phrog_15534 is made of 6 protein sequences and is annotated as "HTH DNA binding protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
95.67 122 96


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_028930_p36 YP_009210556.1 excisionase-like protein NC_028930 Paenibacillus phage Tripp Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Trippvirus; Paenibacillus virus Tripp.
p37522 no NCBI prot ID no annotation VI_00696 Bacilli_gi_507028124_1766_63644 Viruses.
p336243 no NCBI prot ID no annotation VI_05179 Bacilli_gi_518717293 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p384166 no NCBI prot ID no annotation VI_05178 Bacilli_gi_518697859_0_15863 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p262393 no NCBI prot ID no annotation VI_05170 Bacilli_gi_511699586 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p39200 no NCBI prot ID no annotation VI_01014 Bacteroidia_gi_223954434_0_61099 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_21261 4 no annotation unknown function 3 2.56E-21 11.71

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism 95.4 0.00066 36-85 / 17-68
phrog_11187 transcriptional regulator transcription regulation 90.6 0.05 36-86 / 17-61
phrog_11671 no annotation unknown function 92.6 0.018 36-86 / 4-56
phrog_14131 DNA binding protein DNA, RNA and nucleotide metabolism 91.5 0.034 30-69 / 115-155
phrog_141 terminase small subunit head and packaging 95.0 0.0016 39-84 / 9-55
phrog_151 transposase integration and excision 91.5 0.033 38-62 / 22-46
phrog_1553 excisionase integration and excision 95.3 0.00085 37-85 / 2-61
phrog_16129 excisionase integration and excision 90.5 0.052 35-87 / 9-64
phrog_1840 excisionase integration and excision 95.3 0.00093 39-86 / 6-56
phrog_18541 no annotation unknown function 90.0 0.064 41-88 / 24-75
phrog_1969 no annotation unknown function 90.8 0.047 13-75 / 25-99
phrog_2474 MerR-like transcriptional regulator transcription regulation 93.9 0.0061 36-64 / 12-40
phrog_25262 no annotation unknown function 97.9 1.3E-08 30-88 / 23-85
phrog_2528 no annotation unknown function 97.6 1.4E-07 17-88 / 4-80
phrog_2538 terminase small subunit head and packaging 95.2 0.001 38-70 / 18-48
phrog_2597 DNA primase DNA, RNA and nucleotide metabolism 90.5 0.054 21-74 / 691-745
phrog_2655 excisionase integration and excision 94.4 0.0037 37-62 / 5-30
phrog_268 no annotation unknown function 90.7 0.048 27-73 / 5-52
phrog_2790 excisionase and transcriptional regulator integration and excision 92.7 0.017 33-86 / 31-87
phrog_2907 excisionase integration and excision 96.8 1.2E-05 35-85 / 1-57
phrog_309 terminase small subunit head and packaging 92.3 0.021 40-61 / 25-46
phrog_3218 terminase small subunit head and packaging 91.7 0.031 38-87 / 32-89
phrog_409 transcriptional regulator transcription regulation 90.2 0.059 41-68 / 12-38
phrog_4102 terminase small subunit head and packaging 91.4 0.035 39-64 / 26-51
phrog_4151 DNA binding protein DNA, RNA and nucleotide metabolism 91.0 0.043 40-62 / 21-43
phrog_4494 no annotation unknown function 92.2 0.023 39-88 / 17-72
phrog_4745 DNA binding protein DNA, RNA and nucleotide metabolism 94.1 0.0051 37-88 / 2-62
phrog_4779 transcriptional regulator transcription regulation 91.5 0.034 37-72 / 12-47
phrog_4996 no annotation unknown function 92.8 0.015 11-88 / 9-94
phrog_57 terminase small subunit head and packaging 96.0 0.00018 39-87 / 2-53
phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism 96.1 0.00012 35-87 / 10-62
phrog_6355 no annotation unknown function 92.3 0.021 36-86 / 15-71
phrog_6401 DNA binding protein DNA, RNA and nucleotide metabolism 96.3 6.6E-05 32-87 / 2-59
phrog_6620 transposase integration and excision 92.2 0.023 39-86 / 3-53
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 90.4 0.056 35-73 / 64-103
phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 98.8 3E-12 13-88 / 7-86
phrog_66 excisionase and transcriptional regulator integration and excision 98.7 1.1E-11 34-88 / 4-60
phrog_7338 no annotation unknown function 98.4 3.9E-10 15-88 / 8-80
phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 90.2 0.058 36-75 / 15-55
phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 92.5 0.019 36-66 / 14-45
phrog_9759 DNA binding protein DNA, RNA and nucleotide metabolism 92.8 0.016 40-64 / 19-44

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF12964.6 Protein of unknown function (DUF3853) 1.4E-07 45-93 / 43-93
PF11112.7 Pyocin activator protein PrtN 1.8E-07 46-95 / 12-68
PF10743.8 Regulatory phage protein cox 9.6E-07 45-76 / 9-40
PF13591.5 MerR HTH family regulatory protein 2.2E-06 48-77 / 1-30
PF07618.10 Protein of unknown function (DUF1580) 2.1E-06 51-93 / 6-53
PF09035.9 Excisionase from transposon Tn916 2.2E-06 45-74 / 13-43
PF12728.6 Helix-turn-helix domain 5.5E-06 48-76 / 2-31
PF07825.10 Excisionase-like protein 6.2E-06 48-75 / 3-33
PF13411.5 MerR HTH family regulatory protein 6.5E-06 49-76 / 2-29
PF06806.11 Putative excisionase (DUF1233) 6.5E-06 46-72 / 8-33
PF07278.10 Protein of unknown function (DUF1441) 7E-06 47-72 / 1-26
PF07471.11 Phage DNA packaging protein Nu1 7.8E-06 47-75 / 2-29
PF17443.1 Uncharacterized protein pXO2-72 8E-06 46-72 / 7-33
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 8.3E-06 40-70 / 6-36
PF04936.11 Protein of unknown function (DUF658) 0.00054 46-75 / 87-116
PF07141.10 Putative bacteriophage terminase small subunit 1.4E-05 43-70 / 27-54
PF07750.10 GcrA cell cycle regulator 1.7E-05 42-72 / 13-44
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 2.1E-05 47-74 / 3-31
PF04552.12 Sigma-54, DNA binding domain 2.1E-05 44-71 / 45-72
PF00376.22 MerR family regulatory protein 2.6E-05 49-74 / 1-26
PF10654.8 Protein of unknown function (DUF2481) 3E-05 45-70 / 78-103
PF00292.17 'Paired box' domain 4.4E-05 37-70 / 23-56
PF08822.10 Protein of unknown function (DUF1804) 4.8E-05 40-70 / 11-42
PF01710.15 Transposase 5.4E-05 40-71 / 11-42
PF12759.6 InsA C-terminal domain 6.3E-05 45-69 / 19-43
PF09607.9 Brinker DNA-binding domain 7.4E-05 48-70 / 26-48
PF03333.12 Adhesin biosynthesis transcription regulatory protein 9.7E-05 43-71 / 51-79
PF05344.10 Domain of Unknown Function (DUF746) 0.00011 45-70 / 10-35
PF01381.21 Helix-turn-helix 0.00014 45-70 / 7-32
PF07453.12 NUMOD1 domain 0.00016 46-68 / 18-40
PF08535.9 KorB domain 0.00016 46-70 / 2-26
PF08765.10 Mor transcription activator family 0.00016 46-71 / 71-96
PF14493.5 Helix-turn-helix domain 0.0002 44-70 / 9-35
PF06322.10 Phage NinH protein 0.00022 46-72 / 15-41
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.00023 47-70 / 107-130
PF00356.20 Bacterial regulatory proteins, lacI family 0.00025 49-71 / 1-23
PF01371.18 Trp repressor protein 0.00029 38-71 / 39-72
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.0003 45-70 / 25-49
PF02954.18 Bacterial regulatory protein, Fis family 0.00034 46-69 / 15-38
PF13309.5 HTH domain 0.00034 48-69 / 42-63
PF13011.5 leucine-zipper of insertion element IS481 0.00035 45-70 / 22-47
PF16509.4 TrfB plasmid transcriptional repressor 0.00037 45-70 / 29-54
PF13413.5 Helix-turn-helix domain 0.00038 45-70 / 7-32
PF13518.5 Helix-turn-helix domain 0.0004 46-70 / 10-34
PF10668.8 Phage terminase small subunit 0.00045 47-70 / 22-45
PF13936.5 Helix-turn-helix domain 0.00051 45-69 / 18-42
PF02796.14 Helix-turn-helix domain of resolvase 0.00056 46-69 / 20-43
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.0006 49-69 / 53-73
PF04218.12 CENP-B N-terminal DNA-binding domain 0.00062 47-70 / 23-46
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.00062 46-70 / 18-42
PF10975.7 Protein of unknown function (DUF2802) 0.00073 36-68 / 32-64
PF16677.4 DNA-packaging protein gp3 0.00082 46-71 / 28-53
PF11242.7 Protein of unknown function (DUF2774) 0.00084 44-70 / 11-37
PF07037.10 Putative transcription regulator (DUF1323) 0.00089 48-70 / 1-23
PF08876.10 Domain of unknown function (DUF1836) 0.00096 47-76 / 10-49
PF07638.10 ECF sigma factor 0.0011 44-71 / 146-173
PF12116.7 Stage III sporulation protein D 0.0011 46-71 / 18-43
PF02319.19 E2F/DP family winged-helix DNA-binding domain 0.0011 46-69 / 22-45
PF13551.5 Winged helix-turn helix 0.0011 45-70 / 9-34
PF06627.10 Protein of unknown function (DUF1153) 0.0011 37-70 / 35-69
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 0.0011 45-71 / 21-47
PF05331.10 Protein of unknown function (DUF742) 0.0012 46-70 / 52-76
PF02042.14 RWP-RK domain 0.0013 45-71 / 10-36
PF15978.4 Tn7-like transposition protein D 0.0013 46-70 / 202-226
PF13404.5 AsnC-type helix-turn-helix domain 0.0013 46-69 / 16-39
PF13412.5 Winged helix-turn-helix DNA-binding 0.0014 46-70 / 16-40
PF11427.7 Tc3 transposase 0.0016 45-70 / 18-43
PF06971.12 Putative DNA-binding protein N-terminus 0.0016 47-68 / 27-48
PF13556.5 PucR C-terminal helix-turn-helix domain 0.0021 46-70 / 11-35
PF05225.15 helix-turn-helix, Psq domain 0.0021 45-70 / 14-40
PF01527.19 Transposase 0.0021 45-71 / 19-45
PF00126.26 Bacterial regulatory helix-turn-helix protein, lysR family 0.0022 47-70 / 11-34
PF07506.10 RepB plasmid partitioning protein 0.0022 45-70 / 19-44
PF13384.5 Homeodomain-like domain 0.0023 46-71 / 16-41
PF08281.11 Sigma-70, region 4 0.0027 45-70 / 24-49
PF13443.5 Cro/C1-type HTH DNA-binding domain 0.0027 46-70 / 9-34
PF08222.10 CodY helix-turn-helix domain 0.0028 46-69 / 3-26
PF13022.5 Helix-turn-helix of insertion element transposase 0.0029 47-71 / 25-49
PF00440.22 Bacterial regulatory proteins, tetR family 0.0036 48-70 / 16-38
PF00325.19 Bacterial regulatory proteins, crp family 0.0038 48-69 / 3-24
PF05339.10 Protein of unknown function (DUF739) 0.0041 46-70 / 15-39
PF14549.5 DNA-binding transcriptional regulator Cro 0.0043 46-67 / 9-29
PF04545.15 Sigma-70, region 4 0.0044 46-70 / 23-47
PF06413.10 Neugrin 0.0043 47-70 / 29-52
PF08279.11 HTH domain 0.0045 46-69 / 14-37
PF04967.11 HTH DNA binding domain 0.0047 47-70 / 23-46
PF12793.6 Sugar transport-related sRNA regulator N-term 0.0049 45-69 / 16-40
PF07022.12 Bacteriophage CI repressor helix-turn-helix domain 0.0057 47-71 / 11-36
PF13744.5 Helix-turn-helix domain 0.0058 45-70 / 29-54
PF09012.9 FeoC like transcriptional regulator 0.0061 46-69 / 13-36
PF13171.5 Protein of unknown function (DUF4004) 0.0059 48-74 / 3-29
PF00196.18 Bacterial regulatory proteins, luxR family 0.0064 45-70 / 15-40
PF12844.6 Helix-turn-helix domain 0.0064 46-70 / 11-35
PF16221.4 winged helix-turn-helix 0.0067 46-69 / 45-68
PF09182.9 Bacterial purine repressor, N-terminal 0.0069 45-70 / 18-43
PF16701.4 Adenylate cyclase regulatory domain 0.0076 47-74 / 58-86
PF05043.12 Mga helix-turn-helix domain 0.0081 45-70 / 28-53
PF01022.19 Bacterial regulatory protein, arsR family 0.0088 46-69 / 15-38
PF04645.11 Protein of unknown function, DUF603 0.0092 46-71 / 18-47

Annotations of the NCBI proteins of this PHROG


1:excisionase-like protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0005524 ATP binding
GO:0004803 transposase activity
GO:0043565 sequence-specific DNA binding
GO:0051775 response to redox state
GO:0006352 DNA-templated transcription, initiation
GO:0005737 cytoplasm
GO:0006355 regulation of transcription, DNA-templated
GO:0019069 viral capsid assembly
GO:0003700 DNA binding transcription factor activity
GO:0000150 recombinase activity
GO:0006313 transposition, DNA-mediated
GO:0003677 DNA binding
GO:0006310 DNA recombination
GO:0005622 intracellular
GO:0016987 sigma factor activity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0005667 transcription factor complex

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