phrog_29500 is made of 2 protein sequences and is annotated as "unknown function"
Functional category: unknown function


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
89 92 92


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_031052_p62 YP_009284833.1 hypothetical protein NC_031052 Gordonia phage Twister6 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Wizardvirus.
NC_030913_p58 YP_009274097.1 hypothetical protein NC_030913 Gordonia phage Wizard Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Wizardvirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_3171 46 replication initiation protein DNA, RNA and nucleotide metabolism 2 5.00E-13 3.42

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1799 no annotation unknown function 92.9 0.014 15-58 / 55-94
phrog_309 terminase small subunit head and packaging 92.6 0.018 13-66 / 2-51

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF08765.10 Mor transcription activator family 3.5E-06 2-66 / 34-98
PF07638.10 ECF sigma factor 5.2E-05 24-69 / 134-178
PF05331.10 Protein of unknown function (DUF742) 8E-05 22-69 / 37-82
PF12759.6 InsA C-terminal domain 0.00011 32-63 / 13-44
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00013 27-68 / 42-83
PF07750.10 GcrA cell cycle regulator 0.00016 28-66 / 6-45
PF08822.10 Protein of unknown function (DUF1804) 0.00018 29-69 / 7-48
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 0.00019 36-68 / 9-41
PF07141.10 Putative bacteriophage terminase small subunit 0.00036 32-66 / 23-57
PF00292.17 'Paired box' domain 0.00039 28-67 / 21-60
PF05344.10 Domain of Unknown Function (DUF746) 0.0004 37-68 / 9-40
PF01710.15 Transposase 0.00051 30-66 / 8-44
PF09607.9 Brinker DNA-binding domain 0.0007 41-66 / 26-51
PF13518.5 Helix-turn-helix domain 0.00071 39-68 / 10-39
PF10668.8 Phage terminase small subunit 0.00085 40-69 / 22-51
PF04545.15 Sigma-70, region 4 0.00096 38-64 / 22-48
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.0012 39-67 / 18-46
PF08281.11 Sigma-70, region 4 0.0013 33-64 / 19-50
PF02001.15 Protein of unknown function DUF134 0.0013 21-68 / 29-75
PF06530.11 Phage antitermination protein Q 0.0013 28-69 / 67-108
PF06322.10 Phage NinH protein 0.0016 39-67 / 15-43
PF02796.14 Helix-turn-helix domain of resolvase 0.0018 38-62 / 19-43
PF13011.5 leucine-zipper of insertion element IS481 0.0018 37-68 / 21-52
PF13936.5 Helix-turn-helix domain 0.0019 37-62 / 17-42
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.0019 27-68 / 20-61
PF05225.15 helix-turn-helix, Psq domain 0.0025 38-64 / 14-41
PF16509.4 TrfB plasmid transcriptional repressor 0.0026 29-67 / 20-58
PF07374.10 Protein of unknown function (DUF1492) 0.0029 31-64 / 62-95
PF06627.10 Protein of unknown function (DUF1153) 0.0029 39-70 / 45-76
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.0031 38-63 / 25-49
PF11427.7 Tc3 transposase 0.0031 38-65 / 18-45
PF04936.11 Protein of unknown function (DUF658) 0.0032 40-65 / 14-39
PF14493.5 Helix-turn-helix domain 0.004 37-67 / 9-39
PF04218.12 CENP-B N-terminal DNA-binding domain 0.0041 41-66 / 24-49
PF04552.12 Sigma-54, DNA binding domain 0.0047 37-65 / 45-73
PF10654.8 Protein of unknown function (DUF2481) 0.0047 37-65 / 77-105
PF13556.5 PucR C-terminal helix-turn-helix domain 0.0051 39-68 / 11-40
PF10975.7 Protein of unknown function (DUF2802) 0.0056 29-61 / 32-64
PF11242.7 Protein of unknown function (DUF2774) 0.0064 37-68 / 11-42
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0063 23-64 / 88-131
PF02954.18 Bacterial regulatory protein, Fis family 0.0078 39-62 / 15-38
PF13412.5 Winged helix-turn-helix DNA-binding 0.0095 40-66 / 17-43

Annotations of the NCBI proteins of this PHROG


2:hypothetical protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0016987 sigma factor activity
GO:0060567 negative regulation of DNA-templated transcription, termination
GO:0019069 viral capsid assembly
GO:0006352 DNA-templated transcription, initiation
GO:0006355 regulation of transcription, DNA-templated
GO:0043565 sequence-specific DNA binding
GO:0006310 DNA recombination
GO:0003677 DNA binding
GO:0003700 DNA binding transcription factor activity
GO:0000150 recombinase activity
GO:0005524 ATP binding

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