ID |
Definition |
Evalue |
posQ/posS |
PF14557.5 |
Putative AphA-like transcriptional regulator |
5.1E-09 |
5-87 / 4-95 |
PF03965.15 |
Penicillinase repressor |
7E-08 |
8-51 / 2-53 |
PF10007.8 |
Uncharacterized protein conserved in archaea (DUF2250) |
1.8E-07 |
6-79 / 5-90 |
PF07381.10 |
Winged helix DNA-binding domain (DUF1495) |
3.5E-07 |
6-78 / 6-87 |
PF04079.15 |
Segregation and condensation complex subunit ScpB |
4.1E-07 |
4-79 / 78-149 |
PF05584.10 |
Sulfolobus plasmid regulatory protein |
4.4E-07 |
5-51 / 2-48 |
PF02334.15 |
Replication terminator protein |
6.8E-07 |
13-85 / 22-106 |
PF14277.5 |
Domain of unknown function (DUF4364) |
1.1E-06 |
13-81 / 4-72 |
PF09114.9 |
Transcription factor MotA, activation domain |
1.7E-06 |
5-83 / 12-82 |
PF11313.7 |
Protein of unknown function (DUF3116) |
2.2E-06 |
13-81 / 11-81 |
PF13601.5 |
Winged helix DNA-binding domain |
3.2E-06 |
13-81 / 4-71 |
PF13463.5 |
Winged helix DNA-binding domain |
3.3E-06 |
8-51 / 2-47 |
PF02002.16 |
TFIIE alpha subunit |
3.3E-06 |
10-82 / 13-84 |
PF08535.9 |
KorB domain |
3.7E-06 |
22-51 / 2-33 |
PF03428.12 |
Replication protein C N-terminal domain |
4.1E-06 |
6-51 / 40-101 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
6.8E-06 |
20-84 / 15-77 |
PF05732.10 |
Firmicute plasmid replication protein (RepL) |
8.2E-06 |
6-51 / 51-105 |
PF01090.18 |
Ribosomal protein S19e |
9.7E-06 |
12-83 / 54-136 |
PF04492.12 |
Bacteriophage replication protein O |
9.8E-06 |
5-51 / 23-79 |
PF03551.13 |
Transcriptional regulator PadR-like family |
1.2E-05 |
22-78 / 13-71 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
1.2E-05 |
10-50 / 4-46 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
1.5E-05 |
11-51 / 9-53 |
PF14947.5 |
Winged helix-turn-helix |
1.9E-05 |
12-79 / 5-68 |
PF08221.10 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
2.1E-05 |
7-51 / 11-57 |
PF05331.10 |
Protein of unknown function (DUF742) |
2.3E-05 |
5-51 / 37-83 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
2.6E-05 |
4-46 / 4-46 |
PF16221.4 |
winged helix-turn-helix |
2.6E-05 |
10-51 / 32-76 |
PF01638.16 |
HxlR-like helix-turn-helix |
3.1E-05 |
13-78 / 9-73 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
3.5E-05 |
24-81 / 1-54 |
PF05158.11 |
RNA polymerase Rpc34 subunit |
4E-05 |
5-51 / 88-138 |
PF13011.5 |
leucine-zipper of insertion element IS481 |
6.1E-05 |
5-50 / 6-53 |
PF09202.10 |
Rio2, N-terminal |
6.4E-05 |
6-51 / 3-54 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
6.7E-05 |
7-46 / 3-42 |
PF07900.10 |
Protein of unknown function (DUF1670) |
7.4E-05 |
21-51 / 93-125 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
8E-05 |
11-46 / 5-40 |
PF12802.6 |
MarR family |
8.5E-05 |
7-51 / 3-51 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
9.9E-05 |
12-50 / 5-45 |
PF06163.10 |
Bacterial protein of unknown function (DUF977) |
0.00012 |
7-51 / 10-56 |
PF09607.9 |
Brinker DNA-binding domain |
0.00012 |
5-46 / 4-48 |
PF01047.21 |
MarR family |
0.00012 |
9-51 / 3-47 |
PF09012.9 |
FeoC like transcriptional regulator |
0.00015 |
18-51 / 9-44 |
PF01978.18 |
Sugar-specific transcriptional regulator TrmB |
0.00015 |
6-51 / 5-52 |
PF02295.16 |
Adenosine deaminase z-alpha domain |
0.00016 |
10-51 / 5-49 |
PF13309.5 |
HTH domain |
0.00016 |
24-45 / 42-63 |
PF02650.13 |
WhiA C-terminal HTH domain |
0.00018 |
6-46 / 37-79 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.00018 |
5-51 / 12-64 |
PF08822.10 |
Protein of unknown function (DUF1804) |
0.00021 |
7-46 / 3-42 |
PF16509.4 |
TrfB plasmid transcriptional repressor |
0.00021 |
6-51 / 15-60 |
PF04182.11 |
B-block binding subunit of TFIIIC |
0.00022 |
11-51 / 4-48 |
PF00292.17 |
'Paired box' domain |
0.00024 |
5-51 / 16-63 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
0.00024 |
20-45 / 13-38 |
PF03444.14 |
Winged helix-turn-helix transcription repressor, HrcA DNA-binding |
0.00025 |
8-51 / 3-54 |
PF06971.12 |
Putative DNA-binding protein N-terminus |
0.00026 |
13-45 / 15-49 |
PF12824.6 |
Mitochondrial ribosomal protein subunit L20 |
0.00026 |
5-46 / 87-130 |
PF07750.10 |
GcrA cell cycle regulator |
0.00027 |
7-46 / 3-42 |
PF07141.10 |
Putative bacteriophage terminase small subunit |
0.00028 |
12-46 / 21-54 |
PF12759.6 |
InsA C-terminal domain |
0.00032 |
6-46 / 5-44 |
PF08222.10 |
CodY helix-turn-helix domain |
0.00034 |
22-51 / 3-34 |
PF04552.12 |
Sigma-54, DNA binding domain |
0.00041 |
5-46 / 29-71 |
PF04936.11 |
Protein of unknown function (DUF658) |
0.00043 |
23-46 / 14-37 |
PF05043.12 |
Mga helix-turn-helix domain |
0.00045 |
12-46 / 19-53 |
PF09824.8 |
ArsR transcriptional regulator |
0.00045 |
9-51 / 17-58 |
PF04545.15 |
Sigma-70, region 4 |
0.00049 |
6-46 / 4-47 |
PF09904.8 |
Winged helix-turn helix |
0.0005 |
14-51 / 12-51 |
PF13542.5 |
Helix-turn-helix domain of transposase family ISL3 |
0.00052 |
6-46 / 11-49 |
PF06322.10 |
Phage NinH protein |
0.00053 |
20-46 / 13-39 |
PF03333.12 |
Adhesin biosynthesis transcription regulatory protein |
0.00054 |
7-46 / 40-78 |
PF10668.8 |
Phage terminase small subunit |
0.00058 |
5-46 / 3-45 |
PF13022.5 |
Helix-turn-helix of insertion element transposase |
0.00059 |
1-46 / 1-48 |
PF01381.21 |
Helix-turn-helix |
0.00065 |
20-46 / 6-32 |
PF10654.8 |
Protein of unknown function (DUF2481) |
0.00066 |
21-46 / 78-103 |
PF07638.10 |
ECF sigma factor |
0.00074 |
7-46 / 134-172 |
PF02796.14 |
Helix-turn-helix domain of resolvase |
0.00075 |
7-45 / 6-43 |
PF07106.12 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
0.00076 |
13-51 / 5-48 |
PF13936.5 |
Helix-turn-helix domain |
0.00081 |
6-45 / 4-42 |
PF05225.15 |
helix-turn-helix, Psq domain |
0.0009 |
21-46 / 14-40 |
PF07848.11 |
PaaX-like protein |
0.00099 |
22-51 / 19-53 |
PF05491.12 |
Holliday junction DNA helicase ruvB C-terminus |
0.001 |
5-51 / 4-56 |
PF05344.10 |
Domain of Unknown Function (DUF746) |
0.001 |
22-46 / 11-35 |
PF02082.19 |
Transcriptional regulator |
0.0011 |
24-51 / 25-54 |
PF11427.7 |
Tc3 transposase |
0.0012 |
6-46 / 4-43 |
PF09339.9 |
IclR helix-turn-helix domain |
0.0012 |
24-51 / 19-48 |
PF01710.15 |
Transposase |
0.0012 |
7-46 / 3-41 |
PF06627.10 |
Protein of unknown function (DUF1153) |
0.0013 |
8-46 / 31-69 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.0014 |
22-46 / 7-31 |
PF16677.4 |
DNA-packaging protein gp3 |
0.0014 |
22-47 / 28-53 |
PF08280.10 |
M protein trans-acting positive regulator (MGA) HTH domain |
0.0014 |
10-46 / 6-43 |
PF09182.9 |
Bacterial purine repressor, N-terminal |
0.0015 |
13-46 / 8-43 |
PF01527.19 |
Transposase |
0.0015 |
7-49 / 5-48 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
0.0015 |
22-46 / 12-36 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
0.0016 |
25-45 / 53-73 |
PF16365.4 |
Ethanolamine utilization protein EutK C-terminus |
0.0016 |
22-51 / 16-47 |
PF01316.20 |
Arginine repressor, DNA binding domain |
0.0016 |
9-51 / 5-51 |
PF07453.12 |
NUMOD1 domain |
0.0018 |
24-44 / 20-40 |
PF07506.10 |
RepB plasmid partitioning protein |
0.0018 |
6-46 / 4-44 |
PF10771.8 |
Winged helix-turn-helix domain (DUF2582) |
0.0019 |
6-51 / 5-52 |
PF06969.15 |
HemN C-terminal domain |
0.002 |
14-51 / 11-51 |
PF00356.20 |
Bacterial regulatory proteins, lacI family |
0.002 |
25-46 / 1-22 |
PF04703.11 |
FaeA-like protein |
0.0021 |
15-51 / 6-44 |
PF13413.5 |
Helix-turn-helix domain |
0.0022 |
21-46 / 7-32 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.0024 |
24-46 / 12-34 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.0026 |
24-46 / 3-25 |
PF08299.10 |
Bacterial dnaA protein helix-turn-helix |
0.0027 |
21-45 / 42-67 |
PF08281.11 |
Sigma-70, region 4 |
0.0028 |
6-46 / 10-49 |
PF02042.14 |
RWP-RK domain |
0.0029 |
20-46 / 9-35 |
PF16264.4 |
SatD family (SatD) |
0.0029 |
5-46 / 149-194 |
PF10078.8 |
Uncharacterized protein conserved in bacteria (DUF2316) |
0.0029 |
13-46 / 13-46 |
PF04967.11 |
HTH DNA binding domain |
0.0031 |
24-46 / 24-46 |
PF00376.22 |
MerR family regulatory protein |
0.0034 |
26-46 / 2-22 |
PF13411.5 |
MerR HTH family regulatory protein |
0.0034 |
25-46 / 2-23 |
PF11112.7 |
Pyocin activator protein PrtN |
0.0035 |
22-46 / 12-37 |
PF08765.10 |
Mor transcription activator family |
0.0037 |
23-46 / 72-95 |
PF11972.7 |
HTH DNA binding domain |
0.0038 |
18-51 / 8-40 |
PF16864.4 |
Dimerisation domain |
0.0038 |
12-51 / 21-62 |
PF06413.10 |
Neugrin |
0.0038 |
4-46 / 8-52 |
PF00392.20 |
Bacterial regulatory proteins, gntR family |
0.0041 |
21-51 / 21-54 |
PF08220.11 |
DeoR-like helix-turn-helix domain |
0.0043 |
20-51 / 11-44 |
PF12116.7 |
Stage III sporulation protein D |
0.0044 |
22-46 / 18-42 |
PF01325.18 |
Iron dependent repressor, N-terminal DNA binding domain |
0.0046 |
22-51 / 20-51 |
PF05930.11 |
Prophage CP4-57 regulatory protein (AlpA) |
0.0047 |
23-45 / 3-25 |
PF06806.11 |
Putative excisionase (DUF1233) |
0.0049 |
22-45 / 8-31 |
PF07278.10 |
Protein of unknown function (DUF1441) |
0.005 |
24-46 / 2-24 |
PF08279.11 |
HTH domain |
0.0053 |
22-46 / 14-38 |
PF08461.9 |
Ribonuclease R winged-helix domain |
0.0054 |
20-51 / 9-47 |
PF13591.5 |
MerR HTH family regulatory protein |
0.0057 |
24-51 / 1-26 |
PF15977.4 |
Winged helix-turn-helix DNA binding |
0.0058 |
23-51 / 23-53 |
PF15978.4 |
Tn7-like transposition protein D |
0.0058 |
15-46 / 195-226 |
PF13518.5 |
Helix-turn-helix domain |
0.0063 |
22-51 / 10-41 |
PF04297.13 |
Putative helix-turn-helix protein, YlxM / p13 like |
0.0067 |
6-46 / 17-56 |
PF10743.8 |
Regulatory phage protein cox |
0.0072 |
22-46 / 10-34 |
PF03297.14 |
S25 ribosomal protein |
0.0073 |
20-51 / 53-86 |
PF13556.5 |
PucR C-terminal helix-turn-helix domain |
0.0081 |
22-46 / 11-35 |
PF13443.5 |
Cro/C1-type HTH DNA-binding domain |
0.0082 |
22-46 / 9-34 |
PF07825.10 |
Excisionase-like protein |
0.0086 |
24-46 / 3-27 |
PF09035.9 |
Excisionase from transposon Tn916 |
0.0087 |
22-46 / 14-38 |