ID |
Definition |
Evalue |
posQ/posS |
PF04079.15 |
Segregation and condensation complex subunit ScpB |
3.7E-10 |
23-103 / 78-150 |
PF14557.5 |
Putative AphA-like transcriptional regulator |
5.8E-10 |
23-108 / 3-93 |
PF10007.8 |
Uncharacterized protein conserved in archaea (DUF2250) |
6.1E-10 |
24-103 / 4-91 |
PF02334.15 |
Replication terminator protein |
1.9E-09 |
49-115 / 31-113 |
PF09114.9 |
Transcription factor MotA, activation domain |
3.8E-09 |
23-109 / 11-85 |
PF07381.10 |
Winged helix DNA-binding domain (DUF1495) |
4.7E-09 |
24-101 / 5-87 |
PF11313.7 |
Protein of unknown function (DUF3116) |
5.1E-09 |
49-105 / 20-82 |
PF03965.15 |
Penicillinase repressor |
5.2E-09 |
27-98 / 2-70 |
PF04492.12 |
Bacteriophage replication protein O |
8.2E-09 |
13-83 / 12-83 |
PF16221.4 |
winged helix-turn-helix |
9.5E-09 |
13-81 / 6-78 |
PF01090.18 |
Ribosomal protein S19e |
9.7E-09 |
31-107 / 54-137 |
PF05584.10 |
Sulfolobus plasmid regulatory protein |
1E-08 |
25-99 / 3-69 |
PF14394.5 |
Domain of unknown function (DUF4423) |
1.2E-08 |
27-103 / 20-90 |
PF14277.5 |
Domain of unknown function (DUF4364) |
1.3E-08 |
31-105 / 3-73 |
PF03428.12 |
Replication protein C N-terminal domain |
1.6E-08 |
12-83 / 27-105 |
PF05732.10 |
Firmicute plasmid replication protein (RepL) |
1.8E-08 |
19-83 / 45-109 |
PF13601.5 |
Winged helix DNA-binding domain |
2.4E-08 |
48-107 / 13-74 |
PF02002.16 |
TFIIE alpha subunit |
4.2E-08 |
29-118 / 13-97 |
PF09857.8 |
Putative toxin of bacterial toxin-antitoxin pair |
4.6E-08 |
25-105 / 2-80 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
8E-08 |
29-83 / 8-57 |
PF04358.12 |
DsrC like protein |
8.4E-08 |
16-83 / 24-95 |
PF03551.13 |
Transcriptional regulator PadR-like family |
8.7E-08 |
48-102 / 13-72 |
PF13463.5 |
Winged helix DNA-binding domain |
9.1E-08 |
28-97 / 3-66 |
PF14947.5 |
Winged helix-turn-helix |
1.4E-07 |
30-105 / 4-71 |
PF09639.9 |
YjcQ protein |
1.7E-07 |
48-105 / 15-83 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
1.8E-07 |
48-104 / 17-74 |
PF10711.8 |
Hypothetical protein (DUF2513) |
1.9E-07 |
49-106 / 18-86 |
PF01638.16 |
HxlR-like helix-turn-helix |
2.1E-07 |
30-105 / 7-77 |
PF09202.10 |
Rio2, N-terminal |
3.3E-07 |
26-102 / 4-74 |
PF08221.10 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
3.4E-07 |
26-83 / 11-61 |
PF05158.11 |
RNA polymerase Rpc34 subunit |
3.4E-07 |
23-84 / 87-143 |
PF06163.10 |
Bacterial protein of unknown function (DUF977) |
4.1E-07 |
25-83 / 9-60 |
PF01978.18 |
Sugar-specific transcriptional regulator TrmB |
4.4E-07 |
23-83 / 3-56 |
PF05491.12 |
Holliday junction DNA helicase ruvB C-terminus |
5.5E-07 |
23-102 / 3-73 |
PF01475.18 |
Ferric uptake regulator family |
6.5E-07 |
24-83 / 3-61 |
PF08222.10 |
CodY helix-turn-helix domain |
7.2E-07 |
48-83 / 3-38 |
PF08784.10 |
Replication protein A C terminal |
7.2E-07 |
24-83 / 36-95 |
PF03444.14 |
Winged helix-turn-helix transcription repressor, HrcA DNA-binding |
2.1E-06 |
48-102 / 23-74 |
PF02295.16 |
Adenosine deaminase z-alpha domain |
2.3E-06 |
29-83 / 5-53 |
PF09012.9 |
FeoC like transcriptional regulator |
2.5E-06 |
48-83 / 13-48 |
PF09904.8 |
Winged helix-turn helix |
2.7E-06 |
48-99 / 20-74 |
PF08461.9 |
Ribonuclease R winged-helix domain |
3.5E-06 |
49-100 / 12-63 |
PF07106.12 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
3.9E-06 |
31-83 / 4-52 |
PF12802.6 |
MarR family |
4.4E-06 |
26-83 / 3-55 |
PF07848.11 |
PaaX-like protein |
4.4E-06 |
48-96 / 19-68 |
PF01726.15 |
LexA DNA binding domain |
5.1E-06 |
49-83 / 25-60 |
PF01047.21 |
MarR family |
6E-06 |
29-83 / 4-51 |
PF13034.5 |
Protein of unknown function (DUF3895) |
6.3E-06 |
27-83 / 2-67 |
PF09824.8 |
ArsR transcriptional regulator |
6.4E-06 |
27-82 / 16-61 |
PF10771.8 |
Winged helix-turn-helix domain (DUF2582) |
9.6E-06 |
25-83 / 5-56 |
PF04182.11 |
B-block binding subunit of TFIIIC |
1.1E-05 |
30-83 / 4-52 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
1.2E-05 |
49-79 / 17-47 |
PF12840.6 |
Helix-turn-helix domain |
1.2E-05 |
27-83 / 7-54 |
PF04703.11 |
FaeA-like protein |
1.3E-05 |
48-83 / 13-48 |
PF06969.15 |
HemN C-terminal domain |
1.4E-05 |
48-82 / 19-54 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
1.5E-05 |
48-79 / 15-46 |
PF08535.9 |
KorB domain |
1.8E-05 |
49-100 / 3-57 |
PF09339.9 |
IclR helix-turn-helix domain |
2E-05 |
49-82 / 18-51 |
PF13730.5 |
Helix-turn-helix domain |
2.2E-05 |
25-79 / 2-52 |
PF02082.19 |
Transcriptional regulator |
2.8E-05 |
50-82 / 25-57 |
PF16365.4 |
Ethanolamine utilization protein EutK C-terminus |
2.8E-05 |
48-82 / 16-50 |
PF16864.4 |
Dimerisation domain |
2.9E-05 |
29-101 / 19-78 |
PF01316.20 |
Arginine repressor, DNA binding domain |
3.6E-05 |
28-83 / 5-55 |
PF05331.10 |
Protein of unknown function (DUF742) |
3.7E-05 |
24-83 / 37-87 |
PF14338.5 |
Mrr N-terminal domain |
3.9E-05 |
31-102 / 21-85 |
PF09182.9 |
Bacterial purine repressor, N-terminal |
5.9E-05 |
48-82 / 19-58 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
6.6E-05 |
24-83 / 12-68 |
PF15977.4 |
Winged helix-turn-helix DNA binding |
6.6E-05 |
49-83 / 23-57 |
PF03297.14 |
S25 ribosomal protein |
0.0001 |
48-82 / 55-89 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.00011 |
51-82 / 13-47 |
PF00392.20 |
Bacterial regulatory proteins, gntR family |
0.00011 |
48-83 / 22-58 |
PF14502.5 |
Helix-turn-helix domain |
0.00012 |
48-83 / 5-40 |
PF08220.11 |
DeoR-like helix-turn-helix domain |
0.00012 |
48-83 / 13-48 |
PF13545.5 |
Crp-like helix-turn-helix domain |
0.00013 |
48-82 / 26-60 |
PF01325.18 |
Iron dependent repressor, N-terminal DNA binding domain |
0.00016 |
48-83 / 20-55 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
0.00017 |
24-73 / 16-75 |
PF16509.4 |
TrfB plasmid transcriptional repressor |
0.0002 |
49-99 / 31-82 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
0.00023 |
51-106 / 2-56 |
PF08279.11 |
HTH domain |
0.00024 |
48-77 / 14-43 |
PF11972.7 |
HTH DNA binding domain |
0.00027 |
48-80 / 12-41 |
PF07900.10 |
Protein of unknown function (DUF1670) |
0.00031 |
48-83 / 94-129 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.00036 |
48-73 / 16-41 |
PF05043.12 |
Mga helix-turn-helix domain |
0.00047 |
29-76 / 17-57 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.0006 |
51-79 / 4-32 |
PF09821.8 |
C-terminal AAA-associated domain |
0.00061 |
54-103 / 2-45 |
PF09397.9 |
Ftsk gamma domain |
0.00075 |
48-83 / 18-53 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.00087 |
48-82 / 7-50 |
PF07183.10 |
Protein of unknown function (DUF1403) |
0.00095 |
29-83 / 275-320 |
PF09756.8 |
DDRGK domain |
0.0013 |
48-100 / 114-164 |
PF09681.9 |
N-terminal phage replisome organiser (Phage_rep_org_N) |
0.0013 |
50-82 / 54-86 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
0.0016 |
49-76 / 19-46 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
0.0027 |
49-75 / 23-49 |
PF11427.7 |
Tc3 transposase |
0.0032 |
49-77 / 20-48 |
PF06971.12 |
Putative DNA-binding protein N-terminus |
0.0034 |
49-70 / 27-48 |
PF08280.10 |
M protein trans-acting positive regulator (MGA) HTH domain |
0.0038 |
48-76 / 19-47 |
PF04545.15 |
Sigma-70, region 4 |
0.0041 |
26-74 / 5-49 |
PF04967.11 |
HTH DNA binding domain |
0.0043 |
49-75 / 23-49 |
PF08679.10 |
Dissimilatory sulfite reductase D (DsrD) |
0.0043 |
49-83 / 16-51 |
PF04458.11 |
Protein of unknown function (DUF505) |
0.0049 |
25-105 / 490-559 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
0.0049 |
49-72 / 16-39 |
PF03333.12 |
Adhesin biosynthesis transcription regulatory protein |
0.0057 |
49-76 / 55-82 |
PF07638.10 |
ECF sigma factor |
0.0058 |
26-74 / 134-174 |
PF07453.12 |
NUMOD1 domain |
0.0073 |
49-70 / 19-40 |
PF11994.7 |
Protein of unknown function (DUF3489) |
0.0077 |
48-77 / 20-49 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
0.0083 |
49-81 / 13-45 |