phrog_4629 is made of 29 protein sequences and is annotated as "HTH DNA binding domain protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
84.48 99 87


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
MG099950_p78 ATW59955.1 HTH DNA binding protein MG099950 Arthrobacter phage Waltz Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Laroyevirus; unclassified Laroyevirus.
MF140427_p79 ASR83958.1 HTH DNA binding domain protein MF140427 Arthrobacter phage Shrooms Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Laroyevirus; unclassified Laroyevirus.
MF140434_p77 ASR84165.1 HTH DNA binding domain protein MF140434 Arthrobacter phage Wheelbite Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Laroyevirus; unclassified Laroyevirus.
KU160654_p81 ALY09606.1 HTH DNA binding domain protein KU160654 Arthrobacter phage Laroye Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Laroyevirus; Arthrobacter virus Laroye.
KU160664_p81 ALY10247.1 HTH DNA binding domain protein KU160664 Arthrobacter phage Salgado Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Laroyevirus; unclassified Laroyevirus.
MF140418_p78 ASR83662.1 HTH DNA binding domain protein MF140418 Arthrobacter phage LiSara Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Laroyevirus; unclassified Laroyevirus.
KX688102_p54 AOZ65090.1 HTH DNA binding domain protein KX688102 Arthrobacter phage Oxynfrius Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
MF140404_p52 ASR83435.1 HTH DNA binding domain protein MF140404 Arthrobacter phage Christian Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
MG198781_p54 ATW58925.1 HTH DNA binding domain protein MG198781 Arthrobacter phage Fluke Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
MG198779_p52 ATW58766.1 helix-turn-helix DNA binding domain protein MG198779 Arthrobacter phage Urla Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
MF140424_p54 ASR83787.1 HTH DNA binding domain protein MF140424 Arthrobacter phage Nubia Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160672_p54 ALY10779.1 helix-turn-helix DNA binding domain protein KU160672 Arthrobacter phage Wayne Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Wayne.
KX576641_p51 AOQ28325.1 helix-turn-helix DNA binding domain protein KX576641 Arthrobacter phage Lucy Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KX576640_p54 AOQ28266.1 helix-turn-helix DNA binding domain protein KX576640 Arthrobacter phage RcigaStruga Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160662_p55 ALY10074.1 HTH DNA binding domain protein KU160662 Arthrobacter phage RAP15 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160643_p50 ALY08836.1 HTH DNA binding domain protein KU160643 Arthrobacter phage DrRobert Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus DrRobert.
KU160640_p51 ALY08588.1 HTH DNA binding domain protein KU160640 Arthrobacter phage Bennie Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Bennie.
KX621004_p53 AOT24081.1 helix-turn-helix DNA binding domain protein KX621004 Arthrobacter phage Suppi Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160659_p53 ALY09834.1 HTH DNA binding domain protein KU160659 Arthrobacter phage Preamble Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Preamble.
KX688103_p55 AOZ65153.1 HTH DNA binding domain protein KX688103 Arthrobacter phage Greenhouse Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
MF668285_p51 ASZ74365.1 helix-turn-helix DNA binding domain protein MF668285 Arthrobacter phage Temper16 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160652_p55 ALY09458.1 HTH DNA binding domain protein KU160652 Arthrobacter phage Joann Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Joann.
MF140425_p52 ASR83845.1 HTH DNA binding domain protein MF140425 Arthrobacter phage PitaDog Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160645_p55 ALY08966.1 HTH DNA binding domain protein KU160645 Arthrobacter phage Glenn Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Glenn.
KX621005_p54 AOT24144.1 helix-turn-helix DNA binding domain protein KX621005 Arthrobacter phage Vallejo Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160649_p53 ALY09263.1 HTH DNA binding domain protein KU160649 Arthrobacter phage Immaculata Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.
KU160661_p51 ALY10009.1 HTH DNA binding domain protein KU160661 Arthrobacter phage Pumancara Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Pumancara.
KU160653_p52 ALY09519.1 helix-turn-helix DNA binding domain protein KU160653 Arthrobacter phage Korra Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; Arthrobacter virus Korra.
MF140407_p54 ASR83499.1 HTH DNA binding domain protein MF140407 Arthrobacter phage Dino Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Korravirus; unclassified Korravirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_5390 24 no annotation unknown function 23 9.46E-106 96.15
phrog_5720 22 no annotation unknown function 21 1.01E-96 87.12
phrog_1512 99 endolysin lysis 5 2.40E-17 7.74

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_12251 no annotation unknown function 91.3 0.037 33-72 / 175-214
phrog_16553 transcriptional repressor transcription regulation 91.5 0.033 46-70 / 16-40
phrog_323 transcriptional regulator, D5-like transcription regulation 91.4 0.035 34-75 / 47-87
phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism 93.5 0.0085 34-72 / 61-99
phrog_6156 endonuclease DNA, RNA and nucleotide metabolism 96.5 2.8E-05 27-73 / 7-55
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 91.2 0.04 35-70 / 51-86

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF08822.10 Protein of unknown function (DUF1804) 0.00055 46-83 / 5-43
PF04936.11 Protein of unknown function (DUF658) 0.0037 59-84 / 14-39
PF00292.17 'Paired box' domain 0.00056 44-84 / 18-58
PF07638.10 ECF sigma factor 2E-05 44-90 / 134-180
PF13565.5 Homeodomain-like domain 4.2E-05 13-25 / 1-14
PF12759.6 InsA C-terminal domain 7E-05 50-82 / 12-44
PF01710.15 Transposase 0.0005 47-83 / 6-42
PF07750.10 GcrA cell cycle regulator 8E-05 45-86 / 4-46
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00012 44-88 / 40-84
PF16087.4 Domain of unknown function (DUF4817) 0.00013 6-25 / 33-52
PF05331.10 Protein of unknown function (DUF742) 0.00013 42-85 / 37-79
PF09607.9 Brinker DNA-binding domain 0.00024 45-84 / 7-50
PF07141.10 Putative bacteriophage terminase small subunit 0.00028 49-84 / 21-56
PF02796.14 Helix-turn-helix domain of resolvase 0.0003 56-81 / 18-43
PF06530.11 Phage antitermination protein Q 0.00047 46-90 / 66-110
PF13011.5 leucine-zipper of insertion element IS481 0.0023 57-85 / 22-50
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 0.00063 55-85 / 9-39
PF04218.12 CENP-B N-terminal DNA-binding domain 0.00068 60-84 / 24-48
PF13936.5 Helix-turn-helix domain 0.00068 55-81 / 16-42
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.00076 58-87 / 18-47
PF07900.10 Protein of unknown function (DUF1670) 0.0011 8-84 / 106-177
PF04545.15 Sigma-70, region 4 0.0012 58-84 / 23-49
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.0014 45-87 / 19-61
PF16677.4 DNA-packaging protein gp3 0.0014 58-83 / 28-53
PF07374.10 Protein of unknown function (DUF1492) 0.0016 46-83 / 58-95
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0015 41-83 / 86-131
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.0017 52-82 / 20-49
PF05344.10 Domain of Unknown Function (DUF746) 0.0017 57-85 / 10-38
PF04552.12 Sigma-54, DNA binding domain 0.0055 56-84 / 45-73
PF11427.7 Tc3 transposase 0.0019 57-83 / 18-44
PF10654.8 Protein of unknown function (DUF2481) 0.0019 54-85 / 75-106
PF16509.4 TrfB plasmid transcriptional repressor 0.002 50-85 / 22-57
PF02001.15 Protein of unknown function DUF134 0.002 44-90 / 32-78
PF10668.8 Phage terminase small subunit 0.002 59-85 / 22-48
PF08281.11 Sigma-70, region 4 0.0021 56-83 / 23-50
PF16264.4 SatD family (SatD) 0.0026 58-90 / 170-202
PF13551.5 Winged helix-turn helix 0.0035 9-29 / 23-43
PF08765.10 Mor transcription activator family 0.0037 58-86 / 71-99
PF06322.10 Phage NinH protein 0.0039 58-85 / 15-42
PF13309.5 HTH domain 0.0056 60-80 / 42-62
PF06627.10 Protein of unknown function (DUF1153) 0.0057 9-30 / 58-79
PF10975.7 Protein of unknown function (DUF2802) 0.0066 49-80 / 33-64
PF13384.5 Homeodomain-like domain 0.0079 57-83 / 15-41
PF01527.19 Transposase 0.0083 57-84 / 19-46
PF05225.15 helix-turn-helix, Psq domain 0.0094 58-82 / 15-40
PF13518.5 Helix-turn-helix domain 0.0095 58-85 / 10-37

Annotations of the NCBI proteins of this PHROG


20:HTH DNA binding domain protein 8:helix-turn-helix DNA binding domain protein 1:HTH DNA binding protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0005524 ATP binding
GO:0000150 recombinase activity
GO:0006313 transposition, DNA-mediated
GO:0003700 DNA binding transcription factor activity
GO:0006310 DNA recombination
GO:0003677 DNA binding
GO:0004803 transposase activity
GO:0006355 regulation of transcription, DNA-templated
GO:0006352 DNA-templated transcription, initiation
GO:0019069 viral capsid assembly
GO:0060567 negative regulation of DNA-templated transcription, termination
GO:0016987 sigma factor activity

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