phrog_13059 is made of 8 protein sequences and is annotated as "HTH DNA binding protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
64.25 68 62


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
MG897800_p12 AVJ48084.1 hypothetical protein MG897800 Pseudomonas phage vB_PaeS_C1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
KM434185_p48 AIW01699.1 hypothetical protein KM434185 Pseudomonas phage vB_Pae_PS9N Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; Pseudomonas virus Kakheti25.
NC_007806_p35 YP_001293442.1 hypothetical protein ORF035 NC_007806 Pseudomonas phage 73 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus.
NC_018278_p36 YP_006560787.1 transcriptional regulator NC_018278 Burkholderia phage KL1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kilunavirus.
KR537872_p37 AKI28838.1 transcriptional regulator KR537872 Stenotrophomonas phage vB_SmaS-DLP_1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
NC_024381_p34 YP_009044369.1 hypothetical protein NC_024381 Pseudomonas phage vB_PaeS_SCH_Ab26 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus.
NC_029019_p37 YP_009219194.1 transcriptional regulator NC_029019 Stenotrophomonas phage vB_SmaS-DLP_2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus; unclassified Septimatrevirus.
NC_017864_p37 YP_006299901.1 hypothetical protein NC_017864 Pseudomonas phage vB_Pae-Kakheti25 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_3022 47 DNA primase DNA, RNA and nucleotide metabolism 8 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1206 terminase small subunit head and packaging 92.9 0.014 17-37 / 18-38
phrog_30822 no annotation unknown function 94.6 0.0025 14-39 / 15-40
phrog_6156 endonuclease DNA, RNA and nucleotide metabolism 93.6 0.008 14-40 / 32-58
phrog_9759 DNA binding protein DNA, RNA and nucleotide metabolism 95.6 0.00046 11-39 / 13-41

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 1.1E-07 8-46 / 10-47
PF04645.11 Protein of unknown function, DUF603 2.2E-07 6-46 / 5-47
PF14590.5 Domain of unknown function (DUF4447) 4.2E-07 9-46 / 8-44
PF01381.21 Helix-turn-helix 6.8E-07 19-63 / 7-48
PF05339.10 Protein of unknown function (DUF739) 1.2E-06 15-46 / 10-40
PF00356.20 Bacterial regulatory proteins, lacI family 1.8E-06 25-46 / 2-23
PF13413.5 Helix-turn-helix domain 3.5E-06 19-46 / 7-33
PF13443.5 Cro/C1-type HTH DNA-binding domain 1.2E-05 23-45 / 11-34
PF05269.10 Bacteriophage CII protein 1.3E-05 18-45 / 20-46
PF07022.12 Bacteriophage CI repressor helix-turn-helix domain 1.4E-05 23-46 / 12-36
PF12844.6 Helix-turn-helix domain 1.4E-05 20-46 / 11-36
PF13560.5 Helix-turn-helix domain 2.3E-05 15-46 / 8-38
PF13744.5 Helix-turn-helix domain 3E-05 17-63 / 27-71
PF15731.4 Antitoxin component of bacterial toxin-antitoxin system, MqsA 4.1E-05 19-46 / 80-106
PF08667.9 BetR domain 4.5E-05 12-46 / 9-46
PF04814.12 Hepatocyte nuclear factor 1 (HNF-1), N terminus 7.8E-05 23-62 / 127-164
PF10654.8 Protein of unknown function (DUF2481) 0.00012 20-46 / 79-104
PF15943.4 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 0.00022 24-46 / 10-31
PF12116.7 Stage III sporulation protein D 0.0003 23-46 / 20-43
PF08535.9 KorB domain 0.00059 23-46 / 4-27
PF00376.22 MerR family regulatory protein 0.001 26-46 / 3-23
PF06806.11 Putative excisionase (DUF1233) 0.0011 23-44 / 10-31
PF17443.1 Uncharacterized protein pXO2-72 0.0013 23-45 / 9-31
PF13693.5 Winged helix-turn-helix DNA-binding 0.0015 17-46 / 11-39
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 0.0015 23-46 / 14-37
PF06322.10 Phage NinH protein 0.0015 23-46 / 17-40
PF02042.14 RWP-RK domain 0.002 23-46 / 13-36
PF14549.5 DNA-binding transcriptional regulator Cro 0.0019 24-42 / 11-29
PF04552.12 Sigma-54, DNA binding domain 0.0021 23-46 / 49-72
PF07278.10 Protein of unknown function (DUF1441) 0.0023 23-46 / 2-25
PF13411.5 MerR HTH family regulatory protein 0.0025 25-45 / 3-23
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 0.0025 23-44 / 4-25
PF13591.5 MerR HTH family regulatory protein 0.0026 24-45 / 2-23
PF07141.10 Putative bacteriophage terminase small subunit 0.0026 23-46 / 32-55
PF01371.18 Trp repressor protein 0.003 23-46 / 49-72
PF02954.18 Bacterial regulatory protein, Fis family 0.0034 23-43 / 17-37
PF02376.14 CUT domain 0.0041 14-46 / 13-45
PF04936.11 Protein of unknown function (DUF658) 0.0045 23-46 / 15-38
PF09035.9 Excisionase from transposon Tn916 0.0048 23-43 / 16-36
PF07037.10 Putative transcription regulator (DUF1323) 0.0068 24-44 / 2-22
PF10668.8 Phage terminase small subunit 0.0072 23-45 / 23-45
PF10743.8 Regulatory phage protein cox 0.0077 23-46 / 12-35
PF12759.6 InsA C-terminal domain 0.0082 23-43 / 22-42
PF06892.10 Phage regulatory protein CII (CP76) 0.0082 23-46 / 20-43
PF12728.6 Helix-turn-helix domain 0.0091 24-45 / 3-25
PF05344.10 Domain of Unknown Function (DUF746) 0.0097 23-45 / 13-35
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0091 23-46 / 108-131
PF08765.10 Mor transcription activator family 0.0097 23-46 / 73-96

Annotations of the NCBI proteins of this PHROG


5:hypothetical protein 3:transcriptional regulator

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0045892 negative regulation of transcription, DNA-templated
GO:0019069 viral capsid assembly
GO:0006355 regulation of transcription, DNA-templated
GO:0005622 intracellular
GO:0045893 positive regulation of transcription, DNA-templated
GO:0003677 DNA binding
GO:0043565 sequence-specific DNA binding
GO:0005634 nucleus
GO:0005524 ATP binding
GO:0003700 DNA binding transcription factor activity

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