ID |
Definition |
Evalue |
posQ/posS |
PF05158.11 |
RNA polymerase Rpc34 subunit |
1.1E-09 |
15-155 / 11-143 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
1.4E-09 |
1-63 / 5-75 |
PF04079.15 |
Segregation and condensation complex subunit ScpB |
0.0013 |
15-85 / 81-144 |
PF10007.8 |
Uncharacterized protein conserved in archaea (DUF2250) |
0.0038 |
40-73 / 23-56 |
PF04492.12 |
Bacteriophage replication protein O |
1.7E-05 |
15-80 / 25-90 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
0.00011 |
40-73 / 24-57 |
PF16221.4 |
winged helix-turn-helix |
0.00093 |
40-71 / 47-78 |
PF05584.10 |
Sulfolobus plasmid regulatory protein |
0.0016 |
40-73 / 19-52 |
PF01090.18 |
Ribosomal protein S19e |
6.2E-06 |
106-156 / 53-116 |
PF07381.10 |
Winged helix DNA-binding domain (DUF1495) |
0.0031 |
40-73 / 25-68 |
PF03965.15 |
Penicillinase repressor |
0.0039 |
40-82 / 19-66 |
PF09012.9 |
FeoC like transcriptional regulator |
0.0005 |
40-75 / 15-50 |
PF08221.10 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
0.003 |
15-72 / 11-60 |
PF04358.12 |
DsrC like protein |
0.00013 |
14-72 / 36-94 |
PF09114.9 |
Transcription factor MotA, activation domain |
0.0076 |
15-73 / 14-65 |
PF08784.10 |
Replication protein A C terminal |
0.0021 |
15-73 / 38-95 |
PF14557.5 |
Putative AphA-like transcriptional regulator |
1.2E-05 |
101-155 / 5-68 |
PF14277.5 |
Domain of unknown function (DUF4364) |
0.0022 |
40-83 / 16-63 |
PF13463.5 |
Winged helix DNA-binding domain |
0.0049 |
40-72 / 18-50 |
PF02295.16 |
Adenosine deaminase z-alpha domain |
0.0012 |
40-73 / 19-53 |
PF02334.15 |
Replication terminator protein |
2.3E-05 |
107-156 / 21-76 |
PF01475.18 |
Ferric uptake regulator family |
0.0047 |
15-75 / 5-63 |
PF07106.12 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
0.0026 |
40-82 / 17-61 |
PF13601.5 |
Winged helix DNA-binding domain |
0.0058 |
40-74 / 15-49 |
PF01047.21 |
MarR family |
0.0072 |
40-74 / 18-52 |
PF14394.5 |
Domain of unknown function (DUF4423) |
0.0077 |
40-73 / 37-72 |
PF01726.15 |
LexA DNA binding domain |
0.00014 |
16-73 / 5-60 |
PF01978.18 |
Sugar-specific transcriptional regulator TrmB |
0.0015 |
40-75 / 23-58 |
PF04182.11 |
B-block binding subunit of TFIIIC |
0.0066 |
40-74 / 19-53 |
PF09824.8 |
ArsR transcriptional regulator |
0.0002 |
103-154 / 16-62 |
PF03551.13 |
Transcriptional regulator PadR-like family |
0.0035 |
40-74 / 15-51 |
PF12840.6 |
Helix-turn-helix domain |
5E-05 |
104-154 / 8-54 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
0.0045 |
40-72 / 19-51 |
PF02002.16 |
TFIIE alpha subunit |
0.0078 |
40-74 / 27-61 |
PF06163.10 |
Bacterial protein of unknown function (DUF977) |
0.0037 |
40-75 / 27-62 |
PF05732.10 |
Firmicute plasmid replication protein (RepL) |
0.0005 |
17-74 / 55-110 |
PF03428.12 |
Replication protein C N-terminal domain |
0.002 |
15-75 / 41-107 |
PF08222.10 |
CodY helix-turn-helix domain |
0.00037 |
40-74 / 5-39 |
PF11313.7 |
Protein of unknown function (DUF3116) |
0.0048 |
48-75 / 36-63 |
PF01638.16 |
HxlR-like helix-turn-helix |
9.3E-05 |
107-155 / 8-55 |
PF07848.11 |
PaaX-like protein |
0.00026 |
40-80 / 21-64 |
PF09202.10 |
Rio2, N-terminal |
0.0038 |
40-74 / 25-59 |
PF13034.5 |
Protein of unknown function (DUF3895) |
0.0001 |
104-155 / 3-68 |
PF09339.9 |
IclR helix-turn-helix domain |
0.0048 |
40-71 / 19-50 |
PF09639.9 |
YjcQ protein |
0.00011 |
120-157 / 17-55 |
PF09904.8 |
Winged helix-turn helix |
0.0046 |
40-71 / 22-53 |
PF10711.8 |
Hypothetical protein (DUF2513) |
0.00013 |
108-157 / 9-59 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
0.00015 |
108-150 / 6-46 |
PF14947.5 |
Winged helix-turn-helix |
0.00016 |
108-154 / 6-50 |
PF04703.11 |
FaeA-like protein |
0.00019 |
109-154 / 5-48 |
PF16365.4 |
Ethanolamine utilization protein EutK C-terminus |
0.0074 |
40-72 / 18-50 |
PF12802.6 |
MarR family |
0.0024 |
40-73 / 22-55 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
0.00021 |
109-150 / 8-47 |
PF03444.14 |
Winged helix-turn-helix transcription repressor, HrcA DNA-binding |
0.00095 |
17-73 / 4-58 |
PF05491.12 |
Holliday junction DNA helicase ruvB C-terminus |
0.00032 |
103-154 / 7-60 |
PF10771.8 |
Winged helix-turn-helix domain (DUF2582) |
0.0011 |
14-76 / 5-59 |
PF08220.11 |
DeoR-like helix-turn-helix domain |
0.00035 |
109-153 / 5-47 |
PF01316.20 |
Arginine repressor, DNA binding domain |
0.00035 |
105-154 / 6-55 |
PF16864.4 |
Dimerisation domain |
0.00036 |
106-153 / 20-65 |
PF03297.14 |
S25 ribosomal protein |
0.00037 |
108-154 / 46-90 |
PF06969.15 |
HemN C-terminal domain |
0.00039 |
108-153 / 10-54 |
PF13730.5 |
Helix-turn-helix domain |
0.00096 |
121-150 / 28-52 |
PF08461.9 |
Ribonuclease R winged-helix domain |
0.00052 |
110-154 / 4-51 |
PF09182.9 |
Bacterial purine repressor, N-terminal |
0.0075 |
40-75 / 21-61 |
PF01325.18 |
Iron dependent repressor, N-terminal DNA binding domain |
0.0058 |
40-73 / 22-55 |
PF00392.20 |
Bacterial regulatory proteins, gntR family |
0.0051 |
41-73 / 26-58 |
PF15977.4 |
Winged helix-turn-helix DNA binding |
0.0025 |
38-72 / 22-56 |
PF09681.9 |
N-terminal phage replisome organiser (Phage_rep_org_N) |
0.0084 |
120-153 / 54-86 |
PF02082.19 |
Transcriptional regulator |
0.0034 |
40-72 / 25-57 |
PF05331.10 |
Protein of unknown function (DUF742) |
0.0011 |
102-155 / 39-88 |
PF14502.5 |
Helix-turn-helix domain |
0.003 |
40-73 / 7-40 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.0012 |
103-154 / 15-68 |
PF08279.11 |
HTH domain |
0.0014 |
109-148 / 5-43 |
PF11972.7 |
HTH DNA binding domain |
0.0015 |
109-150 / 4-40 |
PF08679.10 |
Dissimilatory sulfite reductase D (DsrD) |
0.0082 |
41-81 / 18-59 |
PF09397.9 |
Ftsk gamma domain |
0.0017 |
109-154 / 10-53 |
PF13545.5 |
Crp-like helix-turn-helix domain |
0.0026 |
38-72 / 26-60 |
PF07900.10 |
Protein of unknown function (DUF1670) |
0.0022 |
120-155 / 96-130 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.0046 |
109-144 / 8-41 |
PF08820.9 |
Domain of unknown function (DUF1803) |
0.0048 |
106-154 / 14-59 |
PF08535.9 |
KorB domain |
0.005 |
120-155 / 4-38 |
PF05043.12 |
Mga helix-turn-helix domain |
0.0052 |
106-147 / 18-57 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.0064 |
120-150 / 3-32 |
PF13749.5 |
Putative ATP-dependent DNA helicase recG C-terminal |
0.0064 |
34-85 / 19-70 |
PF07183.10 |
Protein of unknown function (DUF1403) |
0.0075 |
105-154 / 275-320 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.0078 |
120-153 / 12-47 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.0086 |
120-154 / 9-51 |