ID |
Definition |
Evalue |
posQ/posS |
PF07638.10 |
ECF sigma factor |
2.3E-08 |
4-41 / 134-171 |
PF07750.10 |
GcrA cell cycle regulator |
2.2E-08 |
5-42 / 4-42 |
PF05331.10 |
Protein of unknown function (DUF742) |
5.7E-08 |
4-41 / 39-75 |
PF03333.12 |
Adhesin biosynthesis transcription regulatory protein |
6.3E-08 |
7-41 / 43-77 |
PF12759.6 |
InsA C-terminal domain |
8.2E-08 |
7-41 / 9-43 |
PF01710.15 |
Transposase |
2.6E-07 |
5-41 / 4-40 |
PF07141.10 |
Putative bacteriophage terminase small subunit |
2.5E-07 |
11-42 / 23-54 |
PF08822.10 |
Protein of unknown function (DUF1804) |
3.3E-07 |
5-41 / 4-41 |
PF00292.17 |
'Paired box' domain |
3.8E-07 |
7-41 / 21-55 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
8.1E-07 |
15-41 / 9-35 |
PF09607.9 |
Brinker DNA-binding domain |
1E-06 |
8-41 / 10-47 |
PF06530.11 |
Phage antitermination protein Q |
1.1E-06 |
6-40 / 66-100 |
PF13936.5 |
Helix-turn-helix domain |
1.3E-06 |
12-41 / 13-42 |
PF07374.10 |
Protein of unknown function (DUF1492) |
1.5E-06 |
7-40 / 59-92 |
PF02796.14 |
Helix-turn-helix domain of resolvase |
1.7E-06 |
16-42 / 18-44 |
PF04545.15 |
Sigma-70, region 4 |
1.6E-06 |
17-40 / 22-45 |
PF08281.11 |
Sigma-70, region 4 |
2E-06 |
16-41 / 23-48 |
PF16509.4 |
TrfB plasmid transcriptional repressor |
2.1E-06 |
11-41 / 23-53 |
PF12824.6 |
Mitochondrial ribosomal protein subunit L20 |
2.1E-06 |
6-41 / 91-129 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
2.7E-06 |
18-41 / 18-41 |
PF04297.13 |
Putative helix-turn-helix protein, YlxM / p13 like |
2.9E-06 |
6-40 / 20-54 |
PF04552.12 |
Sigma-54, DNA binding domain |
3.3E-06 |
16-42 / 45-71 |
PF05344.10 |
Domain of Unknown Function (DUF746) |
4E-06 |
17-41 / 10-34 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
4.9E-06 |
20-41 / 24-45 |
PF04936.11 |
Protein of unknown function (DUF658) |
0.00013 |
18-42 / 87-111 |
PF10975.7 |
Protein of unknown function (DUF2802) |
4.7E-06 |
10-39 / 34-63 |
PF02001.15 |
Protein of unknown function DUF134 |
5.1E-06 |
11-40 / 39-68 |
PF13542.5 |
Helix-turn-helix domain of transposase family ISL3 |
5.9E-06 |
17-42 / 25-49 |
PF10654.8 |
Protein of unknown function (DUF2481) |
6.6E-06 |
17-41 / 78-102 |
PF10668.8 |
Phage terminase small subunit |
8E-06 |
19-41 / 22-44 |
PF13011.5 |
leucine-zipper of insertion element IS481 |
8.3E-06 |
17-41 / 22-46 |
PF08765.10 |
Mor transcription activator family |
8.1E-06 |
18-42 / 71-95 |
PF11427.7 |
Tc3 transposase |
9.2E-06 |
17-41 / 18-42 |
PF16264.4 |
SatD family (SatD) |
9E-06 |
18-41 / 170-193 |
PF06322.10 |
Phage NinH protein |
1.5E-05 |
18-41 / 15-38 |
PF06413.10 |
Neugrin |
1.4E-05 |
4-41 / 11-51 |
PF16677.4 |
DNA-packaging protein gp3 |
2.9E-05 |
18-41 / 28-51 |
PF07453.12 |
NUMOD1 domain |
3.2E-05 |
20-39 / 20-39 |
PF05225.15 |
helix-turn-helix, Psq domain |
3.4E-05 |
18-41 / 15-39 |
PF13384.5 |
Homeodomain-like domain |
3.5E-05 |
17-41 / 15-39 |
PF08535.9 |
KorB domain |
3.5E-05 |
19-41 / 3-25 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
3.3E-05 |
20-40 / 9-29 |
PF14493.5 |
Helix-turn-helix domain |
3.6E-05 |
17-41 / 10-34 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
4E-05 |
19-42 / 16-39 |
PF13411.5 |
MerR HTH family regulatory protein |
3.9E-05 |
22-40 / 3-21 |
PF15978.4 |
Tn7-like transposition protein D |
3.9E-05 |
18-41 / 202-225 |
PF01381.21 |
Helix-turn-helix |
4.6E-05 |
18-41 / 8-31 |
PF00356.20 |
Bacterial regulatory proteins, lacI family |
5.7E-05 |
24-39 / 4-19 |
PF13309.5 |
HTH domain |
5.7E-05 |
20-40 / 42-62 |
PF01527.19 |
Transposase |
5.9E-05 |
17-41 / 19-43 |
PF01371.18 |
Trp repressor protein |
6.2E-05 |
16-41 / 45-70 |
PF13518.5 |
Helix-turn-helix domain |
7.5E-05 |
18-40 / 10-32 |
PF13591.5 |
MerR HTH family regulatory protein |
8.1E-05 |
22-40 / 3-21 |
PF00376.22 |
MerR family regulatory protein |
8.8E-05 |
25-39 / 5-19 |
PF05930.11 |
Prophage CP4-57 regulatory protein (AlpA) |
9E-05 |
21-40 / 5-24 |
PF11242.7 |
Protein of unknown function (DUF2774) |
0.0001 |
16-40 / 11-35 |
PF09862.8 |
Protein of unknown function (DUF2089) |
0.00011 |
18-40 / 48-70 |
PF06627.10 |
Protein of unknown function (DUF1153) |
0.00011 |
19-41 / 46-68 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
0.00012 |
19-41 / 17-39 |
PF13413.5 |
Helix-turn-helix domain |
0.00013 |
19-40 / 9-30 |
PF06806.11 |
Putative excisionase (DUF1233) |
0.00015 |
20-40 / 10-30 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
0.00016 |
21-41 / 53-73 |
PF07278.10 |
Protein of unknown function (DUF1441) |
0.00018 |
21-41 / 3-23 |
PF04967.11 |
HTH DNA binding domain |
0.00019 |
20-41 / 24-45 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
0.00018 |
18-41 / 22-45 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.0002 |
19-41 / 17-39 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
0.0002 |
22-40 / 3-21 |
PF13556.5 |
PucR C-terminal helix-turn-helix domain |
0.00021 |
19-41 / 12-34 |
PF09035.9 |
Excisionase from transposon Tn916 |
0.00023 |
20-40 / 16-36 |
PF13551.5 |
Winged helix-turn helix |
0.00027 |
19-40 / 11-32 |
PF10743.8 |
Regulatory phage protein cox |
0.0003 |
20-41 / 12-33 |
PF02042.14 |
RWP-RK domain |
0.00032 |
19-41 / 12-34 |
PF00440.22 |
Bacterial regulatory proteins, tetR family |
0.00033 |
20-41 / 16-37 |
PF00196.18 |
Bacterial regulatory proteins, luxR family |
0.00036 |
16-40 / 14-38 |
PF12116.7 |
Stage III sporulation protein D |
0.00041 |
18-41 / 18-41 |
PF13022.5 |
Helix-turn-helix of insertion element transposase |
0.00051 |
20-41 / 26-47 |
PF06971.12 |
Putative DNA-binding protein N-terminus |
0.00052 |
19-40 / 27-48 |
PF12802.6 |
MarR family |
0.00059 |
20-41 / 22-43 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.00058 |
21-40 / 13-32 |
PF07471.11 |
Phage DNA packaging protein Nu1 |
0.00065 |
21-41 / 4-24 |
PF07506.10 |
RepB plasmid partitioning protein |
0.00065 |
17-41 / 19-43 |
PF12964.6 |
Protein of unknown function (DUF3853) |
0.00073 |
20-41 / 46-67 |
PF05043.12 |
Mga helix-turn-helix domain |
0.00085 |
19-41 / 30-52 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.00092 |
25-36 / 8-19 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.0012 |
19-40 / 34-55 |
PF16221.4 |
winged helix-turn-helix |
0.0012 |
20-41 / 47-68 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
0.0016 |
18-41 / 17-40 |
PF08279.11 |
HTH domain |
0.0019 |
19-40 / 15-36 |
PF04492.12 |
Bacteriophage replication protein O |
0.0019 |
19-41 / 49-71 |
PF12298.7 |
Eukaryotic mitochondrial regulator protein |
0.0018 |
5-40 / 18-54 |
PF09012.9 |
FeoC like transcriptional regulator |
0.0021 |
19-41 / 14-36 |
PF09182.9 |
Bacterial purine repressor, N-terminal |
0.0022 |
19-40 / 20-41 |
PF07381.10 |
Winged helix DNA-binding domain (DUF1495) |
0.0023 |
18-41 / 23-46 |
PF08280.10 |
M protein trans-acting positive regulator (MGA) HTH domain |
0.0026 |
19-40 / 20-41 |
PF13744.5 |
Helix-turn-helix domain |
0.0027 |
18-40 / 30-52 |
PF06576.10 |
Protein of unknown function (DUF1133) |
0.0025 |
10-33 / 122-145 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
0.0031 |
19-40 / 16-37 |
PF05339.10 |
Protein of unknown function (DUF739) |
0.0035 |
19-39 / 16-36 |
PF14549.5 |
DNA-binding transcriptional regulator Cro |
0.0038 |
21-38 / 11-28 |
PF05584.10 |
Sulfolobus plasmid regulatory protein |
0.0039 |
19-40 / 18-39 |
PF12844.6 |
Helix-turn-helix domain |
0.0044 |
20-36 / 13-29 |
PF04814.12 |
Hepatocyte nuclear factor 1 (HNF-1), N terminus |
0.005 |
18-41 / 125-148 |
PF08221.10 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
0.0057 |
19-41 / 27-49 |
PF00392.20 |
Bacterial regulatory proteins, gntR family |
0.0071 |
21-40 / 26-45 |
PF09048.9 |
Cro |
0.0074 |
19-40 / 13-34 |
PF13725.5 |
Possible tRNA binding domain |
0.0074 |
12-37 / 108-133 |
PF05269.10 |
Bacteriophage CII protein |
0.0087 |
19-40 / 23-44 |
PF15977.4 |
Winged helix-turn-helix DNA binding |
0.0089 |
20-40 / 24-44 |
PF09904.8 |
Winged helix-turn helix |
0.0093 |
20-41 / 22-43 |
PF13693.5 |
Winged helix-turn-helix DNA-binding |
0.0098 |
19-38 / 15-34 |