phrog_3218 is made of 45 protein sequences and is annotated as "terminase small subunit"
Functional category: head and packaging


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
154.27 187 152


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p174882 no NCBI prot ID no annotation VI_05927 Clostridia_gi_544988983 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p78344 no NCBI prot ID no annotation VI_05916 Clostridia_gi_544983345 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p275122 no NCBI prot ID no annotation VI_05876 Clostridia_gi_544971024 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p98611 no NCBI prot ID no annotation VI_01211 Clostridia_gi_383843667 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p79647 no NCBI prot ID no annotation VI_05856 Clostridia_gi_544966436 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p121366 no NCBI prot ID no annotation VI_06051 Clostridia_gi_545023166 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p294942 no NCBI prot ID no annotation VI_05964 Clostridia_gi_544998353 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p168567 no NCBI prot ID no annotation VI_06139 Clostridia_gi_545049577 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p285975 no NCBI prot ID no annotation VI_06032 Clostridia_gi_545019896 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p158694 no NCBI prot ID no annotation VI_06065 Clostridia_gi_545030656 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p33740 no NCBI prot ID no annotation VI_06004 Clostridia_gi_545013896 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p59225 no NCBI prot ID no annotation VI_06054 Clostridia_gi_545024716_0_52375 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p198064 no NCBI prot ID no annotation VI_05766 Clostridia_gi_219684126 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p82449 no NCBI prot ID no annotation VI_05947 Clostridia_gi_544994029 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p224396 no NCBI prot ID no annotation VI_05985 Clostridia_gi_545002878 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p140327 no NCBI prot ID no annotation VI_05859 Clostridia_gi_544968212 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p74011 no NCBI prot ID no annotation VI_06106 Clostridia_gi_545040870 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p86673 no NCBI prot ID no annotation VI_05852 Clostridia_gi_544964438 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p367477 no NCBI prot ID no annotation VI_05760 Clostridia_gi_219723361 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p185737 no NCBI prot ID no annotation VI_06041 Clostridia_gi_545021272 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p78971 no NCBI prot ID no annotation VI_06166 Clostridia_gi_545053990 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p236989 no NCBI prot ID no annotation VI_01140 Clostridia_gi_423080687 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p79720 no NCBI prot ID no annotation VI_05909 Clostridia_gi_544981832 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p216820 no NCBI prot ID no annotation VI_01142 Clostridia_gi_423084762 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p170822 no NCBI prot ID no annotation VI_05974 Clostridia_gi_545000592 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p395627 no NCBI prot ID no annotation VI_05866 Clostridia_gi_544969431 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p433260 no NCBI prot ID no annotation VI_05966 Clostridia_gi_544998684 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p137248 no NCBI prot ID no annotation VI_06025 Clostridia_gi_545019023 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p56475 no NCBI prot ID no annotation VI_06098 Clostridia_gi_545038142 Viruses.
p130358 no NCBI prot ID no annotation VI_06169 Clostridia_gi_545054279 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p99082 no NCBI prot ID no annotation VI_05765 Clostridia_gi_219723494 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae; Clostridium phage phiMMP04.
p272749 no NCBI prot ID no annotation VI_05822 Clostridia_gi_484228627 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p331090 no NCBI prot ID no annotation VI_05920 Clostridia_gi_544984655_35557_57674 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p40825 no NCBI prot ID no annotation VI_06122 Clostridia_gi_545043797 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
KX905163_p73 ARB07116.1 hypothetical protein KX905163 Clostridioides phage phiSemix9P1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
p118709 no NCBI prot ID no annotation VI_06161 Clostridia_gi_545053493 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p289196 no NCBI prot ID no annotation VI_05885 Clostridia_gi_544974911 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p104224 no NCBI prot ID no annotation VI_05953 Clostridia_gi_544995855 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
p241296 no NCBI prot ID no annotation VI_06017 Clostridia_gi_545016948 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p149931 no NCBI prot ID no annotation VI_06088 Clostridia_gi_545036060 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
p94443 no NCBI prot ID no annotation VI_06062 Clostridia_gi_545030182 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
p61309 no NCBI prot ID no annotation VI_12371 Spirochaetia_gi_418747329 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p97263 no NCBI prot ID no annotation VI_12440 Spirochaetia_gi_523650070 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p21651 no NCBI prot ID no annotation VI_12352 Spirochaetia_gi_418714845 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p26090 no NCBI prot ID no annotation VI_12353 Spirochaetia_gi_418727951 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_38 1538 terminase large subunit head and packaging 42 4.95E-94 84.43
phrog_216 510 integrase integration and excision 41 6.40E-112 102.32
phrog_4715 28 ParB-like partition protein DNA, RNA and nucleotide metabolism 4 8.76E-16 6.18

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_10624 no annotation unknown function 91.3 0.037 13-58 / 6-51
phrog_11138 no annotation unknown function 91.0 0.042 16-55 / 89-129
phrog_12540 no annotation unknown function 91.2 0.039 19-107 / 14-121
phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 93.2 0.011 24-61 / 148-186
phrog_1381 plasmid antitoxin with HTH domain moron, auxiliary metabolic gene and host takeover 92.5 0.019 31-59 / 21-49
phrog_1482 terminase small subunit head and packaging 91.8 0.029 28-71 / 24-64
phrog_151 transposase integration and excision 95.9 0.00021 17-62 / 5-52
phrog_15534 HTH DNA binding protein DNA, RNA and nucleotide metabolism 91.2 0.039 32-57 / 38-63
phrog_1558 no annotation unknown function 93.2 0.011 21-56 / 104-140
phrog_1740 RNA polymerase sigma factor transcription regulation 94.2 0.0045 11-56 / 119-165
phrog_24579 terminase small subunit head and packaging 96.4 4.3E-05 17-71 / 12-69
phrog_2474 MerR-like transcriptional regulator transcription regulation 91.5 0.033 34-59 / 16-41
phrog_2538 terminase small subunit head and packaging 98.9 5.7E-13 17-125 / 2-105
phrog_26674 no annotation unknown function 90.8 0.046 13-54 / 168-209
phrog_268 no annotation unknown function 90.7 0.049 32-55 / 16-38
phrog_2727 no annotation unknown function 90.6 0.051 31-58 / 23-50
phrog_2907 excisionase integration and excision 91.1 0.041 34-79 / 6-56
phrog_309 terminase small subunit head and packaging 95.6 0.00046 27-56 / 18-47
phrog_323 transcriptional regulator, D5-like transcription regulation 92.6 0.017 15-64 / 46-95
phrog_3282 sigma factor transcription regulation 93.2 0.011 16-55 / 15-54
phrog_3512 sigma factor transcription regulation 90.6 0.051 18-54 / 66-103
phrog_351 RNA polymerase sigma factor transcription regulation 91.9 0.027 15-55 / 172-216
phrog_35 transcriptional repressor transcription regulation 92.6 0.018 33-56 / 13-36
phrog_36 transcriptional regulator transcription regulation 91.8 0.029 18-54 / 89-126
phrog_3 transcriptional repressor transcription regulation 95.6 0.00048 31-56 / 14-39
phrog_409 transcriptional regulator transcription regulation 96.1 0.00011 33-72 / 11-44
phrog_4102 terminase small subunit head and packaging 92.5 0.019 25-57 / 18-50
phrog_4151 DNA binding protein DNA, RNA and nucleotide metabolism 95.5 0.00052 26-58 / 13-45
phrog_4494 no annotation unknown function 93.8 0.0069 27-67 / 11-51
phrog_4646 transposase integration and excision 94.5 0.0031 15-54 / 3-43
phrog_4779 transcriptional regulator transcription regulation 96.1 0.00012 30-59 / 11-40
phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 95.0 0.0014 34-55 / 26-47
phrog_5751 terminase large subunit head and packaging 91.8 0.029 26-97 / 11-93
phrog_57 terminase small subunit head and packaging 92.0 0.026 33-93 / 2-58
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 97.5 2E-07 15-59 / 49-94
phrog_66 excisionase and transcriptional regulator integration and excision 96.9 5.4E-06 34-93 / 10-63
phrog_7061 HTH DNA binding protein DNA, RNA and nucleotide metabolism 94.7 0.0022 31-56 / 42-67
phrog_725 CII-like regulator transcription regulation 92.8 0.015 31-57 / 25-51
phrog_7344 terminase small subunit head and packaging 96.6 2E-05 12-55 / 4-48
phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 93.5 0.0089 30-65 / 15-50
phrog_7676 no annotation unknown function 91.0 0.043 23-56 / 5-39
phrog_7950 transcriptional repressor transcription regulation 92.0 0.026 19-56 / 9-45
phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 92.4 0.02 30-61 / 14-45
phrog_8 transcriptional regulator transcription regulation 95.2 0.001 32-56 / 13-36

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 2.1E-06 44-83 / 3-42
PF00292.17 'Paired box' domain 7.3E-06 41-82 / 20-61
PF08822.10 Protein of unknown function (DUF1804) 1E-05 42-84 / 6-49
PF13011.5 leucine-zipper of insertion element IS481 1.3E-05 44-83 / 13-53
PF07141.10 Putative bacteriophage terminase small subunit 2.1E-05 44-81 / 21-58
PF01710.15 Transposase 4E-05 43-81 / 7-45
PF12759.6 InsA C-terminal domain 4.4E-05 44-78 / 11-45
PF09607.9 Brinker DNA-binding domain 5.2E-05 43-81 / 10-52
PF10668.8 Phage terminase small subunit 6.3E-05 44-83 / 9-51
PF05344.10 Domain of Unknown Function (DUF746) 7.8E-05 51-82 / 9-40
PF13518.5 Helix-turn-helix domain 8.5E-05 45-83 / 3-40
PF07750.10 GcrA cell cycle regulator 0.0001 44-81 / 8-46
PF13551.5 Winged helix-turn helix 0.00011 47-83 / 4-40
PF06627.10 Protein of unknown function (DUF1153) 0.00011 42-85 / 33-77
PF04936.11 Protein of unknown function (DUF658) 0.00012 54-81 / 14-41
PF16087.4 Domain of unknown function (DUF4817) 0.00013 43-82 / 4-52
PF14493.5 Helix-turn-helix domain 0.00015 46-83 / 4-41
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00016 44-80 / 45-81
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.00025 44-78 / 17-50
PF06322.10 Phage NinH protein 0.00025 46-82 / 7-44
PF08765.10 Mor transcription activator family 0.00063 47-80 / 66-98
PF02796.14 Helix-turn-helix domain of resolvase 0.00064 50-77 / 17-44
PF01371.18 Trp repressor protein 0.00066 42-80 / 36-74
PF10654.8 Protein of unknown function (DUF2481) 0.00076 50-77 / 76-103
PF11112.7 Pyocin activator protein PrtN 0.00077 54-80 / 13-40
PF13936.5 Helix-turn-helix domain 0.00079 47-77 / 13-43
PF11427.7 Tc3 transposase 0.00081 49-80 / 15-46
PF17443.1 Uncharacterized protein pXO2-72 0.00086 53-79 / 7-33
PF01527.19 Transposase 0.00087 44-82 / 10-48
PF12964.6 Protein of unknown function (DUF3853) 0.00097 53-79 / 44-70
PF13309.5 HTH domain 0.001 44-76 / 25-63
PF13411.5 MerR HTH family regulatory protein 0.001 56-81 / 2-27
PF04552.12 Sigma-54, DNA binding domain 0.0011 51-80 / 45-74
PF06806.11 Putative excisionase (DUF1233) 0.0011 55-76 / 10-31
PF04218.12 CENP-B N-terminal DNA-binding domain 0.0011 47-79 / 15-48
PF16677.4 DNA-packaging protein gp3 0.0012 53-78 / 28-53
PF16509.4 TrfB plasmid transcriptional repressor 0.0012 51-80 / 28-57
PF02954.18 Bacterial regulatory protein, Fis family 0.0013 53-77 / 15-39
PF13412.5 Winged helix-turn-helix DNA-binding 0.0014 53-82 / 16-45
PF05225.15 helix-turn-helix, Psq domain 0.0017 53-79 / 15-42
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.0019 52-80 / 17-45
PF13384.5 Homeodomain-like domain 0.0019 46-78 / 9-41
PF11242.7 Protein of unknown function (DUF2774) 0.0023 47-81 / 7-41
PF09035.9 Excisionase from transposon Tn916 0.0026 53-77 / 14-38
PF07618.10 Protein of unknown function (DUF1580) 0.0026 59-78 / 7-26
PF10743.8 Regulatory phage protein cox 0.0027 53-81 / 10-38
PF08535.9 KorB domain 0.0027 53-82 / 2-31
PF01381.21 Helix-turn-helix 0.0028 52-77 / 7-32
PF15978.4 Tn7-like transposition protein D 0.0031 44-82 / 192-231
PF00376.22 MerR family regulatory protein 0.0035 57-78 / 2-23
PF07453.12 NUMOD1 domain 0.0037 55-75 / 20-40
PF10975.7 Protein of unknown function (DUF2802) 0.0037 41-76 / 30-65
PF13591.5 MerR HTH family regulatory protein 0.0039 55-79 / 1-25
PF07825.10 Excisionase-like protein 0.004 55-80 / 3-30
PF05331.10 Protein of unknown function (DUF742) 0.004 46-83 / 45-82
PF13556.5 PucR C-terminal helix-turn-helix domain 0.0041 53-81 / 11-39
PF12728.6 Helix-turn-helix domain 0.0045 55-79 / 2-27
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 0.0049 54-76 / 3-25
PF00356.20 Bacterial regulatory proteins, lacI family 0.0049 56-77 / 1-22
PF07638.10 ECF sigma factor 0.005 47-79 / 141-174
PF02042.14 RWP-RK domain 0.0056 53-80 / 11-38
PF13404.5 AsnC-type helix-turn-helix domain 0.0058 53-78 / 16-41
PF07278.10 Protein of unknown function (DUF1441) 0.0061 54-79 / 1-26
PF00126.26 Bacterial regulatory helix-turn-helix protein, lysR family 0.0061 52-81 / 9-38
PF00325.19 Bacterial regulatory proteins, crp family 0.0066 55-80 / 3-28
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0071 44-78 / 94-131

Annotations of the NCBI proteins of this PHROG


1:hypothetical protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0000150 recombinase activity
GO:0006313 transposition, DNA-mediated
GO:0005524 ATP binding
GO:0003700 DNA binding transcription factor activity
GO:0003677 DNA binding
GO:0006310 DNA recombination
GO:0004803 transposase activity
GO:0043565 sequence-specific DNA binding
GO:0006355 regulation of transcription, DNA-templated
GO:0005622 intracellular
GO:0019069 viral capsid assembly

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