phrog_1740 is made of 86 protein sequences and is annotated as "RNA polymerase sigma factor"
Functional category: transcription regulation


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
197.84 688 180


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p64786 no NCBI prot ID no annotation VI_04289 Alphaproteobacteria_gi_584596366_8919_59450 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
KX522565_p55 AOA49547.1 RNA polymerase sigma factor KX522565 Wolbachia phage WO Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
p406435 no NCBI prot ID no annotation VI_04351 Alphaproteobacteria_gi_373449894 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p15415 no NCBI prot ID no annotation VI_00094 Alphaproteobacteria_gi_558562543_24663_106868 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p7117 no NCBI prot ID no annotation VI_06240 Deltaproteobacteria_gi_544815434 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
NC_020478_p44 YP_007517509.1 RNA polymerase sigma-70 factor NC_020478 Bacillus virus Andromeda Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
NC_020479_p45 YP_007517589.1 RNA polymerase sigma-70 factor NC_020479 Bacillus virus Curly Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
NC_020477_p43 YP_007517433.1 RNA polymerase sigma-70 factor NC_020477 Bacillus virus Eoghan Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
NC_022773_p47 YP_008771870.1 RNA polymerase sigma-70 factor NC_022773 Bacillus virus Blastoid Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
KC330682_p43 AGE60961.1 RNA polymerase sigma-70 factor KC330682 Bacillus virus Taylor Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
NC_022766_p44 YP_008770680.1 RNA polymerase sigma factor NC_022766 Bacillus virus Glittering Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
NC_022765_p45 YP_008770602.1 RNA polymerase sigma-70 factor NC_022765 Bacillus virus Riggi Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
KU836751_p44 AMR60083.1 RNA polymerase KU836751 Bacillus phage Leo2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus; unclassified Andromedavirus.
MG983742_p42 AVO23054.1 hypothetical protein MG983742 Bacillus phage Anath Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
NC_020480_p42 YP_007517663.1 RNA polymerase sigma-70 factor NC_020480 Bacillus virus Finn Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andromedavirus.
p69039 no NCBI prot ID no annotation VI_00707 Bacilli_gi_507053172 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p58698 no NCBI prot ID no annotation VI_00423 Bacilli_gi_423490981 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p25713 no NCBI prot ID no annotation VI_08154 Gammaproteobacteria_gi_419324015_0_71426 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p396883 no NCBI prot ID no annotation VI_11998 Gammaproteobacteria_gi_566137562 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p77027 no NCBI prot ID no annotation VI_00469 Bacilli_gi_403048122 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p23140 no NCBI prot ID no annotation VI_12446 Spirochaetia_gi_480994565 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_011103_p86 YP_002117644.1 p086 NC_011103 Rhizobium phage 16-3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_011103_p87 YP_002117645.1 p087 NC_011103 Rhizobium phage 16-3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p30014 no NCBI prot ID no annotation VI_00108 Alphaproteobacteria_gi_485071565 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae; Rhizobium phage 16-3.
p437914 no NCBI prot ID no annotation VI_04292 Alphaproteobacteria_gi_486400801_1185_10398 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
NC_025429_p93 YP_009099832.1 RNA polymerase sigma-70 factor NC_025429 Rhizobium phage vB_RleM_P10VF Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; unclassified Ackermannviridae.
NC_028676_p85 YP_009189470.1 DNA-directed RNA polymerase specialized sigma subunit NC_028676 Sinorhizobium phage phiM9 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; unclassified Ackermannviridae.
p175250 no NCBI prot ID no annotation VI_12329 Sphingobacteriia_gi_408542838 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
MF403007_p28 AUZ94808.1 RNA polymerase ECF-type sigma factor MF403007 Agrobacterium phage Atu_ph04 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; unclassified Ackermannviridae.
NC_004735_p144 NP_835731.1 similar to RNA polymerase ECF-type sigma factor NC_004735 Rhodothermus phage RM378 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p49247 no NCBI prot ID no annotation VI_05491 Bacteroidia_gi_293372908_329_57889 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p26178 no NCBI prot ID no annotation VI_01015 Bacteroidia_gi_423298834_868952_940205 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p25768 no NCBI prot ID no annotation VI_05494 Bacteroidia_gi_482849993_161755_233136 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_027395_p32 YP_009152883.1 RNA polymerase ECF sigma factor NC_027395 Escherichia phage vB_EcoP_SU10 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus.
NC_023593_p32 YP_009008726.1 hypothetical protein NC_023593 Escherichia phage KBNP1711 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus.
NC_018859_p31 YP_006908882.1 hypothetical protein NC_018859 Escherichia phage ECBP2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus.
MG983840_p23 AVQ10028.1 RNA polymerase ECF sigma factor MG983840 Escherichia phage myPSH1131 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus; unclassified Kuravirus.
NC_018835_p37 YP_006906108.1 RNA polymerase ECF sigma factor NC_018835 Escherichia phage NJ01 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus.
MG673519_p31 AUM57614.1 putative RNA polymerase ECF sigma factor MG673519 Escherichia phage LAMP Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus; unclassified Kuravirus.
NC_010324_p36 YP_001671781.1 RNA polymerase ECF sigma factor NC_010324 Escherichia virus phiEco32 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus.
MG976803_p26 AVP40123.1 RNA polymerase ECF sigma factor MG976803 Escherichia phage myPSH2311 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus; unclassified Kuravirus.
NC_028903_p51 YP_009208199.1 hypothetical protein NC_028903 Escherichia phage 172-1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kuravirus.
NC_007808_p12 YP_001294605.1 hypothetical protein ORF012 NC_007808 Pseudomonas phage PA11 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
NC_019540_p21 YP_007010532.1 RNA polymerase sigma factor NC_019540 Salinivibrio phage CW02 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
MG676466_p41 AUG88552.1 RNA polymerase sigma factor MG676466 Pseudomonas phage TC6 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
NC_027988_p45 YP_009168428.1 putative sigma factor NC_027988 Citrobacter phage CVT22 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
NC_031274_p45 YP_009304524.1 RNA polymerase sigma factor NC_031274 Pseudomonas phage O4 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
MF788075_p43 ATG86280.1 hypothetical protein MF788075 Pseudomonas phage IME180 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
NC_019402_p44 YP_006987691.1 RNA polymerase ECF sigma factor NC_019402 Cronobacter phage vB_CsaP_GAP52 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
MG873442_p106 AVJ48237.1 RNA polymerase ECF-type sigma factor MG873442 Salmonella phage SE131 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
NC_015938_p47 YP_004782422.1 RNA polymerase ECF sigma factor NC_015938 Salmonella phage 7-11 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
MG603697_p139 AUG88503.1 hypothetical protein MG603697 Vibrio phage Vp_R1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
p436338 no NCBI prot ID no annotation VI_06056 Clostridia_gi_545025134 Viruses.
p395730 no NCBI prot ID no annotation VI_06127 Clostridia_gi_545044593 Viruses.
p393032 no NCBI prot ID no annotation VI_06156 Clostridia_gi_545052176 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p392896 no NCBI prot ID no annotation VI_05990 Clostridia_gi_545004420 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p399311 no NCBI prot ID no annotation VI_05758 Clostridia_gi_219723305 Viruses.
p376338 no NCBI prot ID no annotation VI_06135 Clostridia_gi_545048494 Viruses.
KX905163_p39 ARB07082.1 RNA polymerase sigma factor KX905163 Clostridioides phage phiSemix9P1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
p388194 no NCBI prot ID no annotation VI_06141 Clostridia_gi_545050016 Viruses.
p378095 no NCBI prot ID no annotation VI_09900 Gammaproteobacteria_gi_498485000_0_16480 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p257083 no NCBI prot ID no annotation VI_10204 Gammaproteobacteria_gi_544682955 Viruses.
p406673 no NCBI prot ID no annotation VI_10198 Gammaproteobacteria_gi_544677275_2739_16098 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Baylorvirus; Mannheimia virus PHL101; Mannheimia phage vB_MhM_1152AP.
p406698 no NCBI prot ID no annotation VI_06565 Gammaproteobacteria_gi_538038770 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Baylorvirus; Mannheimia virus PHL101; Mannheimia phage vB_MhM_1152AP.
p108934 no NCBI prot ID no annotation VI_01216 Clostridia_gi_546486246 Viruses.
p17383 no NCBI prot ID no annotation VI_05476 Bacilli_gi_470957326_10686_89923 Viruses.
p120142 no NCBI prot ID no annotation VI_00035 Actinobacteria_gi_515222949 Viruses.
p77623 no NCBI prot ID no annotation VI_00064 Actinobacteria_gi_523594143 Viruses.
p109535 no NCBI prot ID no annotation VI_04081 Actinobacteria_gi_298253790 Viruses.
p47637 no NCBI prot ID no annotation VI_00065 Actinobacteria_gi_523607311 Viruses.
NC_022774_p25 YP_008771927.1 ECF subfamily RNA polymerase sigma-24 factor NC_022774 Bacillus phage Slash Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Slashvirus.
NC_028856_p25 YP_009203629.1 RNA polymerase sigma factor NC_028856 Bacillus phage Stahl Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Slashvirus.
NC_028777_p24 YP_009196909.1 RNA polymerase sigma factor NC_028777 Bacillus phage Stills Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Slashvirus.
KC595511_p20 AGR46683.1 hypothetical protein KC595511 Bacillus phage Basilisk Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
KT070866_p118 AKQ08310.1 hypothetical protein KT070866 Bacillus phage PBC4 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
NC_022767_p25 YP_008770739.1 RNA polymerase sigma factor NC_022767 Bacillus phage Staley Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Slashvirus.
NC_028805_p140 YP_009199201.1 putative DNA-directed RNA polymerase subunit sigma-24 NC_028805 Brevibacillus phage Jenst Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Jenstvirus.
KT151957_p145 ALA07470.1 putative DNA-directed RNA polymerase subunit sigma-24 KT151957 Brevibacillus phage SecTim467 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Jenstvirus; Brevibacillus virus Jenst.
KF114878_p5 AGS80671.1 sigma-70, region 4 KF114878 Leptospira phage vb_LkmZ_Bejolso9-LE1 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA phages.
p426759 no NCBI prot ID no annotation VI_12327 Planctomycetia_gi_163804441 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
p73943 no NCBI prot ID no annotation VI_01292 Clostridia_gi_512436369 Viruses.
p241814 no NCBI prot ID no annotation VI_04140 Actinobacteria_gi_441157011 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p14124 no NCBI prot ID no annotation VI_01294 Clostridia_gi_512436394 Viruses.
p343107 no NCBI prot ID no annotation VI_00099 Alphaproteobacteria_gi_482992239 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_024217_p1 YP_009037191.1 putative RNA polymerase sigma 70 factor protein NC_024217 Nitrincola phage 1M3-16 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p54082 no NCBI prot ID no annotation VI_01167 Clostridia_gi_313116237 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_190 562 Holliday junction resolvase DNA, RNA and nucleotide metabolism 11 4.59E-22 12.46
phrog_6833 17 no annotation unknown function 9 2.21E-34 24.78
phrog_12603 8 no annotation unknown function 8 0 1000
phrog_13425 7 no annotation unknown function 7 0 1000
phrog_7234 16 no annotation unknown function 6 3.38E-23 13.59
phrog_173 593 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 6 1.35E-11 1.99
phrog_19228 4 no annotation unknown function 4 0 1000
phrog_21477 4 no annotation unknown function 4 0 1000
phrog_26830 3 no annotation unknown function 3 0 1000
phrog_6599 18 no annotation unknown function 3 2.20E-12 2.78
phrog_26233 3 no annotation unknown function 3 0 1000
phrog_36263 2 no annotation unknown function 2 0 1000
phrog_30479 2 no annotation unknown function 2 0 1000
phrog_28938 2 no annotation unknown function 2 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_10157 no annotation unknown function 93.8 0.0066 119-170 / 86-137
phrog_1025 RNA polymerase sigma factor transcription regulation 94.5 0.0029 8-176 / 25-208
phrog_10300 transcriptional regulator transcription regulation 94.3 0.004 124-170 / 118-163
phrog_1058 no annotation unknown function 91.9 0.028 116-171 / 73-130
phrog_11138 no annotation unknown function 98.4 1.7E-10 108-175 / 73-140
phrog_1123 no annotation unknown function 90.8 0.046 123-168 / 14-60
phrog_11306 no annotation unknown function 93.5 0.0088 143-173 / 1-31
phrog_11376 no annotation unknown function 95.1 0.0012 141-170 / 57-86
phrog_11420 DNA binding protein DNA, RNA and nucleotide metabolism 90.3 0.058 126-166 / 9-49
phrog_11457 no annotation unknown function 91.6 0.031 139-165 / 20-46
phrog_1190 RNA polymerase sigma factor transcription regulation 98.1 3.3E-09 113-176 / 124-187
phrog_12061 no annotation unknown function 93.9 0.0062 109-176 / 28-95
phrog_12540 no annotation unknown function 93.0 0.014 128-167 / 15-54
phrog_12823 no annotation unknown function 94.1 0.0048 126-169 / 12-55
phrog_12839 no annotation unknown function 91.8 0.028 33-173 / 48-210
phrog_1373 transcriptional regulator transcription regulation 91.7 0.03 135-165 / 37-67
phrog_13787 no annotation unknown function 97.9 1.6E-08 103-176 / 98-170
phrog_14025 no annotation unknown function 95.1 0.0012 137-165 / 25-53
phrog_14385 no annotation unknown function 94.1 0.0052 108-172 / 141-208
phrog_1558 no annotation unknown function 93.9 0.0061 130-174 / 105-149
phrog_16553 transcriptional repressor transcription regulation 93.5 0.0093 126-161 / 6-41
phrog_16568 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover 92.1 0.025 134-167 / 66-99
phrog_20467 HNH endonuclease DNA, RNA and nucleotide metabolism 95.8 0.00028 125-165 / 53-93
phrog_22553 no annotation unknown function 91.6 0.032 125-168 / 43-88
phrog_2308 no annotation unknown function 95.7 0.00038 127-166 / 1-40
phrog_248 transcriptional activator transcription regulation 95.5 0.00062 113-177 / 68-135
phrog_2538 terminase small subunit head and packaging 92.2 0.022 126-165 / 3-42
phrog_26230 no annotation unknown function 90.4 0.056 125-174 / 63-112
phrog_26445 no annotation unknown function 95.2 0.0011 129-171 / 4-46
phrog_27454 RNA polymerase sigma factor transcription regulation 94.5 0.0031 38-173 / 37-172
phrog_27555 transcriptional regulator transcription regulation 94.7 0.0024 138-172 / 142-176
phrog_31712 no annotation unknown function 95.0 0.0014 24-173 / 13-144
phrog_32138 DNA binding protein DNA, RNA and nucleotide metabolism 92.0 0.026 131-166 / 9-42
phrog_323 transcriptional regulator, D5-like transcription regulation 90.6 0.051 125-173 / 48-95
phrog_3282 sigma factor transcription regulation 96.8 1.2E-05 127-173 / 18-63
phrog_3512 sigma factor transcription regulation 97.7 7.9E-08 113-176 / 48-116
phrog_351 RNA polymerase sigma factor transcription regulation 99.3 8.1E-16 11-178 / 14-230
phrog_354 sigma-K factor transcription regulation 93.0 0.013 24-175 / 8-156
phrog_36 transcriptional regulator transcription regulation 97.2 1.3E-06 110-175 / 73-138
phrog_37242 no annotation unknown function 92.4 0.021 114-172 / 153-211
phrog_3855 HTH DNA binding protein DNA, RNA and nucleotide metabolism 95.3 0.00079 138-168 / 75-105
phrog_3910 transcriptional regulator transcription regulation 93.2 0.012 137-164 / 74-101
phrog_4151 DNA binding protein DNA, RNA and nucleotide metabolism 94.1 0.0047 130-164 / 8-42
phrog_4646 transposase integration and excision 92.5 0.019 124-169 / 4-49
phrog_4779 transcriptional regulator transcription regulation 92.9 0.014 139-166 / 11-38
phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism 94.5 0.0031 126-166 / 63-103
phrog_5751 terminase large subunit head and packaging 94.8 0.002 139-162 / 15-38
phrog_5767 sigma factor transcription regulation 91.1 0.04 117-176 / 280-340
phrog_6081 no annotation unknown function 94.7 0.0023 124-166 / 57-99
phrog_6223 transcriptional repressor transcription regulation 94.5 0.0032 127-165 / 3-40
phrog_6362 no annotation unknown function 95.7 0.00038 120-172 / 10-62
phrog_645 Rnase E DNA, RNA and nucleotide metabolism 91.4 0.036 132-169 / 26-62
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 95.0 0.0015 124-166 / 50-92
phrog_66 excisionase and transcriptional regulator integration and excision 90.2 0.059 142-167 / 9-34
phrog_6831 transcriptional regulator transcription regulation 90.4 0.056 132-164 / 5-37
phrog_6836 no annotation unknown function 90.4 0.056 113-178 / 62-129
phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism 93.3 0.01 124-167 / 18-62
phrog_7061 HTH DNA binding protein DNA, RNA and nucleotide metabolism 90.2 0.06 137-167 / 39-69
phrog_7067 terminase small subunit head and packaging 92.9 0.014 139-163 / 28-52
phrog_7344 terminase small subunit head and packaging 94.9 0.0017 122-161 / 6-45
phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 90.6 0.051 137-165 / 13-41
phrog_79 anti-termination protein Q-like transcription regulation 95.6 0.00048 118-176 / 51-112
phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 91.0 0.042 140-169 / 16-45
phrog_9759 DNA binding protein DNA, RNA and nucleotide metabolism 94.7 0.0023 130-166 / 7-42

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF07638.10 ECF sigma factor 7.5E-13 44-211 / 5-179
PF04542.13 Sigma-70 region 2 4.3E-06 62-127 / 2-66
PF12645.6 Helix-turn-helix domain 0.00011 46-100 / 3-63

Annotations of the NCBI proteins of this PHROG


10:hypothetical protein 9:RNA polymerase sigma factor 8:RNA polymerase ECF sigma factor 8:RNA polymerase sigma-70 factor 2:DNA-directed RNA polymerase subunit sigma-24 2:RNA polymerase ECF-type sigma factor 1:sigma-70, region 4 1:ECF subfamily RNA polymerase sigma-24 factor 1:RNA polymerase 1:similar to RNA polymerase ECF-type sigma factor 1:sigma subunit of RNA polymerase 1:RNA polymerase sigma 70 factor protein 1:sigma factor 1:DNA-directed RNA polymerase specialized sigma subunit

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
K03088 SIG3.2, rpoE : RNA polymerase sigma-70 factor, ECF subfamily no pathways 386 42

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006355 regulation of transcription, DNA-templated
GO:0003700 DNA binding transcription factor activity
GO:0006352 DNA-templated transcription, initiation

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