phrog_34939 is made of 2 protein sequences and is annotated as "unknown function"
Functional category: unknown function


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
278 280 280


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p54066 no NCBI prot ID no annotation VI_01167 Clostridia_gi_313116237 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p346157 no NCBI prot ID no annotation VI_04054 unknown_gi_547812173 Viruses.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_351 353 RNA polymerase sigma factor transcription regulation 2 5.98E-11 1.34

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1124 transcriptional regulator transcription regulation 94.4 0.0033 14-132 / 11-139
phrog_1337 DNA binding protein DNA, RNA and nucleotide metabolism 96.4 4.5E-05 10-63 / 7-61
phrog_1373 transcriptional regulator transcription regulation 96.8 1.1E-05 11-71 / 33-92
phrog_1381 plasmid antitoxin with HTH domain moron, auxiliary metabolic gene and host takeover 97.5 2.9E-07 5-73 / 5-73
phrog_1468 transcriptional repressor transcription regulation 95.6 0.00049 18-65 / 16-61
phrog_151 transposase integration and excision 92.2 0.023 10-44 / 11-45
phrog_16278 HTH DNA binding protein DNA, RNA and nucleotide metabolism 96.6 2.4E-05 23-65 / 15-55
phrog_1702 transcriptional repressor transcription regulation 94.0 0.0054 11-69 / 15-75
phrog_1728 transcriptional regulator transcription regulation 91.9 0.028 12-66 / 6-59
phrog_2328 transcriptional repressor transcription regulation 97.0 4.7E-06 5-74 / 9-79
phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism 94.3 0.0038 10-67 / 25-82
phrog_2439 transcriptional regulator transcription regulation 97.3 7.1E-07 11-73 / 8-69
phrog_268 no annotation unknown function 92.7 0.016 15-48 / 9-42
phrog_2967 transcriptional regulator transcription regulation 97.2 1.5E-06 10-77 / 9-77
phrog_296 DNA transposition protein integration and excision 94.4 0.0033 11-47 / 3-39
phrog_3037 transcriptional repressor transcription regulation 93.4 0.0094 7-71 / 10-75
phrog_351 RNA polymerase sigma factor transcription regulation 90.2 0.06 10-52 / 178-224
phrog_36160 no annotation unknown function 91.0 0.042 9-52 / 10-53
phrog_3 transcriptional repressor transcription regulation 97.9 1.9E-08 11-67 / 5-60
phrog_409 transcriptional regulator transcription regulation 91.3 0.037 15-44 / 4-32
phrog_4583 transcriptional repressor transcription regulation 94.9 0.0016 17-72 / 18-72
phrog_4779 transcriptional regulator transcription regulation 95.7 0.00034 13-48 / 5-40
phrog_4 transcriptional repressor transcription regulation 96.4 4.1E-05 20-76 / 12-65
phrog_5736 transcriptional regulator transcription regulation 92.0 0.026 21-90 / 19-92
phrog_5823 transcriptional regulator transcription regulation 95.7 0.00041 9-76 / 4-71
phrog_6223 transcriptional repressor transcription regulation 96.4 5.3E-05 6-58 / 3-53
phrog_638 transcriptional regulator transcription regulation 94.8 0.0019 18-67 / 11-60
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 90.9 0.045 15-48 / 61-94
phrog_6831 transcriptional regulator transcription regulation 96.5 3.7E-05 11-63 / 5-57
phrog_7126 HTH DNA binding protein DNA, RNA and nucleotide metabolism 95.1 0.0013 22-68 / 29-75
phrog_7241 transcriptional regulator transcription regulation 95.0 0.0016 4-70 / 49-121
phrog_725 CII-like regulator transcription regulation 95.6 0.0005 12-45 / 15-50
phrog_7396 no annotation unknown function 93.8 0.0065 12-78 / 17-82
phrog_8 transcriptional regulator transcription regulation 98.6 3E-11 11-78 / 3-67
phrog_9103 transcriptional repressor transcription regulation 94.4 0.0034 14-65 / 11-62

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 5.5E-06 6-71 / 7-77
PF13744.5 Helix-turn-helix domain 1.1E-05 8-70 / 17-79
PF01381.21 Helix-turn-helix 1.1E-05 15-68 / 2-54
PF07022.12 Bacteriophage CI repressor helix-turn-helix domain 1.4E-05 13-72 / 2-60
PF05339.10 Protein of unknown function (DUF739) 1.4E-05 10-70 / 4-63
PF14590.5 Domain of unknown function (DUF4447) 1.5E-05 7-72 / 5-72
PF13443.5 Cro/C1-type HTH DNA-binding domain 2.2E-05 14-71 / 2-61
PF13413.5 Helix-turn-helix domain 2.4E-05 15-67 / 2-59
PF04645.11 Protein of unknown function, DUF603 3E-05 5-70 / 3-67
PF12844.6 Helix-turn-helix domain 2.8E-05 13-71 / 3-60
PF05269.10 Bacteriophage CII protein 6.1E-05 7-72 / 6-70
PF15731.4 Antitoxin component of bacterial toxin-antitoxin system, MqsA 7.9E-05 10-70 / 70-128
PF13560.5 Helix-turn-helix domain 8.4E-05 10-69 / 2-63
PF15943.4 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 0.00013 16-71 / 3-56
PF08667.9 BetR domain 0.00014 7-73 / 3-72
PF08965.9 Domain of unknown function (DUF1870) 0.0003 11-70 / 3-66
PF14549.5 DNA-binding transcriptional regulator Cro 0.00088 14-69 / 2-52
PF13693.5 Winged helix-turn-helix DNA-binding 0.0015 12-71 / 5-60
PF00157.16 Pou domain - N-terminal to homeobox domain 0.0023 7-63 / 5-64
PF04814.12 Hepatocyte nuclear factor 1 (HNF-1), N terminus 0.0038 9-62 / 113-165
PF12116.7 Stage III sporulation protein D 0.0037 20-65 / 17-62
PF02376.14 CUT domain 0.0037 7-71 / 5-67

Annotations of the NCBI proteins of this PHROG


no RefSeq proteins in this PHROG (only proteins from VirSorter contigs)

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006355 regulation of transcription, DNA-templated
GO:0005634 nucleus
GO:0045893 positive regulation of transcription, DNA-templated
GO:0003700 DNA binding transcription factor activity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0003677 DNA binding
GO:0043565 sequence-specific DNA binding

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