phrog_7067 is made of 17 protein sequences and is annotated as "terminase small subunit"
Functional category: head and packaging


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
63.94 93 56


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_034627_p52 YP_009362914.1 hypothetical protein NC_034627 Sulfolobus islandicus rod-shaped virus 6 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_004087_p45 NP_666633.1 hypothetical protein NC_004087 Sulfolobus islandicus rod-shaped virus 1 Viruses; Ligamenvirales; Rudiviridae; Rudivirus.
NC_034619_p50 YP_009362550.1 hypothetical protein NC_034619 Sulfolobus islandicus rod-shaped virus 7 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_034623_p9 YP_009362682.1 hypothetical protein NC_034623 Sulfolobus islandicus rod-shaped virus 8 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_030884_p1 YP_009272953.1 HTH transcriptional regulator NC_030884 Sulfolobus islandicus rudivirus 3 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
AJ748296_p1 CAG38821.1 hypothetical protein AJ748296 Sulfolobus islandicus rudivirus 1 variant XX Viruses; Ligamenvirales; Rudiviridae; Rudivirus; Sulfolobus islandicus rod-shaped virus 1.
NC_034628_p51 YP_009362969.1 hypothetical protein NC_034628 Sulfolobus islandicus rod-shaped virus 4 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_034620_p7 YP_009362559.1 hypothetical protein NC_034620 Sulfolobus islandicus rod-shaped virus 9 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_034621_p53 YP_009362663.1 hypothetical protein NC_034621 Sulfolobus islandicus rod-shaped virus 5 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_025375_p37 YP_009094262.1 hypothetical protein NC_025375 Stygiolobus rod-shaped virus Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_004087_p1 NP_666589.1 hypothetical protein NC_004087 Sulfolobus islandicus rod-shaped virus 1 Viruses; Ligamenvirales; Rudiviridae; Rudivirus.
NC_034624_p47 YP_009362781.1 hypothetical protein NC_034624 Sulfolobus islandicus rod-shaped virus 11 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
AJ748296_p46 CAG38866.1 hypothetical protein AJ748296 Sulfolobus islandicus rudivirus 1 variant XX Viruses; Ligamenvirales; Rudiviridae; Rudivirus; Sulfolobus islandicus rod-shaped virus 1.
NC_004086_p54 NP_666588.1 hypothetical protein NC_004086 Sulfolobus islandicus rod-shaped virus 2 Viruses; Ligamenvirales; Rudiviridae; Rudivirus.
NC_004086_p1 NP_666535.1 hypothetical protein NC_004086 Sulfolobus islandicus rod-shaped virus 2 Viruses; Ligamenvirales; Rudiviridae; Rudivirus.
NC_034625_p4 YP_009362788.1 hypothetical protein NC_034625 Sulfolobus islandicus rod-shaped virus 10 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.
NC_030884_p45 YP_009272997.1 hypothetical protein NC_030884 Sulfolobus islandicus rudivirus 3 Viruses; Ligamenvirales; Rudiviridae; Rudivirus; unclassified Rudivirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_13082 8 no annotation unknown function 8 0 1000
phrog_12890 8 no annotation unknown function 6 4.05E-32 22.51
phrog_4902 27 no annotation unknown function 4 8.71E-19 9.18
phrog_13653 7 no annotation unknown function 3 1.62E-17 7.91

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 90.2 0.06 24-52 / 134-162
phrog_11108 no annotation unknown function 92.8 0.016 22-54 / 50-82
phrog_11376 no annotation unknown function 91.4 0.035 26-53 / 53-80
phrog_11457 no annotation unknown function 93.4 0.01 26-49 / 18-41
phrog_1157 transposase integration and excision 96.1 0.00011 18-54 / 5-40
phrog_1190 RNA polymerase sigma factor transcription regulation 92.7 0.017 28-53 / 150-175
phrog_12540 no annotation unknown function 90.2 0.059 19-52 / 17-50
phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 92.4 0.02 21-53 / 148-180
phrog_1337 DNA binding protein DNA, RNA and nucleotide metabolism 93.4 0.0098 23-54 / 11-42
phrog_141 terminase small subunit head and packaging 92.5 0.019 31-55 / 9-33
phrog_151 transposase integration and excision 94.2 0.0045 21-52 / 13-44
phrog_16553 transcriptional repressor transcription regulation 94.2 0.0045 16-51 / 7-42
phrog_1728 transcriptional regulator transcription regulation 90.2 0.059 21-53 / 6-38
phrog_1740 RNA polymerase sigma factor transcription regulation 94.4 0.0034 28-52 / 139-163
phrog_20467 HNH endonuclease DNA, RNA and nucleotide metabolism 91.8 0.028 13-51 / 53-90
phrog_2159 ParB-like partition protein DNA, RNA and nucleotide metabolism 93.7 0.0073 15-50 / 115-150
phrog_21603 no annotation unknown function 90.3 0.057 31-54 / 3-26
phrog_2308 no annotation unknown function 92.8 0.016 24-52 / 9-37
phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism 90.4 0.055 20-52 / 26-58
phrog_23834 no annotation unknown function 94.3 0.0038 30-53 / 14-37
phrog_2538 terminase small subunit head and packaging 94.3 0.0041 27-53 / 15-41
phrog_268 no annotation unknown function 93.0 0.013 30-54 / 16-39
phrog_2727 no annotation unknown function 93.6 0.0085 25-53 / 20-47
phrog_27475 no annotation unknown function 94.5 0.0033 24-53 / 10-39
phrog_309 terminase small subunit head and packaging 95.8 0.00028 22-53 / 15-46
phrog_323 transcriptional regulator, D5-like transcription regulation 96.6 2.3E-05 14-52 / 48-85
phrog_3282 sigma factor transcription regulation 95.5 0.00056 28-55 / 29-56
phrog_3470 no annotation unknown function 93.8 0.0064 31-53 / 6-28
phrog_357 transcriptional repressor transcription regulation 92.6 0.017 21-48 / 14-41
phrog_3757 no annotation unknown function 92.1 0.024 18-54 / 335-371
phrog_3855 HTH DNA binding protein DNA, RNA and nucleotide metabolism 96.7 1.8E-05 18-53 / 66-101
phrog_3865 no annotation unknown function 93.5 0.0086 26-54 / 19-47
phrog_3 transcriptional repressor transcription regulation 95.2 0.001 23-52 / 8-37
phrog_409 transcriptional regulator transcription regulation 91.4 0.035 29-52 / 9-31
phrog_4291 RNA-dependent RNA polymerase DNA, RNA and nucleotide metabolism 93.8 0.0066 24-54 / 876-906
phrog_4494 no annotation unknown function 93.7 0.0075 22-53 / 8-39
phrog_4779 transcriptional regulator transcription regulation 93.1 0.012 25-53 / 8-36
phrog_5751 terminase large subunit head and packaging 91.3 0.038 19-51 / 6-38
phrog_57 terminase small subunit head and packaging 94.2 0.0044 31-53 / 2-24
phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism 91.7 0.031 28-51 / 11-35
phrog_6156 endonuclease DNA, RNA and nucleotide metabolism 94.5 0.0031 15-51 / 19-54
phrog_63 anti-repressor Ant transcription regulation 91.4 0.036 28-54 / 148-175
phrog_645 Rnase E DNA, RNA and nucleotide metabolism 91.6 0.031 24-52 / 28-56
phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 94.9 0.0016 21-52 / 9-40
phrog_66 excisionase and transcriptional regulator integration and excision 95.2 0.001 30-53 / 8-31
phrog_6831 transcriptional regulator transcription regulation 93.1 0.013 21-51 / 5-35
phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism 92.7 0.017 17-50 / 22-56
phrog_7061 HTH DNA binding protein DNA, RNA and nucleotide metabolism 95.0 0.0016 15-53 / 28-66
phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 90.5 0.052 17-53 / 7-40
phrog_769 transcriptional repressor transcription regulation 93.2 0.012 22-52 / 16-46
phrog_7847 no annotation unknown function 94.8 0.0021 24-53 / 10-39
phrog_79 anti-termination protein Q-like transcription regulation 91.1 0.041 19-52 / 66-99
phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover 93.5 0.009 33-53 / 20-40
phrog_8245 HicB-like antitoxin moron, auxiliary metabolic gene and host takeover 93.6 0.008 21-53 / 95-127
phrog_836 late transcriptional activator transcription regulation 93.1 0.012 28-53 / 106-131
phrog_8446 HNH endonuclease DNA, RNA and nucleotide metabolism 92.2 0.023 28-53 / 14-39
phrog_8 transcriptional regulator transcription regulation 92.6 0.018 28-54 / 11-36
phrog_9217 transcriptional regulator transcription regulation 92.1 0.024 30-53 / 51-74
phrog_9759 DNA binding protein DNA, RNA and nucleotide metabolism 94.6 0.0026 32-54 / 19-41

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF07141.10 Putative bacteriophage terminase small subunit 1.6E-05 58-91 / 22-55
PF06056.11 Putative ATPase subunit of terminase (gpP-like) 1.8E-05 60-91 / 6-37
PF12759.6 InsA C-terminal domain 2.1E-05 59-91 / 13-45
PF07750.10 GcrA cell cycle regulator 2.1E-05 58-91 / 9-43
PF05344.10 Domain of Unknown Function (DUF746) 2.4E-05 63-92 / 8-37
PF05331.10 Protein of unknown function (DUF742) 3.7E-05 53-92 / 39-78
PF07638.10 ECF sigma factor 6.4E-05 53-92 / 134-174
PF08822.10 Protein of unknown function (DUF1804) 7.2E-05 60-91 / 11-43
PF00292.17 'Paired box' domain 8E-05 59-91 / 25-57
PF01710.15 Transposase 9.9E-05 60-91 / 11-42
PF08765.10 Mor transcription activator family 0.0001 60-92 / 66-97
PF03333.12 Adhesin biosynthesis transcription regulatory protein 0.00012 63-92 / 51-80
PF04936.11 Protein of unknown function (DUF658) 0.0033 66-91 / 87-112
PF09607.9 Brinker DNA-binding domain 0.00014 68-91 / 26-49
PF14493.5 Helix-turn-helix domain 0.00017 63-91 / 8-36
PF06322.10 Phage NinH protein 0.00018 65-92 / 14-41
PF10654.8 Protein of unknown function (DUF2481) 0.00018 63-90 / 76-103
PF13011.5 leucine-zipper of insertion element IS481 0.00021 64-92 / 21-49
PF13613.5 Helix-turn-helix of DDE superfamily endonuclease 0.00025 65-92 / 17-44
PF13542.5 Helix-turn-helix domain of transposase family ISL3 0.00025 62-91 / 22-50
PF11242.7 Protein of unknown function (DUF2774) 0.00025 61-91 / 8-38
PF02796.14 Helix-turn-helix domain of resolvase 0.00031 64-90 / 18-44
PF04545.15 Sigma-70, region 4 0.00035 66-91 / 23-48
PF04218.12 CENP-B N-terminal DNA-binding domain 0.00038 67-91 / 23-47
PF02954.18 Bacterial regulatory protein, Fis family 0.00039 66-90 / 15-39
PF00196.18 Bacterial regulatory proteins, luxR family 0.00043 61-91 / 11-41
PF17443.1 Uncharacterized protein pXO2-72 0.00043 66-89 / 7-30
PF13936.5 Helix-turn-helix domain 0.00044 63-90 / 16-43
PF13518.5 Helix-turn-helix domain 0.00046 66-92 / 10-36
PF04552.12 Sigma-54, DNA binding domain 0.00047 64-91 / 45-72
PF13412.5 Winged helix-turn-helix DNA-binding 0.0005 66-92 / 16-42
PF01371.18 Trp repressor protein 0.00059 63-91 / 44-72
PF08281.11 Sigma-70, region 4 0.00064 64-91 / 23-50
PF01381.21 Helix-turn-helix 0.00068 65-90 / 7-32
PF16087.4 Domain of unknown function (DUF4817) 0.00067 62-92 / 11-49
PF08535.9 KorB domain 0.00069 66-91 / 2-27
PF10668.8 Phage terminase small subunit 0.00069 67-91 / 22-46
PF13411.5 MerR HTH family regulatory protein 0.00072 69-90 / 2-23
PF00126.26 Bacterial regulatory helix-turn-helix protein, lysR family 0.00073 66-91 / 10-35
PF13309.5 HTH domain 0.00077 68-89 / 42-63
PF06627.10 Protein of unknown function (DUF1153) 0.00078 65-92 / 44-71
PF13556.5 PucR C-terminal helix-turn-helix domain 0.00083 65-92 / 10-37
PF10975.7 Protein of unknown function (DUF2802) 0.00084 55-88 / 31-64
PF11427.7 Tc3 transposase 0.00093 64-91 / 17-44
PF00376.22 MerR family regulatory protein 0.001 70-90 / 2-22
PF00356.20 Bacterial regulatory proteins, lacI family 0.0011 69-90 / 1-22
PF05225.15 helix-turn-helix, Psq domain 0.0011 65-91 / 14-41
PF15978.4 Tn7-like transposition protein D 0.0011 59-91 / 194-227
PF07453.12 NUMOD1 domain 0.0012 68-88 / 20-40
PF11112.7 Pyocin activator protein PrtN 0.0012 67-90 / 13-37
PF13551.5 Winged helix-turn helix 0.0013 65-91 / 9-35
PF06806.11 Putative excisionase (DUF1233) 0.0013 68-89 / 10-31
PF13404.5 AsnC-type helix-turn-helix domain 0.0014 66-91 / 16-41
PF13591.5 MerR HTH family regulatory protein 0.0015 69-90 / 2-23
PF04297.13 Putative helix-turn-helix protein, YlxM / p13 like 0.0015 65-91 / 31-57
PF07374.10 Protein of unknown function (DUF1492) 0.0015 55-91 / 58-95
PF05930.11 Prophage CP4-57 regulatory protein (AlpA) 0.0016 68-89 / 4-25
PF16677.4 DNA-packaging protein gp3 0.0016 66-91 / 28-53
PF16509.4 TrfB plasmid transcriptional repressor 0.0017 64-91 / 28-55
PF13384.5 Homeodomain-like domain 0.0017 64-90 / 14-40
PF01527.19 Transposase 0.0018 65-91 / 19-45
PF06970.10 Replication initiator protein A (RepA) N-terminus 0.0019 69-90 / 53-74
PF02001.15 Protein of unknown function DUF134 0.002 55-91 / 34-71
PF07278.10 Protein of unknown function (DUF1441) 0.002 68-90 / 2-24
PF01418.16 Helix-turn-helix domain, rpiR family 0.0022 67-91 / 34-58
PF12824.6 Mitochondrial ribosomal protein subunit L20 0.0023 59-90 / 96-130
PF13413.5 Helix-turn-helix domain 0.0024 65-90 / 7-32
PF16264.4 SatD family (SatD) 0.0025 66-91 / 170-195
PF07825.10 Excisionase-like protein 0.0028 68-90 / 3-27
PF06530.11 Phage antitermination protein Q 0.003 63-91 / 75-103
PF02042.14 RWP-RK domain 0.0031 66-90 / 11-35
PF08280.10 M protein trans-acting positive regulator (MGA) HTH domain 0.0034 67-91 / 20-44
PF10743.8 Regulatory phage protein cox 0.0034 66-90 / 10-34
PF09035.9 Excisionase from transposon Tn916 0.0034 66-88 / 14-36
PF07037.10 Putative transcription regulator (DUF1323) 0.0035 69-90 / 2-23
PF10007.8 Uncharacterized protein conserved in archaea (DUF2250) 0.0038 58-91 / 11-46
PF02319.19 E2F/DP family winged-helix DNA-binding domain 0.0039 66-91 / 22-47
PF00325.19 Bacterial regulatory proteins, crp family 0.0041 68-91 / 3-26
PF07506.10 RepB plasmid partitioning protein 0.004 61-90 / 15-44
PF12802.6 MarR family 0.0045 68-91 / 22-45
PF04492.12 Bacteriophage replication protein O 0.0045 67-91 / 49-73
PF12728.6 Helix-turn-helix domain 0.0046 68-89 / 2-24
PF01022.19 Bacterial regulatory protein, arsR family 0.0047 67-91 / 16-40
PF08222.10 CodY helix-turn-helix domain 0.0047 67-91 / 4-28
PF06971.12 Putative DNA-binding protein N-terminus 0.0048 67-88 / 27-48
PF12116.7 Stage III sporulation protein D 0.0049 66-90 / 18-42
PF04967.11 HTH DNA binding domain 0.0051 68-91 / 24-47
PF05043.12 Mga helix-turn-helix domain 0.0053 67-92 / 30-55
PF12964.6 Protein of unknown function (DUF3853) 0.006 66-90 / 44-68
PF09182.9 Bacterial purine repressor, N-terminal 0.0061 66-91 / 19-44
PF08004.10 Protein of unknown function (DUF1699) 0.0062 57-88 / 94-129
PF13022.5 Helix-turn-helix of insertion element transposase 0.007 67-89 / 25-47
PF07471.11 Phage DNA packaging protein Nu1 0.007 68-90 / 3-25
PF00440.22 Bacterial regulatory proteins, tetR family 0.0075 68-91 / 16-39
PF08279.11 HTH domain 0.0081 66-91 / 14-39
PF12793.6 Sugar transport-related sRNA regulator N-term 0.0086 65-91 / 16-42

Annotations of the NCBI proteins of this PHROG


11:protein of an unannotated phage 5:hypothetical protein 1:HTH transcriptional regulator

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006310 DNA recombination
GO:0003677 DNA binding
GO:0003700 DNA binding transcription factor activity
GO:0006313 transposition, DNA-mediated
GO:0000150 recombinase activity
GO:0016987 sigma factor activity
GO:0005667 transcription factor complex
GO:0045892 negative regulation of transcription, DNA-templated
GO:0006260 DNA replication
GO:0005622 intracellular
GO:0043565 sequence-specific DNA binding
GO:0004803 transposase activity
GO:0005524 ATP binding
GO:0019069 viral capsid assembly
GO:0060567 negative regulation of DNA-templated transcription, termination
GO:0006352 DNA-templated transcription, initiation
GO:0051775 response to redox state
GO:0006355 regulation of transcription, DNA-templated
GO:0005737 cytoplasm

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