ID |
Definition |
Evalue |
posQ/posS |
PF10654.8 |
Protein of unknown function (DUF2481) |
3.8E-05 |
41-68 / 78-105 |
PF07750.10 |
GcrA cell cycle regulator |
4E-05 |
40-68 / 15-44 |
PF08535.9 |
KorB domain |
6.1E-05 |
42-69 / 2-29 |
PF07141.10 |
Putative bacteriophage terminase small subunit |
8E-05 |
40-67 / 28-55 |
PF00356.20 |
Bacterial regulatory proteins, lacI family |
9.5E-05 |
45-67 / 1-23 |
PF12824.6 |
Mitochondrial ribosomal protein subunit L20 |
0.00011 |
43-67 / 107-131 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
0.00012 |
41-67 / 11-37 |
PF07453.12 |
NUMOD1 domain |
0.00014 |
43-64 / 19-40 |
PF01381.21 |
Helix-turn-helix |
0.00016 |
41-67 / 7-33 |
PF04936.11 |
Protein of unknown function (DUF658) |
0.0045 |
42-67 / 87-112 |
PF08765.10 |
Mor transcription activator family |
0.00018 |
42-68 / 71-97 |
PF12759.6 |
InsA C-terminal domain |
0.00019 |
41-66 / 19-44 |
PF04552.12 |
Sigma-54, DNA binding domain |
0.00026 |
41-67 / 46-72 |
PF13413.5 |
Helix-turn-helix domain |
0.00027 |
41-67 / 7-33 |
PF08822.10 |
Protein of unknown function (DUF1804) |
0.0003 |
41-67 / 17-43 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.00031 |
42-65 / 7-30 |
PF05344.10 |
Domain of Unknown Function (DUF746) |
0.00034 |
41-67 / 10-36 |
PF13309.5 |
HTH domain |
0.00039 |
44-65 / 42-63 |
PF06322.10 |
Phage NinH protein |
0.0004 |
41-68 / 14-41 |
PF10078.8 |
Uncharacterized protein conserved in bacteria (DUF2316) |
0.00045 |
40-68 / 20-48 |
PF00292.17 |
'Paired box' domain |
0.00049 |
41-67 / 31-57 |
PF03333.12 |
Adhesin biosynthesis transcription regulatory protein |
0.00049 |
41-68 / 53-80 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
0.00052 |
42-66 / 15-39 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
0.00058 |
42-67 / 22-47 |
PF01710.15 |
Transposase |
0.00059 |
41-67 / 16-42 |
PF02796.14 |
Helix-turn-helix domain of resolvase |
0.00061 |
42-66 / 20-44 |
PF13011.5 |
leucine-zipper of insertion element IS481 |
0.00066 |
41-68 / 22-49 |
PF07278.10 |
Protein of unknown function (DUF1441) |
0.00067 |
44-68 / 2-26 |
PF06806.11 |
Putative excisionase (DUF1233) |
0.00067 |
42-66 / 8-32 |
PF09607.9 |
Brinker DNA-binding domain |
0.00069 |
44-68 / 26-50 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
0.00075 |
43-67 / 23-47 |
PF00376.22 |
MerR family regulatory protein |
0.00076 |
46-67 / 2-23 |
PF13411.5 |
MerR HTH family regulatory protein |
0.0008 |
45-67 / 2-24 |
PF11112.7 |
Pyocin activator protein PrtN |
0.00088 |
42-68 / 12-39 |
PF05930.11 |
Prophage CP4-57 regulatory protein (AlpA) |
0.00088 |
44-65 / 4-25 |
PF12116.7 |
Stage III sporulation protein D |
0.00089 |
42-67 / 18-43 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
0.00095 |
45-65 / 53-73 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
0.001 |
42-67 / 18-43 |
PF14493.5 |
Helix-turn-helix domain |
0.001 |
41-67 / 10-36 |
PF13936.5 |
Helix-turn-helix domain |
0.0013 |
41-65 / 18-42 |
PF05225.15 |
helix-turn-helix, Psq domain |
0.0013 |
41-67 / 14-41 |
PF00440.22 |
Bacterial regulatory proteins, tetR family |
0.0013 |
44-68 / 16-40 |
PF15978.4 |
Tn7-like transposition protein D |
0.0013 |
42-67 / 202-227 |
PF06413.10 |
Neugrin |
0.0013 |
43-67 / 29-53 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
0.0013 |
45-66 / 2-23 |
PF13744.5 |
Helix-turn-helix domain |
0.0014 |
41-67 / 29-55 |
PF07638.10 |
ECF sigma factor |
0.0015 |
40-67 / 146-173 |
PF13591.5 |
MerR HTH family regulatory protein |
0.0015 |
45-67 / 2-24 |
PF02042.14 |
RWP-RK domain |
0.0015 |
41-67 / 10-36 |
PF10743.8 |
Regulatory phage protein cox |
0.0015 |
42-67 / 10-35 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.0015 |
42-66 / 16-40 |
PF10975.7 |
Protein of unknown function (DUF2802) |
0.0015 |
37-65 / 37-65 |
PF07506.10 |
RepB plasmid partitioning protein |
0.0016 |
40-67 / 18-45 |
PF13443.5 |
Cro/C1-type HTH DNA-binding domain |
0.0016 |
42-66 / 9-34 |
PF13022.5 |
Helix-turn-helix of insertion element transposase |
0.0017 |
42-67 / 24-49 |
PF12964.6 |
Protein of unknown function (DUF3853) |
0.0017 |
42-68 / 44-70 |
PF06971.12 |
Putative DNA-binding protein N-terminus |
0.0017 |
43-64 / 27-48 |
PF13542.5 |
Helix-turn-helix domain of transposase family ISL3 |
0.0018 |
42-66 / 26-49 |
PF09035.9 |
Excisionase from transposon Tn916 |
0.0019 |
42-65 / 14-37 |
PF07825.10 |
Excisionase-like protein |
0.002 |
44-68 / 3-29 |
PF08222.10 |
CodY helix-turn-helix domain |
0.0021 |
43-67 / 4-28 |
PF12728.6 |
Helix-turn-helix domain |
0.0021 |
44-67 / 2-26 |
PF05331.10 |
Protein of unknown function (DUF742) |
0.0021 |
42-67 / 52-77 |
PF11242.7 |
Protein of unknown function (DUF2774) |
0.0022 |
41-67 / 12-38 |
PF11427.7 |
Tc3 transposase |
0.0024 |
42-67 / 19-44 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
0.0025 |
42-67 / 16-41 |
PF05339.10 |
Protein of unknown function (DUF739) |
0.0026 |
41-67 / 14-40 |
PF13556.5 |
PucR C-terminal helix-turn-helix domain |
0.003 |
42-67 / 11-36 |
PF10668.8 |
Phage terminase small subunit |
0.0032 |
43-68 / 22-47 |
PF07022.12 |
Bacteriophage CI repressor helix-turn-helix domain |
0.0035 |
43-68 / 11-37 |
PF16221.4 |
winged helix-turn-helix |
0.0036 |
43-68 / 46-71 |
PF01371.18 |
Trp repressor protein |
0.0036 |
40-68 / 45-73 |
PF07471.11 |
Phage DNA packaging protein Nu1 |
0.0036 |
44-67 / 3-26 |
PF04967.11 |
HTH DNA binding domain |
0.0037 |
43-67 / 23-47 |
PF05043.12 |
Mga helix-turn-helix domain |
0.0037 |
42-67 / 29-54 |
PF16509.4 |
TrfB plasmid transcriptional repressor |
0.0037 |
41-67 / 29-55 |
PF04492.12 |
Bacteriophage replication protein O |
0.0042 |
43-67 / 49-73 |
PF08281.11 |
Sigma-70, region 4 |
0.0043 |
41-67 / 24-50 |
PF14590.5 |
Domain of unknown function (DUF4447) |
0.0043 |
42-67 / 19-44 |
PF04545.15 |
Sigma-70, region 4 |
0.0043 |
42-66 / 23-47 |
PF04645.11 |
Protein of unknown function, DUF603 |
0.0049 |
42-67 / 18-47 |
PF16677.4 |
DNA-packaging protein gp3 |
0.0049 |
42-67 / 28-53 |
PF08279.11 |
HTH domain |
0.0052 |
42-67 / 14-39 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.0055 |
44-66 / 3-25 |
PF09012.9 |
FeoC like transcriptional regulator |
0.0059 |
42-67 / 13-38 |
PF06627.10 |
Protein of unknown function (DUF1153) |
0.0062 |
41-68 / 44-71 |
PF07381.10 |
Winged helix DNA-binding domain (DUF1495) |
0.0062 |
41-65 / 22-46 |
PF13518.5 |
Helix-turn-helix domain |
0.0064 |
42-67 / 10-35 |
PF12844.6 |
Helix-turn-helix domain |
0.0068 |
42-67 / 11-36 |
PF00196.18 |
Bacterial regulatory proteins, luxR family |
0.0069 |
42-69 / 16-43 |
PF13560.5 |
Helix-turn-helix domain |
0.0071 |
41-67 / 12-38 |
PF09182.9 |
Bacterial purine repressor, N-terminal |
0.0071 |
42-67 / 19-44 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
0.0072 |
41-67 / 16-42 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.0073 |
43-67 / 34-58 |
PF04814.12 |
Hepatocyte nuclear factor 1 (HNF-1), N terminus |
0.0075 |
41-67 / 124-150 |
PF09824.8 |
ArsR transcriptional regulator |
0.0075 |
17-67 / 10-52 |
PF08004.10 |
Protein of unknown function (DUF1699) |
0.008 |
39-64 / 100-129 |
PF02001.15 |
Protein of unknown function DUF134 |
0.0081 |
41-67 / 45-71 |
PF01527.19 |
Transposase |
0.0083 |
41-68 / 19-46 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
0.0084 |
42-67 / 15-40 |
PF16264.4 |
SatD family (SatD) |
0.0085 |
42-67 / 170-195 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.0086 |
44-67 / 12-35 |
PF08280.10 |
M protein trans-acting positive regulator (MGA) HTH domain |
0.0086 |
42-67 / 19-44 |