phrog_3356 is made of 43 protein sequences and is annotated as "transposase"
Functional category: integration and excision


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
93.4 213 85


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_029104_p85 YP_009226395.1 hypothetical protein NC_029104 Brevibacillus phage Jimmer1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jimmervirus; unclassified Jimmervirus.
KT151958_p85 ALA48095.1 hypothetical protein KT151958 Brevibacillus phage Powder Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jimmervirus; Brevibacillus virus Osiris; Brevibacillus phage Osiris.
KC595514_p85 AGR47217.1 hypothetical protein KC595514 Brevibacillus phage Jimmer2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jimmervirus; Brevibacillus virus Jimmer.
NC_029029_p74 YP_009220131.1 hypothetical protein NC_029029 Brevibacillus phage Abouo Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Abouovirus.
NC_022980_p77 YP_008858712.1 hypothetical protein NC_022980 Brevibacillus phage Davies Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Abouovirus.
p61427 no NCBI prot ID no annotation VI_00905 Bacilli_gi_484002915_0_51593 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Abouovirus; Brevibacillus virus Davies; Brevibacillus phage Davies.
NC_028969_p85 YP_009215099.1 hypothetical protein NC_028969 Brevibacillus phage Osiris Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jimmervirus.
MG969427_p38 AVO22606.1 hypothetical protein MG969427 Anoxybacillus phage A403 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p53643 no NCBI prot ID no annotation VI_00422 Bacilli_gi_423490892 Viruses.
p148275 no NCBI prot ID no annotation VI_00827 Bacilli_gi_296500838_2496144_2537191 Viruses.
p12773 no NCBI prot ID no annotation VI_00425 Bacilli_gi_423502290 Viruses.
p55752 no NCBI prot ID no annotation VI_00713 Bacilli_gi_507065719 Viruses.
p95572 no NCBI prot ID no annotation VI_04403 Bacilli_gi_196037087_0_45570 Viruses.
p98340 no NCBI prot ID no annotation VI_00740 Bacilli_gi_402558574 Viruses.
p12672 no NCBI prot ID no annotation VI_00424 Bacilli_gi_423496617 Viruses.
p153167 no NCBI prot ID no annotation VI_00794 Bacilli_gi_218230750_2507426_2547955 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p53393 no NCBI prot ID no annotation VI_00737 Bacilli_gi_376270191 Viruses.
p52247 no NCBI prot ID no annotation VI_00714 Bacilli_gi_118445179 Viruses.
p56332 no NCBI prot ID no annotation VI_00413 Bacilli_gi_423410568 Viruses.
p193392 no NCBI prot ID no annotation VI_00879 Bacilli_gi_507027716 Viruses.
p36249 no NCBI prot ID no annotation VI_00427 Bacilli_gi_423532033 Viruses.
p16171 no NCBI prot ID no annotation VI_00865 Bacilli_gi_514961984 Viruses.
p61210 no NCBI prot ID no annotation VI_00415 Bacilli_gi_423416397 Viruses.
p31688 no NCBI prot ID no annotation VI_00417 Bacilli_gi_423427972 Viruses.
p74577 no NCBI prot ID no annotation VI_00703 Bacilli_gi_507048098 Viruses.
p20746 no NCBI prot ID no annotation VI_00466 Bacilli_gi_365164259 Viruses; unclassified bacterial viruses.
p54745 no NCBI prot ID no annotation VI_00409 Bacilli_gi_423388038 Viruses.
p122347 no NCBI prot ID no annotation VI_00412 Bacilli_gi_423405198 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p23754 no NCBI prot ID no annotation VI_00418 Bacilli_gi_423433709 Viruses.
p27641 no NCBI prot ID no annotation VI_00414 Bacilli_gi_423416314 Viruses.
p134 no NCBI prot ID no annotation VI_00430 Bacilli_gi_423560503 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cecivirus; Bacillus virus IEBH.
p18226 no NCBI prot ID no annotation VI_00421 Bacilli_gi_423480041 Viruses.
p59557 no NCBI prot ID no annotation VI_00410 Bacilli_gi_423399425 Viruses.
NC_031055_p43 YP_009285287.1 hypothetical protein NC_031055 Bacillus phage PfEFR-5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p133568 no NCBI prot ID no annotation VI_00979 Bacilli_gi_402558824_1373424_1415725 Viruses.
p124771 no NCBI prot ID no annotation VI_00795 Bacilli_gi_218895141_2470312_2513147 Viruses.
NC_028746_p68 YP_009193881.1 hypothetical protein NC_028746 Paenibacillus phage Harrison Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Harrisonvirus.
p429983 no NCBI prot ID no annotation VI_05366 Bacilli_gi_546316577 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_017978_p39 YP_006383543.1 gp39 NC_017978 Clostridium phage PhiS63 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p98503 no NCBI prot ID no annotation VI_01213 Clostridia_gi_546162569_1631445_1676706 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p314972 no NCBI prot ID no annotation VI_00554 Bacilli_gi_501528963 Viruses.
p397746 no NCBI prot ID no annotation VI_04435 Bacilli_gi_294619674 Viruses.
MF893271_p48 ATN94311.1 hypothetical protein MF893271 Lysinibacillus phage vB_LspM-01 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_2521 58 no annotation unknown function 23 8.91E-83 73.17
phrog_3407 42 no annotation unknown function 21 7.41E-79 69.25
phrog_843 171 Holliday junction resolvase DNA, RNA and nucleotide metabolism 7 6.84E-20 10.29
phrog_15349 6 no annotation unknown function 6 0 1000
phrog_4556 30 no annotation unknown function 5 3.51E-19 9.58

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_16311 no annotation unknown function 96.5 3.2E-05 27-64 / 1-38
phrog_31591 HTH DNA binding protein DNA, RNA and nucleotide metabolism 93.7 0.0074 30-71 / 4-45
phrog_323 transcriptional regulator, D5-like transcription regulation 94.0 0.0053 28-76 / 47-94

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF01710.15 Transposase 6.5E-05 8-85 / 24-96
PF04936.11 Protein of unknown function (DUF658) 1E-06 6-86 / 18-115
PF08822.10 Protein of unknown function (DUF1804) 5.1E-05 7-85 / 24-106
PF00292.17 'Paired box' domain 6.7E-05 7-81 / 38-125
PF07750.10 GcrA cell cycle regulator 0.0034 131-166 / 10-46
PF09607.9 Brinker DNA-binding domain 8.6E-06 42-86 / 4-52
PF12759.6 InsA C-terminal domain 1.2E-05 44-83 / 6-45
PF07141.10 Putative bacteriophage terminase small subunit 0.0081 132-163 / 24-55
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 3.4E-05 50-87 / 4-41
PF10668.8 Phage terminase small subunit 4.2E-05 42-87 / 3-50
PF13011.5 leucine-zipper of insertion element IS481 5.2E-05 42-87 / 6-52
PF06627.10 Protein of unknown function (DUF1153) 9.1E-05 40-88 / 26-75
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.00012 42-83 / 10-50
PF02796.14 Helix-turn-helix domain of resolvase 0.00015 48-82 / 10-44
PF05344.10 Domain of Unknown Function (DUF746) 0.00016 56-87 / 9-40
PF13936.5 Helix-turn-helix domain 0.00021 45-82 / 6-43
PF01527.19 Transposase 0.00021 43-84 / 4-46
PF11427.7 Tc3 transposase 0.00027 45-85 / 6-46
PF04218.12 CENP-B N-terminal DNA-binding domain 0.00027 44-84 / 7-48
PF16677.4 DNA-packaging protein gp3 0.00027 43-83 / 5-53
PF04552.12 Sigma-54, DNA binding domain 0.0003 41-85 / 28-74
PF16087.4 Domain of unknown function (DUF4817) 0.00031 47-87 / 3-52
PF10654.8 Protein of unknown function (DUF2481) 0.00031 44-83 / 65-104
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00037 44-85 / 40-81
PF13309.5 HTH domain 0.00039 43-81 / 19-63
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0004 41-83 / 86-131
PF15978.4 Tn7-like transposition protein D 0.00047 43-87 / 186-231
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.00049 58-85 / 18-45
PF13411.5 MerR HTH family regulatory protein 0.0015 7-70 / 5-68
PF14493.5 Helix-turn-helix domain 0.00054 52-87 / 5-40
PF13518.5 Helix-turn-helix domain 0.00055 52-87 / 5-39
PF05331.10 Protein of unknown function (DUF742) 0.00054 42-87 / 37-81
PF06322.10 Phage NinH protein 0.00059 58-86 / 15-43
PF08765.10 Mor transcription activator family 0.00078 52-85 / 66-98
PF13384.5 Homeodomain-like domain 0.0011 50-83 / 8-41
PF07638.10 ECF sigma factor 0.0012 44-84 / 134-174
PF05225.15 helix-turn-helix, Psq domain 0.0016 57-84 / 14-42
PF13412.5 Winged helix-turn-helix DNA-binding 0.0019 59-86 / 17-44
PF17443.1 Uncharacterized protein pXO2-72 0.0019 59-84 / 8-33
PF02954.18 Bacterial regulatory protein, Fis family 0.002 58-82 / 15-39
PF13551.5 Winged helix-turn helix 0.0022 56-87 / 8-39
PF01371.18 Trp repressor protein 0.0023 52-85 / 41-74
PF07900.10 Protein of unknown function (DUF1670) 0.0044 58-163 / 94-176
PF16509.4 TrfB plasmid transcriptional repressor 0.0032 48-85 / 20-57
PF07453.12 NUMOD1 domain 0.0032 60-80 / 20-40
PF10975.7 Protein of unknown function (DUF2802) 0.0032 45-80 / 29-64
PF08281.11 Sigma-70, region 4 0.0035 56-83 / 23-50
PF11242.7 Protein of unknown function (DUF2774) 0.0039 53-86 / 8-41
PF01381.21 Helix-turn-helix 0.0043 58-82 / 8-32
PF00376.22 MerR family regulatory protein 0.0043 62-83 / 2-23
PF11112.7 Pyocin activator protein PrtN 0.0044 59-84 / 13-39
PF04545.15 Sigma-70, region 4 0.0045 58-83 / 23-48
PF08535.9 KorB domain 0.0045 58-87 / 2-31
PF06806.11 Putative excisionase (DUF1233) 0.0046 60-81 / 10-31
PF06413.10 Neugrin 0.0045 41-82 / 8-52
PF13022.5 Helix-turn-helix of insertion element transposase 0.0049 60-81 / 26-47
PF00356.20 Bacterial regulatory proteins, lacI family 0.0051 61-83 / 1-23
PF13556.5 PucR C-terminal helix-turn-helix domain 0.0054 58-86 / 11-39
PF13404.5 AsnC-type helix-turn-helix domain 0.006 58-83 / 16-41
PF13591.5 MerR HTH family regulatory protein 0.0069 60-82 / 1-23
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 0.007 60-81 / 4-25
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.0082 44-84 / 18-58
PF07825.10 Excisionase-like protein 0.0082 60-85 / 3-30
PF02001.15 Protein of unknown function DUF134 0.0087 43-84 / 31-72
PF02042.14 RWP-RK domain 0.009 58-85 / 11-38

Annotations of the NCBI proteins of this PHROG


10:hypothetical protein 1:recombinase/transposase

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006310 DNA recombination
GO:0003677 DNA binding
GO:0004803 transposase activity
GO:0043565 sequence-specific DNA binding
GO:0006313 transposition, DNA-mediated
GO:0000150 recombinase activity
GO:0005524 ATP binding
GO:0003700 DNA binding transcription factor activity
GO:0019069 viral capsid assembly
GO:0016987 sigma factor activity
GO:0006355 regulation of transcription, DNA-templated
GO:0006352 DNA-templated transcription, initiation
GO:0005622 intracellular

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