phrog_2987 is made of 48 protein sequences and is annotated as "RNA polymerase beta subunit"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
495.73 656 487


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_016163_p275 YP_004934508.1 RNA-polymerase beta-subunit RpoC, N-terminus NC_016163 Yersinia phage phiR1-37 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
MF360957_p163 AST99985.1 RNA polymerase MF360957 Bacillus virus PBS1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
NC_031039_p269 YP_009283174.1 DNA-directed RNA polymerase beta' subunit NC_031039 Bacillus phage AR9 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
KT895374_p18 ALN97697.1 RNA-polymerase beta-subunit RpoC KT895374 Bacillus phage vB_BpuM-BpSp Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
MG655267_p224 AUG86011.1 putative DNA-directed RNA polymerase beta subunit MG655267 Erwinia phage vB_EamM_Bosolaphorus Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; unclassified Agricanvirus.
NC_027402_p23 YP_009153317.1 putative DNA-directed RNA polymerase beta subunit 1 NC_027402 Salmonella phage SPN3US Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Seoulvirus.
NC_017975_p136 YP_006383416.1 hypothetical protein NC_017975 Halocynthia phage JM-2012 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
MF285618_p313 ATA65648.1 RpoBC MF285618 Serratia phage 2050HW Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
KU886223_p227 ANH51687.1 putative RNA polymerase beta prime subunit KU886223 Erwinia phage vB_EamM_Simmy50 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; Erwinia virus Simmy50.
NC_031007_p25 YP_009278337.1 putative DNA-directed RNA polymerase beta subunit NC_031007 Erwinia phage vB_EamM_EarlPhillipIV Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Derbicusvirus; unclassified Derbicusvirus.
MF063068_p51 ARV77222.1 non-virion DNA-dependent RNA polymerase subunit beta' MF063068 Pseudomonas phage Noxifer Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Noxifervirus; Pseudomonas virus Noxifer.
KY499642_p209 AQT28150.1 putative DNA-directed RNA polymerase beta subunit KY499642 Vibrio phage pVa-21 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
MG655268_p223 AUG86330.1 putative DNA-directed RNA polymerase beta subunit MG655268 Erwinia phage vB_EamM_Desertfox Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; Erwinia virus Desertfox.
NC_016571_p58 YP_004957965.1 RNA polymerase beta' subunit NC_016571 Pseudomonas phage OBP Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
AP017972_p129 BAW98338.1 phage protein AP017972 Vibrio phage pTD1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tidunavirus; Vibrio virus pTD1.
KU886222_p225 ANJ65037.1 putative DNA-directed RNA polymerase beta subunit KU886222 Erwinia phage vB_EamM_Special G Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; Erwinia virus SpecialG.
MG655270_p227 AUG86976.1 putative DNA-directed RNA polymerase beta subunit MG655270 Erwinia phage vB_EamM_Mortimer Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; unclassified Agricanvirus.
KU886224_p222 ANH52003.1 putative DNA-directed RNA polymerase beta subunit KU886224 Erwinia phage vB_EamM_RAY Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; Erwinia virus RAY.
NC_031120_p26 YP_009292106.1 putative DNA-directed RNA polymerase beta subunit NC_031120 Erwinia phage vB_EamM_Caitlin Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Machinavirus; unclassified Machinavirus.
KX397370_p30 ANZ49677.1 putative DNA-directed RNA polymerase beta subunit KX397370 Erwinia phage vB_EamM_Machina Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Machinavirus; Erwinia virus Machina.
KC131130_p78 AGB07192.1 hypothetical protein KC131130 Vibrio phage VP4B Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tidunavirus; Vibrio virus VP4B.
MF459646_p29 ASU03641.1 putative RNA polymerase beta prime subunit MF459646 Erwinia phage vB_EamM_RisingSun Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Risingsunvirus; Erwinia virus Risingsun.
MG720308_p66 AUR80946.1 putative DNA helicase MG720308 Vibrio phage Aphrodite1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Aphroditevirus; Vibrio virus Aphrodite1.
NC_021531_p24 YP_008125764.1 putative DNA-directed RNA polymerase beta' subunit NC_021531 Cronobacter phage CR5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Derbicusvirus; unclassified Derbicusvirus.
NC_007623_p24 YP_418057.1 hypothetical protein NC_007623 Pseudomonas phage EL Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Elvirus.
MF459647_p29 ASU03886.1 putative RNA polymerase beta prime subunit MF459647 Erwinia phage vB_EamM_Joad Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Risingsunvirus; unclassified Risingsunvirus.
KU886225_p228 ANH52328.1 putative DNA-directed RNA polymerase beta subunit KU886225 Erwinia phage vB_EamM_Deimos-Minion Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; Erwinia virus Deimos.
MG655269_p225 AUG86653.1 putative DNA-directed RNA polymerase beta subunit MG655269 Erwinia phage vB_EamM_MadMel Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus; unclassified Agricanvirus.
AP017924_p287 BAW19261.1 putative DNA-directed RNA polymerase subunit beta AP017924 Ralstonia phage RP12 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ripduovirus; Ralstonia virus RP12.
NC_010821_p105 YP_001956831.1 hypothetical protein NC_010821 Pseudomonas phage 201phi2-1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phikzvirus; unclassified Phikzvirus.
NC_031127_p31 YP_009293008.1 putative DNA-directed RNA polymerase beta subunit NC_031127 Erwinia phage vB_EamM_Huxley Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Machinavirus; unclassified Machinavirus.
KX397371_p31 ANZ49950.1 putative DNA-directed RNA polymerase beta subunit KX397371 Erwinia phage vB_EamM_Parshik Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Machinavirus; unclassified Machinavirus.
MF042360_p84 ARV76715.1 putative DNA-directed RNA polymerase subunit beta MF042360 Pseudomonas phage Phabio Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phikzvirus; unclassified Phikzvirus.
NC_028999_p55 YP_009217137.1 hypothetical protein NC_028999 Pseudomonas phage PhiPA3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phikzvirus; unclassified Phikzvirus.
NC_031043_p25 YP_009283514.1 putative DNA-directed RNA polymerase beta subunit NC_031043 Erwinia phage vB_EamM_Phobos Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Derbicusvirus; unclassified Derbicusvirus.
NC_028950_p221 YP_009213070.1 hypothetical protein NC_028950 Ralstonia phage RSL2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Chiangmaivirus.
AP017925_p285 BAW19548.1 putative DNA-directed RNA polymerase subunit beta AP017925 Ralstonia phage RP31 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ripduovirus; unclassified Ripduovirus.
NC_023557_p223 YP_009005015.1 putative DNA-directed RNA polymerase beta subunit NC_023557 Erwinia phage Ea35-70 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Agricanvirus.
NC_028899_p227 YP_009208031.1 putative RNA polymerase beta prime subunit NC_028899 Ralstonia phage RSF1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Chiangmaivirus.
NC_031126_p28 YP_009292728.1 putative DNA-directed RNA polymerase beta subunit NC_031126 Erwinia phage vB_EamM_ChrisDB Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Machinavirus; unclassified Machinavirus.
NC_023610_p21 YP_009010074.1 RpoBC NC_023610 Erwinia phage PhiEaH1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Iapetusvirus; Erwinia virus EaH1.
NC_019929_p205 YP_007237855.1 putative PHAGE DNA-directed RNA polymerase beta subunit 3 NC_019929 Erwinia phage phiEaH2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Erskinevirus.
KX397373_p26 ANZ50463.1 putative DNA-directed RNA polymerase beta subunit KX397373 Erwinia phage vB_EamM_Stratton Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Erskinevirus; unclassified Erskinevirus.
NC_031010_p27 YP_009278640.1 putative DNA-directed RNA polymerase beta subunit NC_031010 Erwinia phage vB_EamM_Kwan Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
NC_031107_p28 YP_009290658.1 putative DNA-directed RNA polymerase beta subunit NC_031107 Erwinia phage vB_EamM_Asesino Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Erskinevirus.
NC_004629_p55 NP_803621.1 ORF055 NC_004629 Pseudomonas phage phiKZ Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phikzvirus.
KU521356_p74 ANM44832.1 putative non-virion DNA-dependent RNA polymerase subunit KU521356 Pseudomonas phage KTN4 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phikzvirus; Pseudomonas virus phiKZ.
MF805716_p303 ATN94880.1 hypothetical protein MF805716 Pseudomonas phage SL2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Phikzvirus; Pseudomonas virus SL2.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_3254 44 no annotation unknown function 25 9.61E-94 84.14
phrog_4795 28 nuclear shell protein DNA, RNA and nucleotide metabolism 24 3.94E-98 88.53
phrog_8316 13 no annotation unknown function 13 0 1000
phrog_4857 27 no annotation unknown function 9 8.86E-34 24.17
phrog_28260 2 no annotation unknown function 2 0 1000
phrog_34135 2 no annotation unknown function 2 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_11276 no annotation unknown function 98.4 1.9E-10 265-375 / 91-205
phrog_24972 no annotation unknown function 90.0 0.065 58-87 / 3-42
phrog_25354 no annotation unknown function 99.5 1.4E-18 46-464 / 44-484
phrog_2986 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 96.0 0.00016 26-459 / 23-519
phrog_34135 no annotation unknown function 97.8 4.1E-08 428-483 / 3-58
phrog_35368 no annotation unknown function 97.7 7.6E-08 437-484 / 2-49

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF04997.11 RNA polymerase Rpb1, domain 1 5.6E-34 45-336 / 2-337
PF00623.19 RNA polymerase Rpb1, domain 2 1E-25 338-490 / 1-175

Annotations of the NCBI proteins of this PHROG


19:DNA-directed RNA polymerase beta subunit 5:hypothetical protein 4:protein of an unannotated phage 4:RNA polymerase beta prime subunit 3:DNA-directed RNA polymerase subunit beta 2:RpoBC 2:DNA-directed RNA polymerase beta' subunit 1:DNA helicase 1:non-virion DNA-dependent RNA polymerase subunit 1:RNA polymerase 1:PHAGE DNA-directed RNA polymerase beta subunit 3 1:RNA-polymerase beta-subunit RpoC 1:RNA polymerase beta' subunit 1:RNA-polymerase beta-subunit RpoC, N-terminus 1:DNA-directed RNA polymerase beta subunit 1 1:non-virion DNA-dependent RNA polymerase subunit beta'

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
K13797 rpoBC : DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6] ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
64 1
K03006 RPB1, POLR2A : DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko05016 Huntington's disease
ko05168 Herpes simplex infection
ko05169 Epstein-Barr virus infection
63 3

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006351 transcription, DNA-templated
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0003677 DNA binding

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