phrog_3007 is made of 48 protein sequences and is annotated as "RusA-like Holliday junction resolvase"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
189.54 313 185


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p271487 no NCBI prot ID no annotation VI_10083 Gammaproteobacteria_gi_555271173 Viruses.
p379243 no NCBI prot ID no annotation VI_09949 Gammaproteobacteria_gi_554955617_2361_18669 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_013600_p7 YP_003344942.1 gp7 NC_013600 Sodalis phage SO1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus.
p174124 no NCBI prot ID no annotation VI_07649 Gammaproteobacteria_gi_418845847_0_38628 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_016566_p8 YP_004957444.1 DNA polymerase III beta subunit NC_016566 Shigella phage EP23 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus.
p22037 no NCBI prot ID no annotation VI_11839 Gammaproteobacteria_gi_553805856 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
NC_006953_p43 YP_224271.1 hypothetical protein NC_006953 Listonella phage phiHSIC Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_004333_p15 NP_705641.1 gp15 NC_004333 Burkholderia virus Bcep781 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Naesvirus.
NC_005342_p15 NP_958120.1 gp15 NC_005342 Burkholderia virus Bcep43 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Naesvirus.
p323752 no NCBI prot ID no annotation VI_05619 Betaproteobacteria_gi_484145824 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_005887_p31 YP_024951.1 putative DNA polymerase III protein NC_005887 Burkholderia virus BcepC6B Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Ryyoungvirus.
KJ545483_p57 AHN84867.1 hypothetical protein KJ545483 Vibrio phage phi 2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
NC_024369_p57 YP_009043883.1 DNA clamp protein NC_024369 Vibrio phage X29 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p381020 no NCBI prot ID no annotation VI_01862 Gammaproteobacteria_gi_301033810_210_16258 Viruses.
p212779 no NCBI prot ID no annotation VI_01782 Gammaproteobacteria_gi_545292138_0_35455 Viruses.
p249285 no NCBI prot ID no annotation VI_01404 Gammaproteobacteria_gi_545164357_0_31906 Viruses.
NC_025458_p43 YP_009103307.1 DNA polymerase III beta subunit NC_025458 Shewanella sp. phage 1/41 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p360924 no NCBI prot ID no annotation VI_11457 Gammaproteobacteria_gi_544916594 Viruses.
p153630 no NCBI prot ID no annotation VI_03303 Gammaproteobacteria_gi_556447892_1674402_1714894 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p29687 no NCBI prot ID no annotation VI_09972 Gammaproteobacteria_gi_555220240 Viruses.
p171128 no NCBI prot ID no annotation VI_10046 Gammaproteobacteria_gi_555254481_126000_164937 Viruses; unclassified bacterial viruses.
p300691 no NCBI prot ID no annotation VI_07589 Gammaproteobacteria_gi_378578251_30958_56779 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p163228 no NCBI prot ID no annotation VI_01409 Gammaproteobacteria_gi_545164943_0_39693 Viruses.
p349153 no NCBI prot ID no annotation VI_07224 Gammaproteobacteria_gi_417517153 Viruses.
p244556 no NCBI prot ID no annotation VI_07466 Gammaproteobacteria_gi_418256357 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p210576 no NCBI prot ID no annotation VI_01475 Gammaproteobacteria_gi_545174520_0_35769 Viruses.
p50949 no NCBI prot ID no annotation VI_07591 Gammaproteobacteria_gi_378579053_144688_201355 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p327084 no NCBI prot ID no annotation VI_07318 Gammaproteobacteria_gi_417743575 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
KF591601_p14 AGZ17805.1 putative beta-clamp protein KF591601 Enterobacteria phage IME_EC2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Murrayvirus; Escherichia virus EC2.
MF158038_p36 ATE85683.1 DNA polymerase MF158038 Shigella phage Sf11 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus Sfin1.
NC_031924_p47 YP_009322760.1 DNA polymerase III beta subunit NC_031924 Salmonella phage IME207 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_006953_p2 YP_224230.1 putative DNA polymerase III beta subunit NC_006953 Listonella phage phiHSIC Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_021534_p8 YP_008126172.1 hypothetical protein NC_021534 Vibrio phage pYD38-A Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Roufvirus; unclassified Roufvirus.
p151120 no NCBI prot ID no annotation VI_07712 Gammaproteobacteria_gi_402295640 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rauchvirus; Bordetella virus BPP1; Bordetella phage BIP-1.
MF614100_p17 ATI16411.1 hypothetical protein MF614100 Klebsiella phage vB_KpnS_IME279 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sortsnevirus; Klebsiella virus IME279.
NC_031918_p31 YP_009322228.1 DNA polymerase III beta subunit NC_031918 Salmonella phage 64795_sal3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_021563_p10 YP_008130294.1 putative beta-clamp protein NC_021563 Serratia phage Eta Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
KY860935_p37 ARK07769.1 DNA polymerase III beta subunit KY860935 Salmonella phage LPST10 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
MH023293_p8 AVP40194.1 hypothetical protein MH023293 Escherichia phage vB_EcoS-Sa179w3YLVW Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p223419 no NCBI prot ID no annotation VI_03133 Gammaproteobacteria_gi_553790695_610845_645347 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
KY742649_p35 AQZ54576.1 hypothetical protein KY742649 Proteus phage VB_PmiS-Isfahan Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gorganvirus; Proteus virus Isfahan.
KY316062_p41 APU00328.1 hypothetical protein KY316062 Ralstonia phage RS-PII-1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Okabevirinae; Sukuvirus; Ralstonia virus RSPII1.
p322236 no NCBI prot ID no annotation VI_09228 Gammaproteobacteria_gi_452735978 Viruses.
p305480 no NCBI prot ID no annotation VI_06339 Gammaproteobacteria_gi_32035066 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p142809 no NCBI prot ID no annotation VI_05553 Betaproteobacteria_gi_338760576_20718_62259 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_005091_p21 NP_918955.1 hypothetical protein NC_005091 Burkholderia phage BcepNazgul Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nazgulvirus; Burkholderia virus BcepNazgul.
NC_018283_p20 YP_006561104.1 DNA polymerase III B subunit NC_018283 Burkholderia phage AH2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ahduovirus; Burkholderia virus AH2.
p214336 no NCBI prot ID no annotation VI_02614 Gammaproteobacteria_gi_365922865_48885_84155 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_1001 148 no annotation unknown function 10 1.69E-29 19.89
phrog_1726 87 anti-repressor transcription regulation 10 3.71E-32 22.55
phrog_4439 31 no annotation unknown function 5 2.99E-19 9.65
phrog_34300 2 no annotation unknown function 2 0 1000
phrog_11981 8 no annotation unknown function 2 3.79E-11 1.54

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_12598 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 97.6 1.3E-07 7-182 / 15-210
phrog_27198 no annotation unknown function 99.2 1.3E-14 110-182 / 1-73
phrog_37414 no annotation unknown function 90.4 0.055 14-50 / 5-40
phrog_6615 DNA polymerase DNA, RNA and nucleotide metabolism 98.1 4.1E-09 6-133 / 6-97
phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 98.0 6.6E-09 7-142 / 136-271

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF02767.15 DNA polymerase III beta subunit, central domain 3.5E-11 28-132 / 13-119
PF00712.18 DNA polymerase III beta subunit, N-terminal domain 6.1E-10 18-134 / 2-121
PF04139.12 Rad9 0.0014 43-189 / 13-159

Annotations of the NCBI proteins of this PHROG


8:hypothetical protein 7:DNA polymerase III beta subunit 2:DNA Pol III b subunit fragment 2:beta-clamp protein 1:DNA polymerase III B subunit 1:DNA polymerase 1:DNA polymerase III protein 1:DNA clamp protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
K02338 DPO3B, dnaN : DNA polymerase III subunit beta [EC:2.7.7.7] ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko03430 Mismatch repair
ko03440 Homologous recombination
450 21

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0003887 DNA-directed DNA polymerase activity
GO:0000077 DNA damage checkpoint
GO:0003677 DNA binding
GO:0006260 DNA replication
GO:0008408 3'-5' exonuclease activity
GO:0030896 checkpoint clamp complex
GO:0009360 DNA polymerase III complex

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