phrog_23842 is made of 3 protein sequences and is annotated as "unknown function"
Functional category: unknown function


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
327 354 317


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p15135 no NCBI prot ID no annotation VI_02558 Gammaproteobacteria_gi_490878602 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p26639 no NCBI prot ID no annotation VI_02566 Gammaproteobacteria_gi_490981638 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p16422 no NCBI prot ID no annotation VI_02564 Gammaproteobacteria_gi_490949770 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_409 312 transcriptional regulator transcription regulation 3 2.12E-13 3.79
phrog_50 1303 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 3 6.54E-11 1.31

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_11718 no annotation unknown function 96.4 4.3E-05 23-112 / 10-101
phrog_1456 DNA binding protein DNA, RNA and nucleotide metabolism 95.6 0.00045 46-108 / 1-62
phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 91.0 0.042 21-111 / 3-105
phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 96.1 0.00014 22-114 / 2-94
phrog_37920 HTH DNA binding protein DNA, RNA and nucleotide metabolism 96.4 4.5E-05 25-101 / 12-88
phrog_4221 replication initiation protein DNA, RNA and nucleotide metabolism 93.7 0.0071 23-103 / 11-91
phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 97.3 1E-06 21-112 / 9-101
phrog_4707 replication initiation protein DNA, RNA and nucleotide metabolism 95.3 0.00086 13-186 / 6-200

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF04492.12 Bacteriophage replication protein O 3.3E-05 34-102 / 7-83
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.00016 36-92 / 2-75
PF16221.4 winged helix-turn-helix 0.00065 52-100 / 32-78
PF02319.19 E2F/DP family winged-helix DNA-binding domain 0.001 67-102 / 22-57
PF06926.10 Putative replisome organiser protein C-terminus 0.0012 187-256 / 4-81
PF10007.8 Uncharacterized protein conserved in archaea (DUF2250) 0.0014 50-102 / 7-56
PF08221.10 RNA polymerase III subunit RPC82 helix-turn-helix domain 0.0015 49-101 / 11-60
PF01726.15 LexA DNA binding domain 0.0016 69-102 / 26-60
PF03428.12 Replication protein C N-terminal domain 0.0019 39-102 / 31-105
PF05732.10 Firmicute plasmid replication protein (RepL) 0.002 41-102 / 44-109
PF09681.9 N-terminal phage replisome organiser (Phage_rep_org_N) 0.0021 70-119 / 55-100
PF08784.10 Replication protein A C terminal 0.0026 48-102 / 37-95
PF07381.10 Winged helix DNA-binding domain (DUF1495) 0.0028 49-102 / 7-68
PF05584.10 Sulfolobus plasmid regulatory protein 0.0028 49-102 / 4-52
PF03965.15 Penicillinase repressor 0.0028 52-102 / 4-57
PF12802.6 MarR family 0.003 69-102 / 22-55
PF13730.5 Helix-turn-helix domain 0.0032 49-98 / 3-52
PF09012.9 FeoC like transcriptional regulator 0.0034 69-103 / 15-49
PF09114.9 Transcription factor MotA, activation domain 0.0036 47-102 / 12-65
PF03551.13 Transcriptional regulator PadR-like family 0.0037 69-102 / 15-50
PF04079.15 Segregation and condensation complex subunit ScpB 0.0043 46-103 / 78-129
PF05491.12 Holliday junction DNA helicase ruvB C-terminus 0.0045 49-102 / 6-60
PF01978.18 Sugar-specific transcriptional regulator TrmB 0.0048 49-102 / 6-56
PF11313.7 Protein of unknown function (DUF3116) 0.0055 77-103 / 36-62
PF08222.10 CodY helix-turn-helix domain 0.0057 69-102 / 5-38
PF04182.11 B-block binding subunit of TFIIIC 0.0057 69-102 / 19-52
PF14557.5 Putative AphA-like transcriptional regulator 0.0058 47-102 / 4-67
PF14394.5 Domain of unknown function (DUF4423) 0.0062 69-102 / 37-72
PF01047.21 MarR family 0.0063 69-102 / 18-51
PF02295.16 Adenosine deaminase z-alpha domain 0.0072 69-102 / 19-53
PF13463.5 Winged helix DNA-binding domain 0.0074 69-102 / 18-51

Annotations of the NCBI proteins of this PHROG


no RefSeq proteins in this PHROG (only proteins from VirSorter contigs)

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006281 DNA repair
GO:0005667 transcription factor complex
GO:0004252 serine-type endopeptidase activity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0006260 DNA replication
GO:0003723 RNA binding
GO:0006355 regulation of transcription, DNA-templated
GO:0051304 chromosome separation
GO:0009378 four-way junction helicase activity
GO:0003726 double-stranded RNA adenosine deaminase activity
GO:0003677 DNA binding
GO:0006310 DNA recombination
GO:0006508 proteolysis
GO:0003700 DNA binding transcription factor activity
GO:0006276 plasmid maintenance

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