ID |
Definition |
Evalue |
posQ/posS |
PF13011.5 |
leucine-zipper of insertion element IS481 |
3.1E-07 |
32-69 / 22-52 |
PF07141.10 |
Putative bacteriophage terminase small subunit |
3.6E-07 |
24-67 / 21-57 |
PF08822.10 |
Protein of unknown function (DUF1804) |
4.7E-07 |
23-69 / 7-47 |
PF00292.17 |
'Paired box' domain |
6.9E-07 |
23-68 / 22-60 |
PF05344.10 |
Domain of Unknown Function (DUF746) |
1.2E-06 |
32-67 / 10-38 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
1.3E-06 |
26-68 / 5-40 |
PF16087.4 |
Domain of unknown function (DUF4817) |
1.4E-06 |
31-69 / 13-52 |
PF09607.9 |
Brinker DNA-binding domain |
1.7E-06 |
24-67 / 11-51 |
PF06627.10 |
Protein of unknown function (DUF1153) |
2.2E-06 |
23-69 / 34-74 |
PF01710.15 |
Transposase |
2.3E-06 |
24-67 / 8-44 |
PF12759.6 |
InsA C-terminal domain |
5.7E-06 |
26-65 / 13-45 |
PF13518.5 |
Helix-turn-helix domain |
1E-05 |
33-69 / 10-39 |
PF04936.11 |
Protein of unknown function (DUF658) |
0.0024 |
35-65 / 89-112 |
PF10668.8 |
Phage terminase small subunit |
1.8E-05 |
34-68 / 22-49 |
PF14493.5 |
Helix-turn-helix domain |
1.8E-05 |
31-69 / 9-40 |
PF13542.5 |
Helix-turn-helix domain of transposase family ISL3 |
2.1E-05 |
27-65 / 20-50 |
PF07750.10 |
GcrA cell cycle regulator |
2.1E-05 |
25-66 / 9-44 |
PF13551.5 |
Winged helix-turn helix |
2.6E-05 |
33-69 / 10-39 |
PF08765.10 |
Mor transcription activator family |
5.3E-05 |
33-67 / 71-98 |
PF06322.10 |
Phage NinH protein |
5.9E-05 |
34-67 / 16-42 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
6.5E-05 |
35-69 / 18-45 |
PF01527.19 |
Transposase |
7.4E-05 |
32-66 / 19-46 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
9.4E-05 |
36-67 / 25-49 |
PF11427.7 |
Tc3 transposase |
0.00011 |
33-69 / 19-48 |
PF02796.14 |
Helix-turn-helix domain of resolvase |
0.00011 |
33-64 / 20-44 |
PF01371.18 |
Trp repressor protein |
0.00012 |
27-67 / 41-74 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
0.00014 |
33-67 / 18-45 |
PF16677.4 |
DNA-packaging protein gp3 |
0.00015 |
33-65 / 28-53 |
PF13309.5 |
HTH domain |
0.00015 |
35-63 / 42-63 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
0.00018 |
34-65 / 16-40 |
PF04552.12 |
Sigma-54, DNA binding domain |
0.00023 |
32-66 / 46-73 |
PF13411.5 |
MerR HTH family regulatory protein |
0.00024 |
49-66 / 8-25 |
PF13936.5 |
Helix-turn-helix domain |
0.00025 |
32-64 / 18-43 |
PF05225.15 |
helix-turn-helix, Psq domain |
0.00026 |
34-68 / 16-44 |
PF13556.5 |
PucR C-terminal helix-turn-helix domain |
0.0003 |
34-67 / 12-38 |
PF10654.8 |
Protein of unknown function (DUF2481) |
0.00029 |
33-65 / 79-104 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.00039 |
35-62 / 9-29 |
PF13384.5 |
Homeodomain-like domain |
0.0004 |
33-65 / 16-41 |
PF15978.4 |
Tn7-like transposition protein D |
0.00044 |
33-67 / 202-229 |
PF07618.10 |
Protein of unknown function (DUF1580) |
0.00065 |
50-65 / 11-26 |
PF01381.21 |
Helix-turn-helix |
0.00071 |
33-64 / 8-32 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.00073 |
50-69 / 11-30 |
PF08535.9 |
KorB domain |
0.00079 |
34-67 / 3-29 |
PF11112.7 |
Pyocin activator protein PrtN |
0.00082 |
36-64 / 15-37 |
PF06806.11 |
Putative excisionase (DUF1233) |
0.00086 |
36-63 / 11-31 |
PF00376.22 |
MerR family regulatory protein |
0.00087 |
49-64 / 7-22 |
PF11242.7 |
Protein of unknown function (DUF2774) |
0.00088 |
31-67 / 11-40 |
PF05331.10 |
Protein of unknown function (DUF742) |
0.00093 |
27-68 / 47-80 |
PF02042.14 |
RWP-RK domain |
0.00095 |
34-67 / 12-38 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.0011 |
35-68 / 12-38 |
PF00356.20 |
Bacterial regulatory proteins, lacI family |
0.0012 |
48-64 / 6-22 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.0012 |
35-65 / 18-41 |
PF13591.5 |
MerR HTH family regulatory protein |
0.0013 |
49-64 / 8-23 |
PF07825.10 |
Excisionase-like protein |
0.0016 |
50-64 / 11-27 |
PF07453.12 |
NUMOD1 domain |
0.0017 |
36-62 / 21-40 |
PF05930.11 |
Prophage CP4-57 regulatory protein (AlpA) |
0.002 |
50-63 / 12-25 |
PF08281.11 |
Sigma-70, region 4 |
0.0022 |
32-66 / 24-51 |
PF10743.8 |
Regulatory phage protein cox |
0.0022 |
36-65 / 13-35 |
PF09035.9 |
Excisionase from transposon Tn916 |
0.0024 |
36-63 / 17-37 |
PF16509.4 |
TrfB plasmid transcriptional repressor |
0.0025 |
33-66 / 30-56 |
PF07278.10 |
Protein of unknown function (DUF1441) |
0.0024 |
50-64 / 10-24 |
PF08222.10 |
CodY helix-turn-helix domain |
0.003 |
50-67 / 13-30 |
PF12964.6 |
Protein of unknown function (DUF3853) |
0.0039 |
49-64 / 53-68 |
PF10007.8 |
Uncharacterized protein conserved in archaea (DUF2250) |
0.0039 |
36-69 / 24-50 |
PF13413.5 |
Helix-turn-helix domain |
0.0042 |
34-64 / 9-32 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
0.0043 |
50-64 / 9-23 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
0.0044 |
34-69 / 18-46 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
0.0046 |
50-69 / 25-44 |
PF00440.22 |
Bacterial regulatory proteins, tetR family |
0.0047 |
50-66 / 24-40 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
0.0047 |
34-69 / 23-51 |
PF12802.6 |
MarR family |
0.005 |
50-69 / 30-49 |
PF00196.18 |
Bacterial regulatory proteins, luxR family |
0.0052 |
33-66 / 16-42 |
PF12728.6 |
Helix-turn-helix domain |
0.0058 |
50-64 / 10-25 |
PF12116.7 |
Stage III sporulation protein D |
0.006 |
34-65 / 19-43 |
PF07471.11 |
Phage DNA packaging protein Nu1 |
0.0076 |
50-64 / 11-25 |
PF04297.13 |
Putative helix-turn-helix protein, YlxM / p13 like |
0.008 |
32-66 / 31-58 |
PF13171.5 |
Protein of unknown function (DUF4004) |
0.0081 |
50-64 / 11-25 |
PF09012.9 |
FeoC like transcriptional regulator |
0.0083 |
36-69 / 16-42 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.009 |
34-67 / 34-60 |