phrog_5767 is made of 22 protein sequences and is annotated as "sigma factor"
Functional category: transcription regulation


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
432.95 692 395


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p34210 no NCBI prot ID no annotation VI_05887 Clostridia_gi_544974967 Viruses.
p31074 no NCBI prot ID no annotation VI_05860 Clostridia_gi_544968278 Viruses.
p31886 no NCBI prot ID no annotation VI_05913 Clostridia_gi_544983269 Viruses.
CP011970_p178 AKP44852.1 hypothetical protein CP011970 Peptoclostridium phage phiCDIF1296T Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
NC_029048_p7 YP_009221782.1 Response regulator NC_029048 Clostridium phage phiCD211 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p322696 no NCBI prot ID no annotation VI_05907 Clostridia_gi_544981648 Viruses.
MF547663_p166 AUO78556.1 luxR family regulatory protein MF547663 Clostridioides phage LIBA2945 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p343670 no NCBI prot ID no annotation VI_01308 Clostridia_gi_485075893 Viruses.
MF547662_p166 AUO78384.1 luxR family regulatory protein MF547662 Clostridioides phage LIBA6276 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p68095 no NCBI prot ID no annotation VI_05269 Bacilli_gi_501033790 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p37820 no NCBI prot ID no annotation VI_04875 Bacilli_gi_420233465 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_029119_p29 YP_009226705.1 hypothetical protein NC_029119 Staphylococcus phage SPbeta-like Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
NC_029073_p4 YP_009223711.1 major head-like protein NC_029073 Geobacillus virus E3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p125560 no NCBI prot ID no annotation VI_05266 Bacilli_gi_501059894 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p45546 no NCBI prot ID no annotation VI_05038 Bacilli_gi_481024571 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
p12783 no NCBI prot ID no annotation VI_00893 Bacilli_gi_323650955 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p13847 no NCBI prot ID no annotation VI_00993 Bacilli_gi_526444490 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
NC_024355_p126 YP_009042632.1 hypothetical protein NC_024355 Staphylococcus phage 6ec Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sextaecvirus.
NC_023582_p103 YP_009007766.1 response regulator NC_023582 Staphylococcus phage vB_SepS_SEP9 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sextaecvirus.
NC_028749_p13 YP_009194063.1 luxR family protein NC_028749 Brevibacillus phage Sundance Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
MF001358_p118 ASZ76784.1 hypothetical protein MF001358 Enterococcus phage EF1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
MF001361_p32 ASZ77407.1 hypothetical protein MF001361 Enterococcus phage EF5 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_379 331 DNA binding protein DNA, RNA and nucleotide metabolism 15 5.63E-46 36.37
phrog_14801 6 no annotation unknown function 6 0 1000
phrog_30116 2 no annotation unknown function 2 0 1000
phrog_28443 2 no annotation unknown function 2 0 1000
phrog_29925 2 no annotation unknown function 2 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1190 RNA polymerase sigma factor transcription regulation 90.2 0.059 277-339 / 125-186
phrog_1373 transcriptional regulator transcription regulation 92.2 0.023 302-328 / 40-66
phrog_14233 no annotation unknown function 94.8 0.0019 6-92 / 3-92
phrog_1740 RNA polymerase sigma factor transcription regulation 93.2 0.011 280-341 / 117-177
phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism 92.4 0.021 304-331 / 35-63
phrog_24049 no annotation unknown function 93.6 0.0078 290-350 / 15-74
phrog_3512 sigma factor transcription regulation 96.8 1.2E-05 269-341 / 41-117
phrog_351 RNA polymerase sigma factor transcription regulation 95.6 0.00047 275-341 / 161-229
phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism 91.0 0.042 288-330 / 60-103
phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 95.7 0.00033 354-387 / 2-41
phrog_6831 transcriptional regulator transcription regulation 94.5 0.003 294-340 / 3-58

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF07638.10 ECF sigma factor 2.1E-05 361-409 / 133-182
PF05331.10 Protein of unknown function (DUF742) 0.00045 360-405 / 37-82
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00047 361-409 / 39-88
PF04545.15 Sigma-70, region 4 0.00056 361-405 / 4-53
PF06530.11 Phage antitermination protein Q 0.0012 363-411 / 65-114
PF07374.10 Protein of unknown function (DUF1492) 0.0013 361-405 / 54-100
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.0017 361-411 / 17-68
PF02001.15 Protein of unknown function DUF134 0.0018 360-411 / 30-82
PF16264.4 SatD family (SatD) 0.0029 360-410 / 149-205
PF08281.11 Sigma-70, region 4 0.003 361-403 / 10-53
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.005 362-408 / 3-51
PF16509.4 TrfB plasmid transcriptional repressor 0.0056 361-408 / 15-63

Annotations of the NCBI proteins of this PHROG


5:hypothetical protein 2:luxR family regulatory protein 1:Response regulator 1:response regulator 1:luxR family protein 1:major head-like protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0016987 sigma factor activity
GO:0003677 DNA binding
GO:0060567 negative regulation of DNA-templated transcription, termination
GO:0003700 DNA binding transcription factor activity
GO:0006352 DNA-templated transcription, initiation
GO:0006355 regulation of transcription, DNA-templated

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