phrog_28310 is made of 2 protein sequences and is annotated as "unknown function"
Functional category: unknown function


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
76 76 76


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
AY855346_p79 AAX53455.1 hypothetical protein AY855346 Clostridium virus phiCD119 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.
NC_007917_p79 YP_529630.1 hypothetical protein NC_007917 Clostridium virus phiCD119 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_37271 2 no annotation unknown function 2 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_14025 no annotation unknown function 93.1 0.013 23-46 / 30-53
phrog_151 transposase integration and excision 92.9 0.014 21-52 / 21-52
phrog_2538 terminase small subunit head and packaging 94.8 0.002 9-47 / 5-43
phrog_309 terminase small subunit head and packaging 99.8 4.8E-23 2-70 / 5-71
phrog_4102 terminase small subunit head and packaging 94.4 0.0035 9-46 / 12-49
phrog_5751 terminase large subunit head and packaging 92.0 0.026 22-46 / 17-41
phrog_66 excisionase and transcriptional regulator integration and excision 91.3 0.036 22-48 / 8-34
phrog_7344 terminase small subunit head and packaging 94.2 0.0044 24-45 / 27-48
phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 90.1 0.063 20-47 / 15-42

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF07141.10 Putative bacteriophage terminase small subunit 7.9E-10 13-53 / 21-61
PF16677.4 DNA-packaging protein gp3 1.3E-07 22-55 / 28-61
PF07750.10 GcrA cell cycle regulator 2.4E-07 10-48 / 5-44
PF09607.9 Brinker DNA-binding domain 2.7E-07 11-50 / 9-52
PF12759.6 InsA C-terminal domain 5.1E-07 13-46 / 11-44
PF01710.15 Transposase 0.0061 22-47 / 69-94
PF00292.17 'Paired box' domain 9.7E-07 10-48 / 20-58
PF08822.10 Protein of unknown function (DUF1804) 1E-06 12-48 / 7-44
PF13011.5 leucine-zipper of insertion element IS481 1.2E-06 12-50 / 12-51
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 1.3E-06 18-48 / 8-38
PF04218.12 CENP-B N-terminal DNA-binding domain 2.1E-06 23-50 / 23-50
PF05344.10 Domain of Unknown Function (DUF746) 2.1E-06 20-50 / 9-39
PF02796.14 Helix-turn-helix domain of resolvase 2.3E-06 18-46 / 16-44
PF10654.8 Protein of unknown function (DUF2481) 2.1E-06 17-47 / 74-104
PF00440.22 Bacterial regulatory proteins, tetR family 2.4E-06 24-51 / 16-43
PF13022.5 Helix-turn-helix of insertion element transposase 2.7E-06 22-47 / 24-49
PF04936.11 Protein of unknown function (DUF658) 0.00017 22-47 / 87-112
PF13542.5 Helix-turn-helix domain of transposase family ISL3 4.9E-06 15-46 / 19-49
PF04552.12 Sigma-54, DNA binding domain 4.8E-06 20-48 / 45-73
PF13936.5 Helix-turn-helix domain 6E-06 16-45 / 13-42
PF13309.5 HTH domain 6.6E-06 24-45 / 42-63
PF12824.6 Mitochondrial ribosomal protein subunit L20 8.3E-06 7-48 / 88-132
PF03333.12 Adhesin biosynthesis transcription regulatory protein 8.6E-06 19-48 / 51-80
PF00356.20 Bacterial regulatory proteins, lacI family 1E-05 25-49 / 1-25
PF06322.10 Phage NinH protein 9.9E-06 22-49 / 15-42
PF10668.8 Phage terminase small subunit 1.1E-05 23-49 / 22-48
PF08765.10 Mor transcription activator family 1.2E-05 22-49 / 71-98
PF11427.7 Tc3 transposase 1.3E-05 18-48 / 15-45
PF01381.21 Helix-turn-helix 1.4E-05 21-47 / 7-33
PF14493.5 Helix-turn-helix domain 1.6E-05 19-49 / 8-38
PF17443.1 Uncharacterized protein pXO2-72 1.7E-05 22-48 / 7-33
PF07638.10 ECF sigma factor 2.1E-05 17-47 / 143-173
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 2.2E-05 22-49 / 18-45
PF02954.18 Bacterial regulatory protein, Fis family 2.2E-05 22-46 / 15-39
PF15978.4 Tn7-like transposition protein D 2.2E-05 14-49 / 193-229
PF05331.10 Protein of unknown function (DUF742) 3E-05 16-47 / 47-77
PF08535.9 KorB domain 3.4E-05 22-48 / 2-28
PF01527.19 Transposase 3.5E-05 21-48 / 19-46
PF13411.5 MerR HTH family regulatory protein 3.6E-05 25-48 / 2-25
PF11112.7 Pyocin activator protein PrtN 4.1E-05 22-47 / 12-38
PF06627.10 Protein of unknown function (DUF1153) 4.5E-05 22-50 / 45-73
PF08004.10 Protein of unknown function (DUF1699) 4.6E-05 9-44 / 90-129
PF07453.12 NUMOD1 domain 4.9E-05 23-43 / 19-39
PF02319.19 E2F/DP family winged-helix DNA-binding domain 5.1E-05 22-50 / 22-50
PF06806.11 Putative excisionase (DUF1233) 5.1E-05 24-45 / 10-31
PF13518.5 Helix-turn-helix domain 5.3E-05 22-49 / 10-37
PF00376.22 MerR family regulatory protein 6.2E-05 26-47 / 2-23
PF13591.5 MerR HTH family regulatory protein 6.2E-05 24-46 / 1-23
PF13556.5 PucR C-terminal helix-turn-helix domain 6.6E-05 21-49 / 10-38
PF13413.5 Helix-turn-helix domain 6.9E-05 21-47 / 7-33
PF07278.10 Protein of unknown function (DUF1441) 6.9E-05 23-47 / 1-25
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 7.7E-05 23-45 / 3-25
PF13412.5 Winged helix-turn-helix DNA-binding 7.8E-05 22-48 / 16-42
PF08281.11 Sigma-70, region 4 8.1E-05 20-46 / 23-49
PF13384.5 Homeodomain-like domain 8.3E-05 19-47 / 13-41
PF16509.4 TrfB plasmid transcriptional repressor 8.4E-05 20-48 / 28-56
PF10975.7 Protein of unknown function (DUF2802) 8.3E-05 12-44 / 32-64
PF09035.9 Excisionase from transposon Tn916 9E-05 22-47 / 14-39
PF05225.15 helix-turn-helix, Psq domain 9.9E-05 21-47 / 14-41
PF04545.15 Sigma-70, region 4 0.0001 22-46 / 23-47
PF10743.8 Regulatory phage protein cox 0.00011 22-47 / 10-35
PF07825.10 Excisionase-like protein 0.00011 24-47 / 3-28
PF13404.5 AsnC-type helix-turn-helix domain 0.00012 22-46 / 16-40
PF13551.5 Winged helix-turn helix 0.00014 21-50 / 9-38
PF01371.18 Trp repressor protein 0.00015 19-48 / 44-73
PF02042.14 RWP-RK domain 0.00015 22-47 / 11-36
PF11242.7 Protein of unknown function (DUF2774) 0.00016 20-48 / 11-39
PF12116.7 Stage III sporulation protein D 0.00016 22-47 / 18-43
PF06413.10 Neugrin 0.00017 6-46 / 9-52
PF00126.26 Bacterial regulatory helix-turn-helix protein, lysR family 0.0002 22-49 / 10-37
PF12728.6 Helix-turn-helix domain 0.00021 24-46 / 2-25
PF07037.10 Putative transcription regulator (DUF1323) 0.00023 25-46 / 2-23
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.00024 20-47 / 30-57
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.00024 25-46 / 53-74
PF12964.6 Protein of unknown function (DUF3853) 0.00025 23-47 / 45-69
PF04967.11 HTH DNA binding domain 0.00026 24-48 / 24-48
PF06971.12 Putative DNA-binding protein N-terminus 0.00026 23-44 / 27-48
PF00325.19 Bacterial regulatory proteins, crp family 0.00034 24-47 / 3-26
PF05043.12 Mga helix-turn-helix domain 0.00036 23-50 / 30-57
PF06530.11 Phage antitermination protein Q 0.00036 16-47 / 72-103
PF07374.10 Protein of unknown function (DUF1492) 0.0004 20-46 / 68-94
PF08222.10 CodY helix-turn-helix domain 0.00043 23-49 / 4-30
PF07471.11 Phage DNA packaging protein Nu1 0.00042 24-46 / 3-25
PF00196.18 Bacterial regulatory proteins, luxR family 0.00045 20-48 / 14-42
PF02001.15 Protein of unknown function DUF134 0.00047 21-47 / 45-71
PF07506.10 RepB plasmid partitioning protein 0.00047 18-47 / 16-45
PF13443.5 Cro/C1-type HTH DNA-binding domain 0.00052 22-46 / 9-34
PF12793.6 Sugar transport-related sRNA regulator N-term 0.00069 21-49 / 16-44
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 0.00072 21-47 / 21-47
PF16264.4 SatD family (SatD) 0.00076 22-46 / 170-194
PF16221.4 winged helix-turn-helix 0.00077 23-49 / 46-72
PF09862.8 Protein of unknown function (DUF2089) 0.00088 20-48 / 46-74
PF12802.6 MarR family 0.00091 24-49 / 22-47
PF08279.11 HTH domain 0.00091 22-50 / 14-42
PF09182.9 Bacterial purine repressor, N-terminal 0.001 22-49 / 19-46
PF01418.16 Helix-turn-helix domain, rpiR family 0.001 23-47 / 34-58
PF07618.10 Protein of unknown function (DUF1580) 0.0011 29-47 / 8-26
PF01022.19 Bacterial regulatory protein, arsR family 0.0011 22-47 / 15-40
PF09012.9 FeoC like transcriptional regulator 0.0012 23-49 / 14-40
PF14549.5 DNA-binding transcriptional regulator Cro 0.0012 22-43 / 9-29
PF05339.10 Protein of unknown function (DUF739) 0.0012 22-47 / 15-40
PF13744.5 Helix-turn-helix domain 0.0014 22-47 / 30-55
PF07022.12 Bacteriophage CI repressor helix-turn-helix domain 0.0015 23-47 / 11-36
PF04492.12 Bacteriophage replication protein O 0.0016 23-50 / 49-76
PF07381.10 Winged helix DNA-binding domain (DUF1495) 0.0017 22-45 / 23-46
PF12844.6 Helix-turn-helix domain 0.0019 22-47 / 11-36
PF15943.4 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 0.0019 25-47 / 10-31
PF08280.10 M protein trans-acting positive regulator (MGA) HTH domain 0.0021 22-49 / 19-46
PF09048.9 Cro 0.0024 22-49 / 12-39
PF10007.8 Uncharacterized protein conserved in archaea (DUF2250) 0.0023 24-49 / 23-48
PF09339.9 IclR helix-turn-helix domain 0.003 24-48 / 19-43
PF08299.10 Bacterial dnaA protein helix-turn-helix 0.0031 22-45 / 43-67
PF00392.20 Bacterial regulatory proteins, gntR family 0.0032 23-48 / 23-49
PF09904.8 Winged helix-turn helix 0.0034 23-49 / 21-47
PF05584.10 Sulfolobus plasmid regulatory protein 0.0038 21-49 / 16-44
PF05269.10 Bacteriophage CII protein 0.0039 22-46 / 22-46
PF07900.10 Protein of unknown function (DUF1670) 0.0042 22-49 / 94-121
PF08221.10 RNA polymerase III subunit RPC82 helix-turn-helix domain 0.0046 22-47 / 26-51
PF13601.5 Winged helix DNA-binding domain 0.0048 22-48 / 13-39
PF14590.5 Domain of unknown function (DUF4447) 0.005 22-47 / 19-44
PF13693.5 Winged helix-turn-helix DNA-binding 0.0051 22-46 / 14-38
PF06892.10 Phage regulatory protein CII (CP76) 0.0055 24-47 / 20-43
PF14056.5 Domain of unknown function (DUF4250) 0.0057 24-47 / 20-43
PF04645.11 Protein of unknown function, DUF603 0.0062 22-47 / 18-47
PF11985.7 Protein of unknown function (DUF3486) 0.0062 8-55 / 10-64
PF13560.5 Helix-turn-helix domain 0.0064 22-47 / 13-38
PF13463.5 Winged helix DNA-binding domain 0.0066 22-49 / 16-43
PF02082.19 Transcriptional regulator 0.0068 24-50 / 25-51
PF14947.5 Winged helix-turn-helix 0.0069 22-49 / 15-42
PF01047.21 MarR family 0.007 23-48 / 17-42
PF04703.11 FaeA-like protein 0.0072 22-48 / 13-39
PF11972.7 HTH DNA binding domain 0.0072 22-47 / 12-37
PF13171.5 Protein of unknown function (DUF4004) 0.007 25-47 / 4-26
PF04182.11 B-block binding subunit of TFIIIC 0.0079 22-50 / 17-45
PF15977.4 Winged helix-turn-helix DNA binding 0.0081 23-48 / 23-48

Annotations of the NCBI proteins of this PHROG


2:hypothetical protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0005524 ATP binding
GO:0006270 DNA replication initiation
GO:0043565 sequence-specific DNA binding
GO:0004803 transposase activity
GO:0005737 cytoplasm
GO:0006355 regulation of transcription, DNA-templated
GO:0006352 DNA-templated transcription, initiation
GO:0051775 response to redox state
GO:0019069 viral capsid assembly
GO:0060567 negative regulation of DNA-templated transcription, termination
GO:0000150 recombinase activity
GO:0006313 transposition, DNA-mediated
GO:0003700 DNA binding transcription factor activity
GO:0006310 DNA recombination
GO:0003677 DNA binding
GO:0006275 regulation of DNA replication
GO:0009289 pilus
GO:0006260 DNA replication
GO:0005622 intracellular
GO:0005667 transcription factor complex
GO:0045892 negative regulation of transcription, DNA-templated
GO:0016987 sigma factor activity

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