
GO:0006355 regulation of transcription, DNA-templated
GO:0006352 DNA-templated transcription, initiation
GO:0005622 intracellular

Loading in process