phrog_2907 is made of 49 protein sequences and is annotated as "excisionase"
Functional category: integration and excision


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
114.92 171 116


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p256170 no NCBI prot ID no annotation VI_09967 Gammaproteobacteria_gi_554966802_5_31341 Viruses.
p116407 no NCBI prot ID no annotation VI_11855 Gammaproteobacteria_gi_553855939_387631_431490 Viruses.
p133423 no NCBI prot ID no annotation VI_11357 Gammaproteobacteria_gi_560997440_713275_755579 Viruses.
p133416 no NCBI prot ID no annotation VI_03648 Gammaproteobacteria_gi_525855729_2068849_2111153 Viruses.
p342237 no NCBI prot ID no annotation VI_09442 Gammaproteobacteria_gi_490363435_0_20971 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p108346 no NCBI prot ID no annotation VI_03320 Gammaproteobacteria_gi_556493183_273839_318621 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p119576 no NCBI prot ID no annotation VI_12062 Gammaproteobacteria_gi_428151337_10236_53780 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p96291 no NCBI prot ID no annotation VI_09436 Gammaproteobacteria_gi_469916444_12488_58013 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p132477 no NCBI prot ID no annotation VI_08483 Gammaproteobacteria_gi_420058116_1051_43430 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p191511 no NCBI prot ID no annotation VI_12088 Gammaproteobacteria_gi_421915755_10236_47317 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p132417 no NCBI prot ID no annotation VI_08446 Gammaproteobacteria_gi_420018216_1278_43657 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p118393 no NCBI prot ID no annotation VI_08498 Gammaproteobacteria_gi_420079881_1511_45160 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p426740 no NCBI prot ID no annotation VI_07902 Gammaproteobacteria_gi_419129770_69658_80835 Viruses.
NC_011976_p24 YP_002533483.1 Excisionase NC_011976 Salmonella phage epsilon34 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
NC_019714_p26 YP_007111979.1 excisionase NC_019714 Enterobacteria phage HK446 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Hendrixvirus.
p145586 no NCBI prot ID no annotation VI_01792 Gammaproteobacteria_gi_545296538_104011_145250 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
NC_019705_p27 YP_007111463.1 excisionase NC_019705 Enterobacteria phage mEpX2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Hendrixvirus.
p159431 no NCBI prot ID no annotation VI_03849 Gammaproteobacteria_gi_218547440_2755040_2795034 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_031019_p52 YP_009279829.1 excisionase NC_031019 Enterobacteria phage UAB_Phi20 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
p152813 no NCBI prot ID no annotation VI_01788 Gammaproteobacteria_gi_545295392_129076_169628 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p145646 no NCBI prot ID no annotation VI_01376 Gammaproteobacteria_gi_545159155_94242_135479 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
p145706 no NCBI prot ID no annotation VI_03926 Gammaproteobacteria_gi_566138399_92388_133625 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
NC_027339_p28 YP_009147475.1 excisionase NC_027339 Enterobacteria phage SfI Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
NC_019927_p7 YP_007237581.1 excisionase NC_019927 Cronobacter phage ENT47670 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_006949_p35 YP_224173.1 gp35 NC_006949 Enterobacteria phage ES18 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p117776 no NCBI prot ID no annotation VI_03455 Gammaproteobacteria_gi_384541581_306986_350684 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
AB426868_p24 BAG12622.1 excision protein AB426868 Salmonella virus P22 (P22) Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
NC_014900_p5 YP_004123764.1 Xis NC_014900 Salmonella phage ST160 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
NC_000935_p40 NP_051001.1 P40 NC_000935 Hamiltonella virus APSE1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
NC_011551_p30 YP_002308543.1 excisionase NC_011551 Bacteriophage APSE-2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
NC_004348_p5 NP_720279.1 excisionase NC_004348 Salmonella phage ST64T Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
NC_016160_p26 YP_004934133.1 excisionase NC_016160 Escherichia phage HK75 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Hendrixvirus.
NC_011802_p5 YP_002455841.1 Xis NC_011802 Salmonella phage SE1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus; Salmonella virus SE1Spa.
NC_002371_p24 NP_059585.1 Xis NC_002371 Salmonella virus P22 (P22) Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
p136511 no NCBI prot ID no annotation VI_08686 Gammaproteobacteria_gi_420329369 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_019720_p25 YP_007112368.1 excisionase NC_019720 Enterobacterial phage mEp213 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_019769_p25 YP_007151760.1 excisionase NC_019769 Enterobacteria phage HK542 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Hendrixvirus.
NC_019706_p25 YP_007111528.1 excisionase NC_019706 Enterobacteria phage mEp043 c-1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p385870 no NCBI prot ID no annotation VI_08692 Gammaproteobacteria_gi_420331654 Viruses.
NC_005841_p5 YP_006361.1 Xis NC_005841 Enterobacteria phage ST104 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
NC_021857_p31 YP_008318509.1 excisionase NC_021857 Shigella phage SfII Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
NC_022749_p29 YP_008766893.1 excisionase NC_022749 Shigella phage SfIV Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
NC_003444_p27 NP_599059.1 excisionase NC_003444 Enterobacteria phage SfV Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p252223 no NCBI prot ID no annotation VI_06426 Gammaproteobacteria_gi_145639936_1961_33637 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p163133 no NCBI prot ID no annotation VI_06681 Gammaproteobacteria_gi_307258129_5362_45102 Viruses; unclassified bacterial viruses.
p130721 no NCBI prot ID no annotation VI_06612 Gammaproteobacteria_gi_260583086 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p112956 no NCBI prot ID no annotation VI_02615 Gammaproteobacteria_gi_329124276_813_45072 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p60604 no NCBI prot ID no annotation VI_12184 Gammaproteobacteria_gi_545595286 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Hpunavirus.
AP018399_p164 BBA65312.1 DNA-binding protein AP018399 Xanthomonas phage XacN1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_1 5879 integrase integration and excision 39 4.74E-63 53.45
phrog_54 1285 DksA-like zinc-finger protein other 7 9.82E-13 3.13
phrog_1229 122 no annotation unknown function 6 4.44E-18 8.47
phrog_2260 66 no annotation unknown function 4 7.08E-14 4.27
phrog_15342 6 no annotation unknown function 3 1.28E-15 6.01

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism 96.8 1.1E-05 3-57 / 18-68
phrog_12527 excisionase integration and excision 95.0 0.0016 6-111 / 30-129
phrog_141 terminase small subunit head and packaging 91.6 0.033 5-62 / 9-61
phrog_151 transposase integration and excision 93.1 0.013 4-27 / 22-45
phrog_15534 HTH DNA binding protein DNA, RNA and nucleotide metabolism 96.1 0.00012 1-54 / 35-82
phrog_1553 excisionase integration and excision 94.3 0.004 2-25 / 1-24
phrog_16553 transcriptional repressor transcription regulation 91.4 0.036 5-31 / 22-47
phrog_1729 no annotation unknown function 93.1 0.013 3-34 / 82-113
phrog_1840 excisionase integration and excision 93.6 0.0084 4-63 / 5-60
phrog_18766 no annotation unknown function 90.0 0.065 5-29 / 9-33
phrog_1969 no annotation unknown function 90.9 0.045 4-30 / 53-79
phrog_2474 MerR-like transcriptional regulator transcription regulation 94.9 0.0018 5-38 / 15-48
phrog_2538 terminase small subunit head and packaging 94.7 0.0024 4-34 / 18-48
phrog_2655 excisionase integration and excision 95.7 0.00039 3-54 / 5-55
phrog_309 terminase small subunit head and packaging 91.6 0.032 5-27 / 24-46
phrog_33310 no annotation unknown function 92.5 0.019 6-38 / 100-132
phrog_3567 no annotation unknown function 90.0 0.065 6-38 / 1-34
phrog_409 transcriptional regulator transcription regulation 92.7 0.017 7-27 / 12-32
phrog_4691 excisionase integration and excision 95.2 0.0011 2-54 / 15-63
phrog_4745 DNA binding protein DNA, RNA and nucleotide metabolism 92.5 0.018 3-37 / 2-41
phrog_4779 transcriptional regulator transcription regulation 91.6 0.032 3-29 / 12-38
phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 92.4 0.02 7-27 / 27-47
phrog_575 Cox-like excisionase and repressor integration and excision 94.6 0.0027 4-36 / 12-44
phrog_57 terminase small subunit head and packaging 96.3 6.1E-05 5-65 / 2-59
phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism 93.2 0.011 2-25 / 11-35
phrog_6058 no annotation unknown function 92.1 0.024 1-67 / 1-59
phrog_6401 DNA binding protein DNA, RNA and nucleotide metabolism 95.9 0.00023 4-55 / 8-55
phrog_6620 transposase integration and excision 95.7 0.00034 4-47 / 2-44
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 92.7 0.017 4-32 / 67-95
phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 94.0 0.0053 3-55 / 34-81
phrog_66 excisionase and transcriptional regulator integration and excision 97.8 4.7E-08 2-58 / 6-58
phrog_7338 no annotation unknown function 93.4 0.0096 3-54 / 28-74
phrog_7506 recombination directionality factor integration and excision 90.6 0.05 4-56 / 13-60
phrog_7676 no annotation unknown function 91.4 0.035 3-30 / 14-41
phrog_7735 excisionase integration and excision 95.6 0.00047 2-59 / 14-67
phrog_8898 no annotation unknown function 90.9 0.045 4-27 / 13-36
phrog_8 transcriptional regulator transcription regulation 90.5 0.052 3-28 / 12-36
phrog_9834 excisionase and transcriptional regulator integration and excision 92.3 0.022 3-40 / 26-63
phrog_989 no annotation unknown function 94.2 0.0042 1-28 / 1-28

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF13591.5 MerR HTH family regulatory protein 1.2E-10 34-102 / 1-62
PF12964.6 Protein of unknown function (DUF3853) 1.7E-09 29-85 / 41-94
PF11112.7 Pyocin activator protein PrtN 2.4E-09 29-87 / 9-69
PF06806.11 Putative excisionase (DUF1233) 2.1E-08 28-86 / 4-68
PF13411.5 MerR HTH family regulatory protein 4.6E-08 34-62 / 1-29
PF10743.8 Regulatory phage protein cox 4.9E-08 28-88 / 6-67
PF17443.1 Uncharacterized protein pXO2-72 9.8E-08 28-57 / 3-32
PF08876.10 Domain of unknown function (DUF1836) 1.1E-07 32-109 / 9-84
PF09035.9 Excisionase from transposon Tn916 1.2E-07 27-85 / 9-64
PF07618.10 Protein of unknown function (DUF1580) 1.2E-07 34-86 / 3-55
PF07825.10 Excisionase-like protein 2.4E-07 33-62 / 2-34
PF12728.6 Helix-turn-helix domain 4.4E-07 33-62 / 1-31
PF07471.11 Phage DNA packaging protein Nu1 8.9E-07 33-88 / 2-57
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 1.9E-06 32-61 / 2-32
PF07278.10 Protein of unknown function (DUF1441) 2.7E-06 33-86 / 1-49
PF00376.22 MerR family regulatory protein 3.7E-06 35-62 / 1-28
PF13171.5 Protein of unknown function (DUF4004) 3.7E-06 33-108 / 2-76
PF16701.4 Adenylate cyclase regulatory domain 6.5E-06 31-106 / 56-123
PF04936.11 Protein of unknown function (DUF658) 0.00094 32-62 / 87-117
PF07453.12 NUMOD1 domain 0.00029 31-54 / 17-40
PF10654.8 Protein of unknown function (DUF2481) 0.00042 31-56 / 78-103
PF07141.10 Putative bacteriophage terminase small subunit 0.00053 31-56 / 29-54
PF06322.10 Phage NinH protein 0.00071 31-58 / 14-41
PF01381.21 Helix-turn-helix 0.00072 30-56 / 6-32
PF00356.20 Bacterial regulatory proteins, lacI family 0.00073 35-57 / 1-23
PF13413.5 Helix-turn-helix domain 0.0012 30-56 / 6-32
PF08535.9 KorB domain 0.0013 32-57 / 2-27
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 0.0013 26-57 / 16-47
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 0.0014 32-56 / 12-36
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.0014 35-55 / 53-73
PF13309.5 HTH domain 0.0015 34-55 / 42-63
PF04552.12 Sigma-54, DNA binding domain 0.0016 30-57 / 45-72
PF02954.18 Bacterial regulatory protein, Fis family 0.0017 32-55 / 15-38
PF07750.10 GcrA cell cycle regulator 0.0018 31-60 / 16-46
PF08765.10 Mor transcription activator family 0.0019 33-57 / 72-96
PF02042.14 RWP-RK domain 0.002 29-57 / 8-36
PF09607.9 Brinker DNA-binding domain 0.0023 34-56 / 26-48
PF05344.10 Domain of Unknown Function (DUF746) 0.0025 32-56 / 11-35
PF09278.10 MerR, DNA binding 0.0026 86-138 / 5-59
PF00292.17 'Paired box' domain 0.0026 31-56 / 31-56
PF07037.10 Putative transcription regulator (DUF1323) 0.0027 34-56 / 1-23
PF08822.10 Protein of unknown function (DUF1804) 0.0029 31-56 / 17-42
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.0029 31-56 / 53-78
PF04218.12 CENP-B N-terminal DNA-binding domain 0.003 33-56 / 23-46
PF02319.19 E2F/DP family winged-helix DNA-binding domain 0.003 31-55 / 21-45
PF12759.6 InsA C-terminal domain 0.0032 32-55 / 20-43
PF06971.12 Putative DNA-binding protein N-terminus 0.0039 33-54 / 27-48
PF13412.5 Winged helix-turn-helix DNA-binding 0.0049 32-56 / 16-40
PF00440.22 Bacterial regulatory proteins, tetR family 0.005 34-56 / 16-38
PF16509.4 TrfB plasmid transcriptional repressor 0.0054 32-56 / 30-54
PF08222.10 CodY helix-turn-helix domain 0.0055 32-56 / 3-27
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.0057 32-56 / 18-42
PF13404.5 AsnC-type helix-turn-helix domain 0.0057 32-55 / 16-39
PF13011.5 leucine-zipper of insertion element IS481 0.0057 31-56 / 22-47
PF12116.7 Stage III sporulation protein D 0.0059 32-57 / 18-43
PF13443.5 Cro/C1-type HTH DNA-binding domain 0.0061 31-56 / 8-34
PF02796.14 Helix-turn-helix domain of resolvase 0.0062 33-55 / 21-43
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.0065 35-56 / 28-49
PF16677.4 DNA-packaging protein gp3 0.0065 31-56 / 27-52
PF13936.5 Helix-turn-helix domain 0.0067 32-55 / 19-42
PF05043.12 Mga helix-turn-helix domain 0.0067 30-56 / 27-53
PF08281.11 Sigma-70, region 4 0.0083 32-56 / 25-49
PF01710.15 Transposase 0.0084 32-56 / 17-41
PF07106.12 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) 0.0083 31-55 / 14-40
PF13022.5 Helix-turn-helix of insertion element transposase 0.0084 32-57 / 24-49
PF14493.5 Helix-turn-helix domain 0.0092 31-56 / 10-35
PF05339.10 Protein of unknown function (DUF739) 0.0093 30-56 / 13-39

Annotations of the NCBI proteins of this PHROG


16:excisionase 3:Xis 1:Excisionase 1:DNA-binding protein 1:excision protein 1:P40

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006352 DNA-templated transcription, initiation
GO:0051775 response to redox state
GO:0006355 regulation of transcription, DNA-templated
GO:0005737 cytoplasm
GO:0007131 reciprocal meiotic recombination
GO:0016987 sigma factor activity
GO:0005667 transcription factor complex
GO:0019069 viral capsid assembly
GO:0045892 negative regulation of transcription, DNA-templated
GO:0003700 DNA binding transcription factor activity
GO:0005524 ATP binding
GO:0000150 recombinase activity
GO:0043565 sequence-specific DNA binding
GO:0006310 DNA recombination
GO:0003677 DNA binding

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