phrog_13972 is made of 7 protein sequences and is annotated as "DNA ligase"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
70.14 94 75


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_020079_p62 YP_007348430.1 hypothetical protein NC_020079 Escherichia phage phAPEC8 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phapecoctavirus; Escherichia virus phAPEC8.
KX552041_p47 AOQ27201.1 hypothetical protein KX552041 Escherichia phage ESCO13 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phapecoctavirus.
KX664695_p45 AOT23434.1 hypothetical protein KX664695 Escherichia phage ESCO5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phapecoctavirus; Escherichia virus ESCO5.
NC_017972_p235 YP_006382765.1 hypothetical protein NC_017972 Pseudomonas phage Lu11 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
NC_022096_p232 YP_008433563.1 hypothetical protein NC_022096 Pseudomonas phage PaBG Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Baikalvirus; Pseudomonas virus PaBG.
KY984068_p5 ARW58645.1 hypothetical protein KY984068 Erwinia phage vB_EamM_Y3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Sasquatchvirus; Erwinia virus Y3.
KY448244_p5 AQT28492.1 putative DNA ligase KY448244 Erwinia phage vB_EamM_Yoloswag Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Yoloswagvirus; Erwinia virus Yoloswag.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_24460 3 no annotation unknown function 3 0 1000
phrog_26881 3 no annotation unknown function 3 0 1000
phrog_16240 6 portal protein head and packaging 2 5.99E-14 4.34
phrog_21488 4 no annotation unknown function 2 1.20E-14 5.04
phrog_17415 5 terminase large subunit head and packaging 2 3.00E-14 4.65

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_22955 no annotation unknown function 97.3 8.2E-07 35-73 / 46-82
phrog_26056 no annotation unknown function 91.9 0.028 41-73 / 3-33

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF12760.6 Transposase zinc-ribbon domain 1.1E-08 37-76 / 8-46
PF08271.11 TFIIB zinc-binding 1.6E-08 49-90 / 2-41
PF08274.11 PhnA Zinc-Ribbon 1.9E-07 48-78 / 3-29
PF08792.9 A2L zinc ribbon domain 2.5E-07 47-79 / 3-32
PF09538.9 Protein of unknown function (FYDLN_acid) 7E-07 45-82 / 7-40
PF03811.12 InsA N-terminal domain 1.1E-06 47-75 / 5-35
PF14803.5 Nudix N-terminal 1.2E-06 49-78 / 2-32
PF14205.5 Cysteine-rich KTR 1.4E-06 47-83 / 3-42
PF07754.10 Domain of unknown function (DUF1610) 1.5E-06 50-76 / 1-24
PF03966.15 Trm112p-like protein 1.6E-06 46-80 / 6-37
PF09151.9 Domain of unknown function (DUF1936) 2.6E-06 49-77 / 1-33
PF09297.10 NADH pyrophosphatase zinc ribbon domain 3.5E-06 47-78 / 3-31
PF11781.7 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 4.3E-06 46-78 / 3-31
PF06044.11 Dam-replacing family 4.6E-06 38-81 / 22-66
PF13453.5 Transcription factor zinc-finger 5.2E-06 49-81 / 1-32
PF01096.17 Transcription factor S-II (TFIIS) 7.5E-06 49-78 / 2-36
PF02150.15 RNA polymerases M/15 Kd subunit 8.1E-06 48-80 / 2-29
PF09862.8 Protein of unknown function (DUF2089) 1.7E-05 50-80 / 1-24
PF11023.7 Zinc-ribbon containing domain 2.2E-05 47-90 / 67-105
PF09723.9 Zinc ribbon domain 3E-05 47-78 / 5-34
PF03604.12 DNA directed RNA polymerase, 7 kDa subunit 5.3E-05 49-79 / 2-28
PF01780.18 Ribosomal L37ae protein family 6.1E-05 46-82 / 32-65
PF14446.5 Prokaryotic RING finger family 1 8.6E-05 47-82 / 4-34
PF09526.9 Probable metal-binding protein (DUF2387) 0.00013 44-83 / 5-46
PF10122.8 Mu-like prophage protein Com 0.00015 47-79 / 4-34
PF05129.12 Transcription elongation factor Elf1 like 0.00017 45-81 / 19-58
PF07282.10 Putative transposase DNA-binding domain 0.00066 46-80 / 28-60
PF04216.11 Protein involved in formate dehydrogenase formation 0.0008 46-56 / 171-181
PF01667.16 Ribosomal protein S27 0.00086 47-80 / 7-38
PF06827.13 Zinc finger found in FPG and IleRS 0.00088 48-75 / 2-28
PF09845.8 Zn-ribbon containing protein 0.0012 48-79 / 2-30
PF16919.4 Protein kinase G rubredoxin domain 0.0014 46-82 / 84-121
PF13240.5 zinc-ribbon domain 0.0016 49-77 / 1-23
PF13719.5 zinc-ribbon domain 0.0016 48-78 / 3-35
PF07295.10 Zinc-ribbon containing domain 0.0023 46-77 / 113-141
PF01155.18 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 0.0029 45-78 / 68-96
PF08273.11 Zinc-binding domain of primase-helicase 0.003 48-75 / 4-31
PF15616.5 TerY-C metal binding domain 0.0031 46-81 / 74-116
PF10058.8 Predicted integral membrane zinc-ribbon metal-binding protein 0.0033 47-76 / 19-49
PF07191.11 zinc-ribbons 0.0038 47-57 / 16-26
PF02701.14 Dof domain, zinc finger 0.0047 47-81 / 3-41
PF06677.11 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) 0.0051 45-74 / 13-38
PF16866.4 PHD-finger 0.0073 47-81 / 4-43
PF14149.5 YhfH-like protein 0.0083 45-58 / 11-24

Annotations of the NCBI proteins of this PHROG


6:hypothetical protein 1:DNA ligase

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0003676 nucleic acid binding
GO:0046872 metal ion binding
GO:0003735 structural constituent of ribosome
GO:0005737 cytoplasm
GO:0006355 regulation of transcription, DNA-templated
GO:0006412 translation
GO:0005887 integral component of plasma membrane
GO:0005622 intracellular
GO:0016151 nickel cation binding
GO:0006351 transcription, DNA-templated
GO:0016787 hydrolase activity
GO:0004386 helicase activity
GO:0051604 protein maturation
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0005840 ribosome
GO:0006313 transposition, DNA-mediated
GO:0008270 zinc ion binding
GO:0003896 DNA primase activity
GO:0003677 DNA binding

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