phrog_4291 is made of 32 protein sequences and is annotated as "RNA-dependent RNA polymerase"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
925.91 1183 908


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p46481 no NCBI prot ID no annotation VI_01201 Clostridia_gi_365137247_641329_700297 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
MF140423_p91 ASM62363.1 HTH DNA binding domain protein MF140423 Arthrobacter phage Nightmare Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordonvirus; unclassified Gordonvirus.
p46225 no NCBI prot ID no annotation VI_01226 Clostridia_gi_547240599 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
KU160642_p98 ALY08779.1 HTH DNA binding domain protein KU160642 Arthrobacter phage Circum Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus; Arthrobacter virus Circum.
MF189170_p96 ASR80058.1 HTH DNA binding domain protein MF189170 Arthrobacter phage Arcadia Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus; unclassified Mudcatvirus.
KU160646_p88 ALY09063.1 DNA-binding domain protein KU160646 Arthrobacter phage Gordon Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordonvirus; Arthrobacter virus Gordon.
NC_031224_p94 YP_009300783.1 HTH DNA binding domain protein NC_031224 Arthrobacter phage Mudcat Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus.
p38917 no NCBI prot ID no annotation VI_01187 Clostridia_gi_355689648_74587_135725 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
MG757154_p86 AVD99508.1 hypothetical protein MG757154 Streptomyces phage Bing Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bingvirus; Streptomyces virus Bing.
MF038790_p92 ASD52307.1 helix-turn-helix DNA binding domain protein MF038790 Arthrobacter phage Niktson Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordonvirus; unclassified Gordonvirus.
NC_024215_p77 YP_009036902.1 hypothetical protein NC_024215 Lactococcus phage P078 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
KU160641_p87 ALY08687.1 hypothetical protein KU160641 Arthrobacter phage CaptnMurica Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordonvirus; Arthrobacter virus Captnmurica.
MF189171_p95 ASR80152.1 HTH DNA binding domain protein MF189171 Arthrobacter phage Correa Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus; unclassified Mudcatvirus.
MG711463_p55 AUV56548.1 putative RNA polymerase MG711463 Faecalibacterium phage FP_oengus Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Oengusvirus; Faecalibacterium virus Oengus.
NC_023735_p106 YP_009017720.1 gp106 NC_023735 Rhodococcus phage ReqiPepy6 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pepyhexavirus.
NC_024214_p81 YP_009036824.1 hypothetical protein NC_024214 Lactococcus phage P162 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_023694_p106 YP_009012687.1 structural protein NC_023694 Rhodococcus phage ReqiPoco6 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pepyhexavirus.
MF467949_p84 ASU04079.1 HTH DNA binding domain protein MF467949 Streptomyces phage Spectropatronm Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Rimavirus; unclassified Rimavirus.
MG962369_p92 AVO25424.1 helix-turn-helix DNA binding domain protein MG962369 Gordonia phage Kerry Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
MF467948_p81 ASU03993.1 HTH DNA binding domain protein MF467948 Streptomyces phage DrGrey Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Rimavirus; Strepomyces virus Drgrey.
MF189175_p101 ASR80551.1 HTH DNA binding domain protein MF189175 Arthrobacter phage Tribby Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus; unclassified Mudcatvirus.
MF324906_p100 ASR84679.1 HTH DNA binding domain protein MF324906 Arthrobacter phage Cheesy Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus; unclassified Mudcatvirus.
MF975637_p55 ATN93704.1 helix-turn-helix DNA binding domain protein MF975637 Streptomyces phage Scap1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Scapunavirus; Streptomyces virus Scap1.
p18818 no NCBI prot ID no annotation VI_01149 Clostridia_gi_324035751_41009_118330 Viruses.
MF140432_p87 ASR84080.1 HTH DNA binding domain protein MF140432 Arthrobacter phage Teacup Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordonvirus; unclassified Gordonvirus.
NC_024203_p75 YP_009035136.1 hypothetical protein NC_024203 Lactococcus phage P092 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
KX670789_p87 AOZ64951.1 HTH DNA binding domain protein KX670789 Streptomyces phage OlympicHelado Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Rimavirus; unclassified Rimavirus.
KX670790_p86 AOZ65038.1 HTH DNA binding domain protein KX670790 Streptomyces phage Rima Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Rimavirus; Strepomyces virus Rima.
MF140401_p85 ASR83371.1 HTH DNA binding domain protein MF140401 Arthrobacter phage Caterpillar Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gordonvirus; unclassified Gordonvirus.
MF189173_p99 ASR80353.1 HTH DNA binding domain protein MF189173 Arthrobacter phage Heisenberger Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mudcatvirus; unclassified Mudcatvirus.
NC_024208_p79 YP_009035894.1 hypothetical protein NC_024208 Lactococcus phage P118 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_010576_p75 YP_001828723.1 structural protein NC_010576 Lactococcus phage 1706 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_4303 32 no annotation unknown function 32 0 1000
phrog_3953 36 exonuclease DNA, RNA and nucleotide metabolism 27 1.97E-112 102.83
phrog_1794 84 amidase lysis 4 4.76E-14 4.44

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1337 DNA binding protein DNA, RNA and nucleotide metabolism 90.7 0.049 877-907 / 13-43
phrog_1373 transcriptional regulator transcription regulation 90.3 0.057 879-907 / 40-68
phrog_20467 HNH endonuclease DNA, RNA and nucleotide metabolism 93.4 0.0098 858-905 / 45-92
phrog_309 terminase small subunit head and packaging 91.8 0.028 872-905 / 13-46
phrog_323 endonuclease DNA, RNA and nucleotide metabolism 94.3 0.0041 49-113 / 15-85
phrog_3855 HTH DNA binding protein DNA, RNA and nucleotide metabolism 92.4 0.02 829-906 / 19-102
phrog_3 transcriptional repressor transcription regulation 90.9 0.045 881-906 / 14-39
phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism 92.9 0.014 865-906 / 61-102
phrog_6223 transcriptional repressor transcription regulation 92.8 0.015 882-906 / 16-40
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 95.3 0.00093 865-907 / 50-92
phrog_6831 transcriptional regulator transcription regulation 94.3 0.0037 873-906 / 5-38
phrog_7067 terminase small subunit head and packaging 90.8 0.046 875-906 / 23-54
phrog_8308 no annotation unknown function 96.4 4.7E-05 446-527 / 474-552
phrog_9366 transposase integration and excision 94.4 0.0034 82-116 / 71-105

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF05183.11 RNA dependent RNA polymerase 1.7E-29 412-628 / 302-555
PF01710.15 Transposase 0.0018 45-130 / 2-96
PF04936.11 Protein of unknown function (DUF658) 0.0025 61-131 / 14-115
PF08822.10 Protein of unknown function (DUF1804) 0.0063 46-130 / 3-106
PF00292.17 'Paired box' domain 0.0067 45-86 / 17-58

Annotations of the NCBI proteins of this PHROG


14:HTH DNA binding domain protein 5:hypothetical protein 3:helix-turn-helix DNA binding domain protein 2:structural protein 2:protein of an unannotated phage 1:DNA-binding domain protein 1:RNA polymerase

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006355 regulation of transcription, DNA-templated
GO:0003677 DNA binding
GO:0003968 RNA-directed 5'-3' RNA polymerase activity

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