phrog_13390 is made of 7 protein sequences and is annotated as "unknown function"
Functional category: unknown function


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
186.29 350 152


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p260037 no NCBI prot ID no annotation VI_05900 Clostridia_gi_544978902 Viruses.
p316803 no NCBI prot ID no annotation VI_06048 Clostridia_gi_545022922_47477_71257 Viruses.
p350817 no NCBI prot ID no annotation VI_06027 Clostridia_gi_545019489_10107_29800 Viruses.
p343186 no NCBI prot ID no annotation VI_05962 Clostridia_gi_544997337_10177_31046 Viruses.
p414601 no NCBI prot ID no annotation VI_06063 Clostridia_gi_545030500 Viruses.
p322810 no NCBI prot ID no annotation VI_05849 Clostridia_gi_544963344_8075_31204 Viruses.
p260012 no NCBI prot ID no annotation VI_06031 Clostridia_gi_545019888 Viruses.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_44 1487 single strand DNA binding protein DNA, RNA and nucleotide metabolism 6 1.13E-16 7.07
phrog_15053 6 no annotation unknown function 5 4.07E-30 20.51

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 98.4 2.9E-10 27-128 / 150-256
phrog_19120 no annotation unknown function 92.8 0.016 62-102 / 2-42
phrog_25071 no annotation unknown function 94.0 0.0056 62-99 / 11-48
phrog_2562 replication initiation protein DNA, RNA and nucleotide metabolism 94.0 0.0055 29-101 / 189-263
phrog_25863 replication protein DNA, RNA and nucleotide metabolism 93.1 0.013 61-118 / 64-119
phrog_4016 replication initiation protein DNA, RNA and nucleotide metabolism 96.3 6E-05 49-129 / 27-107
phrog_6251 replisome organizer DnaA-like DNA, RNA and nucleotide metabolism 90.7 0.048 27-98 / 187-277
phrog_6493 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 95.4 0.00073 32-122 / 152-244

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF06970.10 Replication initiator protein A (RepA) N-terminus 5.7E-08 3-72 / 1-75
PF09681.9 N-terminal phage replisome organiser (Phage_rep_org_N) 5.4E-07 4-97 / 1-98
PF07261.10 Replication initiation and membrane attachment 1.8E-06 211-268 / 10-67
PF04492.12 Bacteriophage replication protein O 5.8E-06 2-82 / 7-83
PF01726.15 LexA DNA binding domain 8.7E-05 48-82 / 25-60
PF02319.19 E2F/DP family winged-helix DNA-binding domain 0.00028 48-82 / 23-57
PF05732.10 Firmicute plasmid replication protein (RepL) 0.00028 47-82 / 74-109
PF04358.12 DsrC like protein 0.00037 18-82 / 37-95
PF00392.20 Bacterial regulatory proteins, gntR family 0.00046 48-82 / 24-58
PF08222.10 CodY helix-turn-helix domain 0.00064 49-82 / 5-38
PF03428.12 Replication protein C N-terminal domain 0.00067 18-82 / 41-105
PF16221.4 winged helix-turn-helix 0.00074 49-80 / 47-78
PF13730.5 Helix-turn-helix domain 0.00083 18-78 / 3-52
PF08784.10 Replication protein A C terminal 0.00091 47-82 / 57-95
PF09012.9 FeoC like transcriptional regulator 0.00091 49-82 / 15-48
PF15977.4 Winged helix-turn-helix DNA binding 0.00094 47-82 / 22-57
PF14502.5 Helix-turn-helix domain 0.0014 47-82 / 5-40
PF10007.8 Uncharacterized protein conserved in archaea (DUF2250) 0.0015 49-82 / 23-56
PF13545.5 Crp-like helix-turn-helix domain 0.0017 47-80 / 26-59
PF07453.12 NUMOD1 domain 0.0019 41-69 / 12-40
PF03444.14 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 0.0021 48-82 / 24-58
PF08221.10 RNA polymerase III subunit RPC82 helix-turn-helix domain 0.0022 49-81 / 28-60
PF03551.13 Transcriptional regulator PadR-like family 0.0025 47-82 / 13-50
PF03965.15 Penicillinase repressor 0.0035 49-82 / 19-57
PF02295.16 Adenosine deaminase z-alpha domain 0.0036 48-82 / 18-53
PF12802.6 MarR family 0.0039 49-82 / 22-55
PF01325.18 Iron dependent repressor, N-terminal DNA binding domain 0.0039 48-82 / 21-55
PF09339.9 IclR helix-turn-helix domain 0.004 49-80 / 19-50
PF05584.10 Sulfolobus plasmid regulatory protein 0.0044 49-82 / 19-52
PF10771.8 Winged helix-turn-helix domain (DUF2582) 0.0051 48-82 / 22-56
PF14394.5 Domain of unknown function (DUF4423) 0.0051 49-82 / 37-72
PF02082.19 Transcriptional regulator 0.0052 49-82 / 25-58
PF06163.10 Bacterial protein of unknown function (DUF977) 0.0055 49-82 / 27-60
PF12793.6 Sugar transport-related sRNA regulator N-term 0.0061 48-82 / 18-52
PF07106.12 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) 0.0067 48-82 / 16-52
PF04182.11 B-block binding subunit of TFIIIC 0.0068 48-82 / 18-52
PF07381.10 Winged helix DNA-binding domain (DUF1495) 0.0071 48-82 / 24-68
PF13601.5 Winged helix DNA-binding domain 0.0075 49-82 / 15-48
PF13412.5 Winged helix-turn-helix DNA-binding 0.0079 49-78 / 18-47
PF09114.9 Transcription factor MotA, activation domain 0.0082 49-82 / 31-65
PF11313.7 Protein of unknown function (DUF3116) 0.0082 57-82 / 36-61
PF01978.18 Sugar-specific transcriptional regulator TrmB 0.0084 49-82 / 23-56

Annotations of the NCBI proteins of this PHROG


no RefSeq proteins in this PHROG (only proteins from VirSorter contigs)

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0005667 transcription factor complex
GO:0004252 serine-type endopeptidase activity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0006260 DNA replication
GO:0003723 RNA binding
GO:0006355 regulation of transcription, DNA-templated
GO:0007131 reciprocal meiotic recombination
GO:0003677 DNA binding
GO:0003726 double-stranded RNA adenosine deaminase activity
GO:0006508 proteolysis
GO:0003700 DNA binding transcription factor activity
GO:0006276 plasmid maintenance

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