ID |
Definition |
Evalue |
posQ/posS |
PF04492.12 |
Bacteriophage replication protein O |
1.4E-08 |
35-78 / 49-92 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
2E-08 |
33-73 / 21-61 |
PF01726.15 |
LexA DNA binding domain |
1.7E-07 |
35-70 / 25-61 |
PF07106.12 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
1.8E-07 |
33-79 / 14-62 |
PF04358.12 |
DsrC like protein |
2.7E-07 |
13-68 / 36-94 |
PF01978.18 |
Sugar-specific transcriptional regulator TrmB |
4.4E-07 |
34-73 / 21-60 |
PF10007.8 |
Uncharacterized protein conserved in archaea (DUF2250) |
4.8E-07 |
16-69 / 8-56 |
PF16221.4 |
winged helix-turn-helix |
5.8E-07 |
34-67 / 45-78 |
PF08222.10 |
CodY helix-turn-helix domain |
6.4E-07 |
35-69 / 4-38 |
PF06163.10 |
Bacterial protein of unknown function (DUF977) |
6.9E-07 |
34-71 / 25-62 |
PF03965.15 |
Penicillinase repressor |
7.2E-07 |
36-70 / 19-58 |
PF14277.5 |
Domain of unknown function (DUF4364) |
9.8E-07 |
34-68 / 14-52 |
PF09012.9 |
FeoC like transcriptional regulator |
1.1E-06 |
34-71 / 13-50 |
PF08221.10 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
1.1E-06 |
15-68 / 12-60 |
PF02295.16 |
Adenosine deaminase z-alpha domain |
1.5E-06 |
35-69 / 18-53 |
PF07381.10 |
Winged helix DNA-binding domain (DUF1495) |
1.5E-06 |
34-69 / 23-68 |
PF01325.18 |
Iron dependent repressor, N-terminal DNA binding domain |
1.7E-06 |
34-70 / 20-56 |
PF08784.10 |
Replication protein A C terminal |
2.4E-06 |
34-69 / 57-95 |
PF13463.5 |
Winged helix DNA-binding domain |
2.5E-06 |
34-68 / 16-50 |
PF04079.15 |
Segregation and condensation complex subunit ScpB |
2.9E-06 |
34-69 / 96-128 |
PF07848.11 |
PaaX-like protein |
4E-06 |
34-71 / 19-59 |
PF09114.9 |
Transcription factor MotA, activation domain |
4.9E-06 |
13-69 / 13-65 |
PF15977.4 |
Winged helix-turn-helix DNA binding |
5E-06 |
34-69 / 22-57 |
PF05732.10 |
Firmicute plasmid replication protein (RepL) |
5.1E-06 |
34-70 / 74-110 |
PF05584.10 |
Sulfolobus plasmid regulatory protein |
5.4E-06 |
34-69 / 17-52 |
PF14394.5 |
Domain of unknown function (DUF4423) |
5.6E-06 |
36-69 / 37-72 |
PF01090.18 |
Ribosomal protein S19e |
5.9E-06 |
34-69 / 64-114 |
PF03428.12 |
Replication protein C N-terminal domain |
6E-06 |
36-69 / 71-105 |
PF10771.8 |
Winged helix-turn-helix domain (DUF2582) |
6.7E-06 |
33-71 / 20-58 |
PF03444.14 |
Winged helix-turn-helix transcription repressor, HrcA DNA-binding |
7.1E-06 |
34-69 / 23-58 |
PF04182.11 |
B-block binding subunit of TFIIIC |
7.1E-06 |
34-69 / 17-52 |
PF02002.16 |
TFIIE alpha subunit |
7.6E-06 |
34-69 / 25-60 |
PF09904.8 |
Winged helix-turn helix |
7.8E-06 |
34-67 / 20-53 |
PF01475.18 |
Ferric uptake regulator family |
7.8E-06 |
17-70 / 8-62 |
PF02082.19 |
Transcriptional regulator |
8E-06 |
36-69 / 25-58 |
PF13601.5 |
Winged helix DNA-binding domain |
9E-06 |
34-69 / 13-48 |
PF03551.13 |
Transcriptional regulator PadR-like family |
9E-06 |
34-69 / 13-50 |
PF09339.9 |
IclR helix-turn-helix domain |
9.1E-06 |
36-67 / 19-50 |
PF12802.6 |
MarR family |
1.1E-05 |
36-69 / 22-55 |
PF13545.5 |
Crp-like helix-turn-helix domain |
1.2E-05 |
34-69 / 26-61 |
PF14502.5 |
Helix-turn-helix domain |
1.3E-05 |
35-69 / 6-40 |
PF00392.20 |
Bacterial regulatory proteins, gntR family |
1.4E-05 |
34-70 / 22-59 |
PF01316.20 |
Arginine repressor, DNA binding domain |
1.4E-05 |
34-78 / 18-64 |
PF16365.4 |
Ethanolamine utilization protein EutK C-terminus |
1.5E-05 |
34-68 / 16-50 |
PF08220.11 |
DeoR-like helix-turn-helix domain |
1.6E-05 |
34-70 / 13-49 |
PF11313.7 |
Protein of unknown function (DUF3116) |
1.8E-05 |
36-70 / 21-62 |
PF09202.10 |
Rio2, N-terminal |
2E-05 |
34-69 / 23-58 |
PF07900.10 |
Protein of unknown function (DUF1670) |
2.3E-05 |
34-69 / 94-129 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
2.4E-05 |
34-68 / 17-51 |
PF01047.21 |
MarR family |
2.6E-05 |
35-69 / 17-51 |
PF05158.11 |
RNA polymerase Rpc34 subunit |
0.0011 |
14-77 / 11-77 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
2.8E-05 |
35-65 / 17-47 |
PF12840.6 |
Helix-turn-helix domain |
2.8E-05 |
34-69 / 22-54 |
PF09824.8 |
ArsR transcriptional regulator |
2.8E-05 |
34-68 / 29-61 |
PF09182.9 |
Bacterial purine repressor, N-terminal |
2.9E-05 |
34-68 / 19-58 |
PF08279.11 |
HTH domain |
3.5E-05 |
34-63 / 14-43 |
PF01022.19 |
Bacterial regulatory protein, arsR family |
3.5E-05 |
35-65 / 16-46 |
PF14947.5 |
Winged helix-turn-helix |
3.8E-05 |
34-68 / 15-49 |
PF03297.14 |
S25 ribosomal protein |
4.4E-05 |
34-68 / 55-89 |
PF13730.5 |
Helix-turn-helix domain |
4.5E-05 |
37-65 / 28-52 |
PF14557.5 |
Putative AphA-like transcriptional regulator |
5.6E-05 |
34-69 / 24-67 |
PF05491.12 |
Holliday junction DNA helicase ruvB C-terminus |
6.1E-05 |
34-69 / 24-60 |
PF08461.9 |
Ribonuclease R winged-helix domain |
6.4E-05 |
36-71 / 13-53 |
PF10711.8 |
Hypothetical protein (DUF2513) |
7.1E-05 |
35-69 / 18-56 |
PF01638.16 |
HxlR-like helix-turn-helix |
7.3E-05 |
34-69 / 18-54 |
PF09681.9 |
N-terminal phage replisome organiser (Phage_rep_org_N) |
8.1E-05 |
36-68 / 54-86 |
PF06969.15 |
HemN C-terminal domain |
8.3E-05 |
35-68 / 20-54 |
PF09639.9 |
YjcQ protein |
8.4E-05 |
34-69 / 15-52 |
PF16864.4 |
Dimerisation domain |
9.6E-05 |
34-68 / 31-65 |
PF11972.7 |
HTH DNA binding domain |
9.8E-05 |
34-67 / 12-42 |
PF04703.11 |
FaeA-like protein |
0.00012 |
34-69 / 13-48 |
PF08679.10 |
Dissimilatory sulfite reductase D (DsrD) |
0.00011 |
35-76 / 16-58 |
PF05331.10 |
Protein of unknown function (DUF742) |
0.00012 |
35-70 / 53-88 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
0.00015 |
37-59 / 53-75 |
PF07183.10 |
Protein of unknown function (DUF1403) |
0.00018 |
36-76 / 289-328 |
PF09857.8 |
Putative toxin of bacterial toxin-antitoxin pair |
0.00022 |
38-69 / 29-63 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.00025 |
37-69 / 13-48 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.00026 |
34-68 / 7-50 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.00029 |
35-68 / 34-67 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.00032 |
37-65 / 4-32 |
PF08535.9 |
KorB domain |
0.00031 |
35-68 / 3-36 |
PF02334.15 |
Replication terminator protein |
0.00037 |
35-69 / 31-74 |
PF09756.8 |
DDRGK domain |
0.00053 |
34-79 / 114-160 |
PF09397.9 |
Ftsk gamma domain |
0.00061 |
34-69 / 18-53 |
PF05043.12 |
Mga helix-turn-helix domain |
0.001 |
34-62 / 29-57 |
PF09107.10 |
Elongation factor SelB, winged helix |
0.0011 |
34-70 / 7-43 |
PF07453.12 |
NUMOD1 domain |
0.0015 |
36-56 / 20-40 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.0016 |
35-59 / 17-41 |
PF13591.5 |
MerR HTH family regulatory protein |
0.0027 |
37-68 / 2-29 |
PF07789.11 |
Protein of unknown function (DUF1627) |
0.0033 |
34-68 / 5-39 |
PF06971.12 |
Putative DNA-binding protein N-terminus |
0.0039 |
35-56 / 27-48 |
PF08280.10 |
M protein trans-acting positive regulator (MGA) HTH domain |
0.0039 |
34-62 / 19-47 |
PF13635.5 |
Domain of unknown function (DUF4143) |
0.004 |
36-68 / 31-65 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
0.0042 |
35-65 / 13-43 |
PF11994.7 |
Protein of unknown function (DUF3489) |
0.0045 |
33-63 / 19-49 |
PF12324.7 |
Helix-turn-helix domain of alkylmercury lyase |
0.0047 |
32-61 / 32-61 |
PF09821.8 |
C-terminal AAA-associated domain |
0.0061 |
40-68 / 2-30 |
PF13518.5 |
Helix-turn-helix domain |
0.0066 |
37-66 / 13-42 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
0.0071 |
35-58 / 16-39 |
PF11427.7 |
Tc3 transposase |
0.0075 |
36-62 / 21-47 |
PF13338.5 |
Transcriptional regulator, AbiEi antitoxin |
0.0077 |
34-73 / 12-46 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
0.0079 |
35-61 / 19-45 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
0.0081 |
37-65 / 2-27 |
PF03962.14 |
Mnd1 family |
0.0078 |
35-79 / 10-58 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
0.0088 |
36-61 / 24-49 |
PF04967.11 |
HTH DNA binding domain |
0.0088 |
36-61 / 24-49 |
PF00356.20 |
Bacterial regulatory proteins, lacI family |
0.0088 |
38-59 / 2-23 |