phrog_24579 is made of 3 protein sequences and is annotated as "terminase small subunit"
Functional category: head and packaging


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
121.33 126 126


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
KP836356_p30 AJW76985.1 hypothetical protein KP836356 Marinitoga camini virus 2 (MCV2) Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
KP836355_p12 AJW76901.1 hypothetical protein KP836355 Marinitoga camini virus 1 (MCV1) Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p375448 no NCBI prot ID no annotation VI_01246 Clostridia_gi_547828470 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
no colocalized PHROGS                                                                                          

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 93.2 0.011 29-58 / 156-185
phrog_14025 no annotation unknown function 91.0 0.043 31-57 / 30-56
phrog_14982 no annotation unknown function 95.1 0.0012 22-60 / 19-59
phrog_151 transposase integration and excision 95.7 0.0004 29-57 / 21-49
phrog_1553 excisionase integration and excision 93.8 0.0069 33-52 / 6-25
phrog_157 transposase integration and excision 94.2 0.0044 37-72 / 1-41
phrog_16553 transcriptional repressor transcription regulation 91.2 0.039 31-51 / 22-42
phrog_1740 RNA polymerase sigma factor transcription regulation 91.9 0.027 13-53 / 126-164
phrog_1889 terminase small subunit head and packaging 90.0 0.064 19-64 / 10-55
phrog_21036 no annotation unknown function 94.2 0.0043 37-55 / 1-19
phrog_2474 MerR-like transcriptional regulator transcription regulation 90.6 0.051 27-55 / 11-39
phrog_2538 terminase small subunit head and packaging 99.2 1E-14 13-74 / 3-62
phrog_268 no annotation unknown function 93.8 0.0064 30-65 / 15-52
phrog_2727 no annotation unknown function 93.2 0.011 30-58 / 24-52
phrog_2907 excisionase integration and excision 92.3 0.021 29-60 / 3-34
phrog_309 terminase small subunit head and packaging 97.3 1.1E-06 33-101 / 26-117
phrog_3218 terminase small subunit head and packaging 96.3 6.7E-05 12-68 / 17-70
phrog_3470 no annotation unknown function 91.1 0.041 29-53 / 4-28
phrog_3502 no annotation unknown function 93.2 0.011 12-53 / 2-48
phrog_3512 sigma factor transcription regulation 91.7 0.03 13-51 / 66-102
phrog_351 RNA polymerase sigma factor transcription regulation 91.4 0.036 13-52 / 175-215
phrog_35 transcriptional repressor transcription regulation 94.7 0.0022 29-54 / 11-36
phrog_36 transcriptional regulator transcription regulation 90.9 0.045 31-62 / 105-134
phrog_3 transcriptional repressor transcription regulation 95.0 0.0015 29-55 / 14-40
phrog_4044 terminase small subunit head and packaging 93.1 0.013 25-89 / 24-85
phrog_409 transcriptional regulator transcription regulation 95.5 0.0006 30-60 / 9-40
phrog_4102 terminase small subunit head and packaging 96.6 2.5E-05 15-100 / 13-102
phrog_4291 RNA-dependent RNA polymerase DNA, RNA and nucleotide metabolism 91.7 0.03 15-54 / 870-906
phrog_4494 no annotation unknown function 95.2 0.001 29-85 / 15-68
phrog_4779 transcriptional regulator transcription regulation 94.0 0.0056 30-57 / 13-40
phrog_4869 no annotation unknown function 95.6 0.00047 25-74 / 4-63
phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 93.4 0.0097 33-54 / 27-48
phrog_57 terminase small subunit head and packaging 91.3 0.037 31-58 / 2-29
phrog_606 terminase small subunit head and packaging 94.0 0.0053 18-92 / 53-119
phrog_645 Rnase E DNA, RNA and nucleotide metabolism 92.0 0.025 9-93 / 16-99
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 95.6 0.00048 12-59 / 51-96
phrog_66 excisionase and transcriptional regulator integration and excision 96.8 8.7E-06 26-58 / 4-36
phrog_7344 terminase small subunit head and packaging 98.4 2.7E-10 8-106 / 5-107
phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 92.2 0.023 29-56 / 16-43
phrog_7676 no annotation unknown function 92.1 0.024 31-56 / 16-41
phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 93.5 0.0093 31-55 / 18-41
phrog_836 late transcriptional activator transcription regulation 91.5 0.034 29-57 / 107-135
phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 91.4 0.034 30-55 / 16-41
phrog_8 transcriptional regulator transcription regulation 95.0 0.0015 30-54 / 13-36
phrog_9129 no annotation unknown function 91.2 0.039 16-58 / 71-112
phrog_9759 DNA binding protein DNA, RNA and nucleotide metabolism 94.9 0.0016 32-54 / 19-41

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF11112.7 Pyocin activator protein PrtN 5.9E-07 30-78 / 12-67
PF07141.10 Putative bacteriophage terminase small subunit 1.7E-06 21-54 / 21-54
PF12964.6 Protein of unknown function (DUF3853) 4.5E-06 29-70 / 43-86
PF07618.10 Protein of unknown function (DUF1580) 5E-06 35-77 / 6-53
PF10743.8 Regulatory phage protein cox 1E-05 29-60 / 9-40
PF07750.10 GcrA cell cycle regulator 1.4E-05 21-55 / 8-43
PF09035.9 Excisionase from transposon Tn916 1.9E-05 30-58 / 14-43
PF12728.6 Helix-turn-helix domain 2E-05 32-60 / 2-31
PF06806.11 Putative excisionase (DUF1233) 2.8E-05 30-56 / 8-33
PF07825.10 Excisionase-like protein 2.9E-05 32-64 / 3-39
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 6.8E-05 27-54 / 9-36
PF10654.8 Protein of unknown function (DUF2481) 6.9E-05 26-54 / 75-103
PF17443.1 Uncharacterized protein pXO2-72 7.8E-05 30-56 / 7-33
PF00292.17 'Paired box' domain 8.2E-05 23-54 / 25-56
PF04936.11 Protein of unknown function (DUF658) 0.0023 30-59 / 87-116
PF05344.10 Domain of Unknown Function (DUF746) 9.9E-05 28-54 / 9-35
PF13591.5 MerR HTH family regulatory protein 0.00012 32-59 / 1-28
PF07278.10 Protein of unknown function (DUF1441) 0.00012 31-56 / 1-26
PF13309.5 HTH domain 0.00012 32-53 / 42-63
PF07471.11 Phage DNA packaging protein Nu1 0.00013 32-59 / 3-29
PF12759.6 InsA C-terminal domain 0.00013 27-54 / 17-44
PF09607.9 Brinker DNA-binding domain 0.00013 32-54 / 26-48
PF01710.15 Transposase 0.00018 24-54 / 11-41
PF08822.10 Protein of unknown function (DUF1804) 0.0002 29-54 / 17-42
PF13411.5 MerR HTH family regulatory protein 0.00025 32-58 / 1-27
PF00376.22 MerR family regulatory protein 0.00025 33-57 / 1-25
PF01381.21 Helix-turn-helix 0.00026 29-54 / 7-32
PF06322.10 Phage NinH protein 0.00027 29-55 / 14-40
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 0.00032 31-58 / 3-31
PF02796.14 Helix-turn-helix domain of resolvase 0.00034 29-53 / 19-43
PF08765.10 Mor transcription activator family 0.00039 30-54 / 71-95
PF07453.12 NUMOD1 domain 0.00039 31-52 / 19-40
PF16677.4 DNA-packaging protein gp3 0.0004 30-54 / 28-52
PF04552.12 Sigma-54, DNA binding domain 0.00041 28-55 / 45-72
PF00356.20 Bacterial regulatory proteins, lacI family 0.00042 33-54 / 1-22
PF13011.5 leucine-zipper of insertion element IS481 0.00047 28-54 / 21-47
PF08535.9 KorB domain 0.00056 30-55 / 2-27
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.00065 20-54 / 93-130
PF02954.18 Bacterial regulatory protein, Fis family 0.00067 30-53 / 15-38
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.00067 29-54 / 17-42
PF14493.5 Helix-turn-helix domain 0.00075 28-54 / 9-35
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00075 28-54 / 52-78
PF04218.12 CENP-B N-terminal DNA-binding domain 0.00086 31-54 / 23-46
PF13022.5 Helix-turn-helix of insertion element transposase 0.00085 31-55 / 25-49
PF13936.5 Helix-turn-helix domain 0.00091 28-53 / 17-42
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.00097 29-54 / 25-49
PF06627.10 Protein of unknown function (DUF1153) 0.001 29-54 / 44-69
PF13413.5 Helix-turn-helix domain 0.0012 29-54 / 7-32
PF11242.7 Protein of unknown function (DUF2774) 0.0013 28-54 / 11-37
PF10975.7 Protein of unknown function (DUF2802) 0.0017 18-52 / 30-64
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.0019 33-53 / 53-73
PF15978.4 Tn7-like transposition protein D 0.0019 30-54 / 202-226
PF10668.8 Phage terminase small subunit 0.0019 31-54 / 22-45
PF02042.14 RWP-RK domain 0.002 29-55 / 10-36
PF07638.10 ECF sigma factor 0.0021 28-54 / 146-172
PF13518.5 Helix-turn-helix domain 0.0021 30-54 / 10-34
PF05225.15 helix-turn-helix, Psq domain 0.0022 29-54 / 14-40
PF02319.19 E2F/DP family winged-helix DNA-binding domain 0.0021 30-54 / 22-46
PF05331.10 Protein of unknown function (DUF742) 0.0021 30-54 / 52-76
PF01371.18 Trp repressor protein 0.0025 27-54 / 44-71
PF07037.10 Putative transcription regulator (DUF1323) 0.0026 32-54 / 1-23
PF13556.5 PucR C-terminal helix-turn-helix domain 0.0027 29-54 / 10-35
PF12116.7 Stage III sporulation protein D 0.0027 30-54 / 18-42
PF13412.5 Winged helix-turn-helix DNA-binding 0.0028 30-54 / 16-40
PF11427.7 Tc3 transposase 0.0028 29-54 / 18-43
PF01527.19 Transposase 0.003 29-55 / 19-45
PF00440.22 Bacterial regulatory proteins, tetR family 0.003 32-54 / 16-38
PF07506.10 RepB plasmid partitioning protein 0.0031 24-54 / 14-44
PF13404.5 AsnC-type helix-turn-helix domain 0.0033 30-53 / 16-39
PF06971.12 Putative DNA-binding protein N-terminus 0.0036 31-52 / 27-48
PF13384.5 Homeodomain-like domain 0.0039 29-54 / 15-40
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 0.0046 29-54 / 21-46
PF08281.11 Sigma-70, region 4 0.005 29-54 / 24-49
PF16509.4 TrfB plasmid transcriptional repressor 0.0057 28-54 / 28-54
PF08222.10 CodY helix-turn-helix domain 0.0067 30-54 / 3-27
PF13551.5 Winged helix-turn helix 0.0071 29-54 / 9-34
PF08004.10 Protein of unknown function (DUF1699) 0.007 20-52 / 93-129
PF00325.19 Bacterial regulatory proteins, crp family 0.0073 32-54 / 3-25
PF00126.26 Bacterial regulatory helix-turn-helix protein, lysR family 0.0073 31-54 / 11-34
PF06413.10 Neugrin 0.0072 19-54 / 14-52
PF04545.15 Sigma-70, region 4 0.0077 30-54 / 23-47

Annotations of the NCBI proteins of this PHROG


2:hypothetical protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0016987 sigma factor activity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0005667 transcription factor complex
GO:0005622 intracellular
GO:0003677 DNA binding
GO:0006310 DNA recombination
GO:0003700 DNA binding transcription factor activity
GO:0000150 recombinase activity
GO:0006313 transposition, DNA-mediated
GO:0019069 viral capsid assembly
GO:0051775 response to redox state
GO:0006352 DNA-templated transcription, initiation
GO:0006355 regulation of transcription, DNA-templated
GO:0005737 cytoplasm
GO:0004803 transposase activity
GO:0043565 sequence-specific DNA binding
GO:0005524 ATP binding

Loading in process