phrog_6401 is made of 19 protein sequences and is annotated as "DNA binding protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
68.32 100 64


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
MG757155_p60 AVD99566.1 helix turn helix DNA-binding protein MG757155 Gordonia phage Boneham Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Woesvirus; unclassified Woesvirus.
NC_028966_p50 YP_009214816.1 DNA binding protein NC_028966 Tsukamurella phage TIN3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tinduovirus.
NC_028865_p49 YP_009204484.1 DNA binding protein NC_028865 Tsukamurella phage TIN2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tinduovirus.
NC_031229_p56 YP_009301007.1 HTH DNA-binding protein NC_031229 Gordonia phage Hotorobo Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Woesvirus.
NC_030905_p54 YP_009273445.1 HTH DNA binding protein NC_030905 Gordonia phage Woes Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Woesvirus.
MG757152_p59 AVD99155.1 HTH DNA binding protein MG757152 Gordonia phage Adgers Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Montyvirus; unclassified Montyvirus.
MG099940_p61 AUE22173.1 helix-turn-helix DNA binding protein MG099940 Gordonia phage BirksAndSocks Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Montyvirus; Gordonia virus Birksandsocks.
MH025889_p54 AVP43239.1 helix-turn-helix DNA binding domain protein MH025889 Gordonia phage Hail2Pitt Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Woesvirus; unclassified Woesvirus.
MG770211_p55 AUV60351.1 HTH DNA-binding protein MG770211 Gordonia phage Flakey Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Montyvirus; Gordonia virus Flakey.
MG770214_p55 AUV60658.1 helix-turn-helix DNA binding domain protein MG770214 Gordonia phage SteveFrench Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Montyvirus; Gordonia virus Stevefrench.
NC_028673_p49 YP_009189186.1 putative DNA binding protein NC_028673 Gordonia phage GMA7 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Getseptimavirus; Gordonia virus GMA7.
NC_016166_p48 YP_004934749.1 DNA binding protein NC_016166 Gordonia phage GTE7 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Getseptimavirus; Gordonia virus GTE7.
NC_030924_p55 YP_009275122.1 HTH DNA binding protein NC_030924 Gordonia phage Monty Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Montyvirus.
p229227 no NCBI prot ID no annotation VI_04176 Actinobacteria_gi_484064923_31_33894 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p229264 no NCBI prot ID no annotation VI_04175 Actinobacteria_gi_484063094_9427_43290 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
NC_031108_p34 YP_009290941.1 hypothetical protein NC_031108 Propionibacterium phage PFR2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pulverervirus; unclassified Pulverervirus.
NC_031076_p32 YP_009287708.1 hypothetical protein NC_031076 Propionibacterium phage PFR1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pulverervirus.
p225357 no NCBI prot ID no annotation VI_06249 Epsilonproteobacteria_gi_419538725 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
p418369 no NCBI prot ID no annotation VI_06274 Epsilonproteobacteria_gi_419617153 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_192 559 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 13 4.05E-36 26.51
phrog_10671 10 no annotation unknown function 9 2.65E-45 35.7
phrog_5931 21 no annotation unknown function 2 7.81E-11 1.23
phrog_29331 2 no annotation unknown function 2 0 1000
phrog_36710 2 no annotation unknown function 2 0 1000
phrog_35101 2 no annotation unknown function 2 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism 99.0 3.3E-13 3-58 / 14-69
phrog_11671 no annotation unknown function 93.8 0.0068 4-53 / 2-52
phrog_15534 HTH DNA binding protein DNA, RNA and nucleotide metabolism 96.6 1.9E-05 2-59 / 32-87
phrog_16396 no annotation unknown function 94.9 0.0016 9-59 / 11-68
phrog_1840 excisionase integration and excision 95.8 0.0003 9-57 / 6-55
phrog_1969 no annotation unknown function 91.1 0.041 5-38 / 50-83
phrog_21603 no annotation unknown function 93.6 0.0082 10-60 / 4-55
phrog_22141 DNA binding protein DNA, RNA and nucleotide metabolism 91.8 0.029 8-53 / 36-81
phrog_2474 MerR-like transcriptional regulator transcription regulation 93.4 0.0093 7-53 / 13-60
phrog_25262 no annotation unknown function 94.9 0.0017 8-59 / 33-84
phrog_25665 excisionase integration and excision 95.5 0.00052 7-61 / 23-76
phrog_2655 excisionase integration and excision 98.0 7.1E-09 5-54 / 3-55
phrog_2790 excisionase and transcriptional regulator integration and excision 95.8 0.00027 5-57 / 33-86
phrog_2907 excisionase integration and excision 96.5 2.9E-05 8-55 / 4-55
phrog_4691 excisionase integration and excision 96.3 5.8E-05 7-61 / 16-70
phrog_4745 DNA binding protein DNA, RNA and nucleotide metabolism 90.3 0.057 7-60 / 2-62
phrog_575 Cox-like excisionase and repressor integration and excision 95.5 0.00061 3-42 / 7-46
phrog_57 terminase small subunit head and packaging 96.9 7E-06 9-60 / 2-54
phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism 94.9 0.0016 5-59 / 10-62
phrog_6058 no annotation unknown function 95.4 0.0007 9-58 / 5-60
phrog_629 excisionase integration and excision 91.5 0.033 9-51 / 4-51
phrog_6620 transposase integration and excision 96.2 8.7E-05 8-57 / 2-52
phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 97.0 4E-06 4-58 / 31-84
phrog_66 excisionase and transcriptional regulator integration and excision 98.7 1.3E-11 3-62 / 3-62
phrog_7067 terminase small subunit head and packaging 92.0 0.026 10-32 / 32-54
phrog_7338 no annotation unknown function 95.6 0.00045 6-60 / 27-80
phrog_7735 excisionase integration and excision 96.3 7.1E-05 9-56 / 17-64
phrog_7950 transcriptional repressor transcription regulation 90.6 0.051 9-32 / 22-45
phrog_9099 no annotation unknown function 93.2 0.011 6-63 / 56-114
phrog_9285 no annotation unknown function 90.6 0.052 4-50 / 29-77
phrog_9668 excisionase integration and excision 92.0 0.026 8-59 / 2-57
phrog_9759 DNA binding protein DNA, RNA and nucleotide metabolism 90.0 0.064 10-34 / 19-43

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF11112.7 Pyocin activator protein PrtN 1.1E-09 28-81 / 11-70
PF12964.6 Protein of unknown function (DUF3853) 8.2E-09 26-79 / 41-95
PF06806.11 Putative excisionase (DUF1233) 8.6E-09 26-80 / 5-69
PF07618.10 Protein of unknown function (DUF1580) 2.5E-08 31-80 / 3-56
PF09035.9 Excisionase from transposon Tn916 3.4E-08 26-80 / 11-66
PF10743.8 Regulatory phage protein cox 5.6E-08 27-84 / 8-70
PF07825.10 Excisionase-like protein 1.5E-07 30-73 / 2-48
PF12728.6 Helix-turn-helix domain 1.7E-07 30-79 / 1-50
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 4E-07 29-76 / 2-51
PF13591.5 MerR HTH family regulatory protein 4.5E-07 31-76 / 1-45
PF07471.11 Phage DNA packaging protein Nu1 6.6E-07 30-82 / 2-58
PF07278.10 Protein of unknown function (DUF1441) 2E-06 31-81 / 2-51
PF17443.1 Uncharacterized protein pXO2-72 2.8E-06 27-55 / 5-33
PF13411.5 MerR HTH family regulatory protein 5.2E-06 31-76 / 1-47
PF00376.22 MerR family regulatory protein 3.2E-05 33-59 / 2-28
PF08876.10 Domain of unknown function (DUF1836) 0.0002 30-75 / 10-61
PF04936.11 Protein of unknown function (DUF658) 0.0054 29-59 / 87-117
PF13171.5 Protein of unknown function (DUF4004) 0.00056 30-78 / 2-56
PF16701.4 Adenylate cyclase regulatory domain 0.0014 28-59 / 56-88
PF07453.12 NUMOD1 domain 0.0018 28-50 / 17-39
PF00356.20 Bacterial regulatory proteins, lacI family 0.0044 32-54 / 1-23
PF07141.10 Putative bacteriophage terminase small subunit 0.0047 30-53 / 31-54
PF10654.8 Protein of unknown function (DUF2481) 0.0059 29-53 / 79-103
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.006 32-52 / 53-73
PF01381.21 Helix-turn-helix 0.0063 29-53 / 8-32
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 0.0075 30-53 / 13-36
PF06322.10 Phage NinH protein 0.0076 30-55 / 16-41
PF02954.18 Bacterial regulatory protein, Fis family 0.008 30-52 / 16-38

Annotations of the NCBI proteins of this PHROG


4:DNA binding protein 3:HTH DNA binding protein 2:hypothetical protein 2:helix-turn-helix DNA binding domain protein 2:HTH DNA-binding protein 1:helix turn helix DNA-binding protein 1:helix-turn-helix DNA binding protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0003677 DNA binding
GO:0006310 DNA recombination
GO:0019069 viral capsid assembly
GO:0043565 sequence-specific DNA binding
GO:0006355 regulation of transcription, DNA-templated
GO:0005524 ATP binding

Loading in process