phrog_3288 is made of 44 protein sequences and is annotated as "transcriptional regulator"
Functional category: transcription regulation


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
554.7 820 535


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p432374 no NCBI prot ID no annotation VI_03980 Halobacteria_gi_55376942_2136603_2147154 Viruses.
p335346 no NCBI prot ID no annotation VI_12263 Halobacteria_gi_448680304_178065_199729 Viruses.
p396564 no NCBI prot ID no annotation VI_12239 Halobacteria_gi_448424038_80920_95419 Viruses.
p355758 no NCBI prot ID no annotation VI_03997 Halobacteria_gi_564288321_2722282_2741295 Viruses.
p425329 no NCBI prot ID no annotation VI_03981 Halobacteria_gi_55376942_2036778_2048065 Viruses.
p441927 no NCBI prot ID no annotation VI_03978 Halobacteria_gi_385805044 Viruses.
p438728 no NCBI prot ID no annotation VI_12240 Halobacteria_gi_448427000_72_8721 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p406656 no NCBI prot ID no annotation VI_12264 Halobacteria_gi_448680304_261073_274437 Viruses.
p437374 no NCBI prot ID no annotation VI_12258 Halobacteria_gi_448626887_118246_127934 Viruses.
KX344510_p11 ANW09672.1 putative protein 11 KX344510 Haloarcula hispanica pleomorphic virus 3 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; unclassified Betapleolipovirus.
p355731 no NCBI prot ID no annotation VI_03990 Halobacteria_gi_344210305_2710849_2729862 Viruses.
p398674 no NCBI prot ID no annotation VI_12236 Halobacteria_gi_448406145_102907_117157 Viruses.
NC_017090_p14 YP_005454308.1 ORF14 NC_017090 Halogeometricum pleomorphic virus 1 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HGPV1.
p438664 no NCBI prot ID no annotation VI_03982 Halobacteria_gi_257051090_779501_788180 Viruses.
p434470 no NCBI prot ID no annotation VI_03989 Halobacteria_gi_433637028_2086207_2096493 Viruses.
p345514 no NCBI prot ID no annotation VI_12248 Halobacteria_gi_448502870_13516_33994 Viruses.
NC_017088_p9 YP_005454281.1 ORF9 NC_017088 Halorubrum pleomorphic virus 3 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HRPV3.
p322668 no NCBI prot ID no annotation VI_12266 Halobacteria_gi_448683719_248199_271311 Viruses.
p354204 no NCBI prot ID no annotation VI_12260 Halobacteria_gi_448664643_48834_68054 Viruses.
KY264020_p20 ARM71134.1 hypothetical protein KY264020 Haloarcula hispanica pleomorphic virus 4 (HHPV4) Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; unclassified Betapleolipovirus.
p159288 no NCBI prot ID no annotation VI_03983 Halobacteria_gi_257386085_423263_463260 Viruses.
p372305 no NCBI prot ID no annotation VI_03987 Halobacteria_gi_292654178_238920_256155 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HGPV1; Halogeometricum pleomorphic virus 1.
p438036 no NCBI prot ID no annotation VI_03988 Halobacteria_gi_397771790_655984_665141 Viruses.
CP003412_p19 AFO55975.1 hypothetical protein CP003412 Natrinema SNJ2 provirus Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae.
p305404 no NCBI prot ID no annotation VI_12251 Halobacteria_gi_448558771_8784_33975 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p417962 no NCBI prot ID no annotation VI_12214 Halobacteria_gi_448313326 Viruses.
p437069 no NCBI prot ID no annotation VI_12227 Halobacteria_gi_448359188_0_9993 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p305411 no NCBI prot ID no annotation VI_12250 Halobacteria_gi_448550861_23992_49182 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p305113 no NCBI prot ID no annotation VI_12249 Halobacteria_gi_448543799_10614_35830 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p406158 no NCBI prot ID no annotation VI_12209 Halobacteria_gi_448298087_53407_66823 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p316944 no NCBI prot ID no annotation VI_12231 Halobacteria_gi_448376649_179780_203485 Viruses.
p413338 no NCBI prot ID no annotation VI_03995 Halobacteria_gi_486396487_3990589_4003157 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p433028 no NCBI prot ID no annotation VI_12204 Halobacteria_gi_448281150_35255_45734 Viruses.
p365705 no NCBI prot ID no annotation VI_03985 Halobacteria_gi_289579696_268989_287077 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HRPV3; Halorubrum pleomorphic virus 3.
p351469 no NCBI prot ID no annotation VI_12216 Halobacteria_gi_448330764_14227_33803 Viruses.
p419662 no NCBI prot ID no annotation VI_03992 Halobacteria_gi_336252096_636851_648746 Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses.
p441746 no NCBI prot ID no annotation VI_12201 Halobacteria_gi_381414478 Viruses.
p409027 no NCBI prot ID no annotation VI_12229 Halobacteria_gi_448363921_81326_94371 Viruses.
p341860 no NCBI prot ID no annotation VI_03991 Halobacteria_gi_336252096_3610642_3631645 Viruses.
p362790 no NCBI prot ID no annotation VI_12234 Halobacteria_gi_448386223_0_18400 Viruses.
p438632 no NCBI prot ID no annotation VI_12212 Halobacteria_gi_448306972_9594_18301 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HRPV3; Halorubrum pleomorphic virus 3.
p354568 no NCBI prot ID no annotation VI_12220 Halobacteria_gi_448350073_138912_158077 Viruses.
p439132 no NCBI prot ID no annotation VI_12233 Halobacteria_gi_448385936_203139_211456 Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HRPV3; Halorubrum pleomorphic virus 3.
NC_009597_p4 YP_001294055.1 winged helix NC_009597 Pyrococcus abyssi virus 1 Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_9494 11 no annotation unknown function 11 0 1000
phrog_9008 12 no annotation unknown function 10 6.38E-45 35.32
phrog_23575 3 no annotation unknown function 3 0 1000
phrog_6362 19 no annotation unknown function 3 1.63E-13 3.91
phrog_25902 3 no annotation unknown function 3 0 1000
phrog_22415 3 no annotation unknown function 3 0 1000
phrog_26198 3 no annotation unknown function 3 0 1000
phrog_2450 60 no annotation unknown function 3 2.05E-11 1.81
phrog_7550 15 no annotation unknown function 3 5.74E-14 4.36
phrog_24778 3 no annotation unknown function 3 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_11420 DNA binding protein DNA, RNA and nucleotide metabolism 93.0 0.014 354-418 / 10-72
phrog_15150 transcriptional regulator transcription regulation 98.7 5.7E-12 74-419 / 110-459
phrog_2440 transcriptional regulator transcription regulation 91.9 0.028 348-402 / 1-59

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF10007.8 Uncharacterized protein conserved in archaea (DUF2250) 0.00047 368-435 / 6-90
PF11313.7 Protein of unknown function (DUF3116) 0.0016 373-438 / 10-82
PF07381.10 Winged helix DNA-binding domain (DUF1495) 0.0019 368-434 / 7-87
PF09114.9 Transcription factor MotA, activation domain 0.0019 367-440 / 13-83
PF14277.5 Domain of unknown function (DUF4364) 0.0019 373-439 / 3-74
PF03965.15 Penicillinase repressor 0.0027 369-431 / 2-70
PF14557.5 Putative AphA-like transcriptional regulator 0.0031 368-441 / 6-93
PF14947.5 Winged helix-turn-helix 0.0031 372-436 / 4-69
PF14394.5 Domain of unknown function (DUF4423) 0.0036 368-433 / 19-87
PF09824.8 ArsR transcriptional regulator 0.0046 361-416 / 10-61
PF02002.16 TFIIE alpha subunit 0.0051 371-438 / 13-84
PF13601.5 Winged helix DNA-binding domain 0.0052 373-436 / 3-70
PF05584.10 Sulfolobus plasmid regulatory protein 0.0057 368-417 / 4-52
PF01090.18 Ribosomal protein S19e 0.0066 373-439 / 54-136
PF03551.13 Transcriptional regulator PadR-like family 0.0061 385-434 / 14-71
PF04079.15 Segregation and condensation complex subunit ScpB 0.0067 367-435 / 80-149

Annotations of the NCBI proteins of this PHROG


5:hypothetical protein 1:winged helix

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0003677 DNA binding
GO:0045892 negative regulation of transcription, DNA-templated
GO:0003735 structural constituent of ribosome
GO:0006412 translation
GO:0005840 ribosome
GO:0051304 chromosome separation

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