phrog_8238 is made of 14 protein sequences and is annotated as "RNA ligase"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
724.07 901 743


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_019511_p182 YP_007005657.1 hypothetical protein NC_019511 Staphylococcus virus SA11 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus.
NC_015253_p147 YP_004301480.1 gp147 NC_015253 Brochothrix phage A9 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Brochothrix virus A9.
NC_028962_p102 YP_009214557.1 RNA ligase NC_028962 Staphylococcus phage phiIPLA-C1C Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Sepunavirus.
p345394 no NCBI prot ID no annotation VI_00475 Bacilli_gi_397738363 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales.
NC_007021_p139 YP_238673.1 ORF008 NC_007021 Staphylococcus phage Twort Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Twortvirus.
MF787246_p62 ATG86369.1 RNA ligase MF787246 Lactobacillus phage LpeD Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; unclassified Herelleviridae.
KY794642_p121 ARM69262.1 RNA ligase KY794642 Staphylococcus phage vB_Sau_Clo6 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Kayvirus; unclassified Kayvirus.
KF021268_p99 AGR48227.1 hypothetical protein KF021268 Staphylococcus phage phiIBB-SEP1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Sepunavirus; Staphylococcus virus SEP1.
KY794643_p121 ARM69476.1 RNA ligase KY794643 Staphylococcus phage vB_Sau_S24 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Kayvirus; unclassified Kayvirus.
NC_012530_p41 YP_002790720.1 putative protein phosphatase NC_012530 Lactobacillus virus Lb338-1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae.
MG765277_p136 AUV60021.1 hypothetical protein MG765277 Lactobacillus phage Bacchae Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Harbinvirus; Lactobacillus virus Bacchae.
MG765279_p51 AUV60116.1 hypothetical protein MG765279 Lactobacillus phage Semele Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Harbinvirus; Lactobacillus virus Semele.
NC_020877_p143 YP_007677647.1 hypothetical protein NC_020877 Staphylococcus phage vB_SauM_Romulus Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus.
NC_022090_p153 YP_008431287.1 putative 2,3-cyclic nucleotide 3-phosphodiesterase (putative) NC_022090 Staphylococcus phage vB_SauM_Remus Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Silviavirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_30853 2 no annotation unknown function 2 0 1000
phrog_38111 2 no annotation unknown function 2 0 1000
phrog_11757 9 no annotation unknown function 2 2.26E-12 2.77
phrog_29421 2 no annotation unknown function 2 0 1000
phrog_34352 2 no annotation unknown function 2 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 95.6 0.00041 173-246 / 2-93
phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 92.6 0.018 3-33 / 15-45
phrog_1649 metallo-phosphoesterase other 94.5 0.0031 172-250 / 4-84
phrog_1815 guanylate kinase other 95.7 0.00033 1-124 / 1-136
phrog_20114 phosphoesterase other 98.6 2.6E-11 170-225 / 1-55
phrog_2071 ATPase other 99.4 8.4E-17 1-142 / 2-131
phrog_21952 RNA ligase DNA, RNA and nucleotide metabolism 100.0 2.2E-34 617-734 / 2-118
phrog_221 metallo-phosphoesterase other 93.6 0.0079 171-276 / 2-132
phrog_246 NinI-like serine-threonine phosphatase other 99.6 4.2E-19 169-380 / 10-218
phrog_28031 no annotation unknown function 95.9 0.0002 174-256 / 143-231
phrog_4581 terminase small subunit head and packaging 95.7 0.00038 2-124 / 121-235
phrog_505 polynucleotide kinase other 99.5 1.3E-18 1-196 / 1-230
phrog_547 phosphoesterase other 93.9 0.0059 173-245 / 3-86
phrog_562 RNA ligase and tail fiber protein attachment catalyst tail 99.6 6.1E-19 430-680 / 26-258
phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 93.7 0.0075 161-298 / 175-295
phrog_6931 no annotation unknown function 99.1 2.9E-14 1-147 / 186-335
phrog_761 thymidylate kinase other 94.9 0.0017 1-126 / 1-139
phrog_800 terminase small subunit head and packaging 93.8 0.0065 101-141 / 115-155
phrog_9096 no annotation unknown function 93.4 0.0098 198-254 / 38-87

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF09511.9 RNA ligase 1.6E-23 458-672 / 1-231
PF14582.5 Metallophosphoesterase, calcineurin superfamily 2.3E-11 170-352 / 7-203
PF09423.9 PhoD-like phosphatase 1.3E-09 274-355 / 193-274
PF12850.6 Calcineurin-like phosphoesterase superfamily domain 5.1E-08 174-244 / 2-61
PF00625.20 Guanylate kinase 2.5E-07 1-21 / 1-21
PF08433.9 Chromatin associated protein KTI12 6.4E-07 2-124 / 1-121
PF01712.18 Deoxynucleoside kinase 1E-06 101-125 / 115-138
PF13671.5 AAA domain 1E-06 4-124 / 1-121
PF02223.16 Thymidylate kinase 3.4E-06 101-124 / 118-140
PF03976.13 Polyphosphate kinase 2 (PPK2) 6E-06 101-124 / 132-154
PF07931.11 Chloramphenicol phosphotransferase-like protein 6E-06 2-21 / 1-20
PF06414.11 Zeta toxin 6.7E-06 2-124 / 14-140
PF13238.5 AAA domain 9.7E-06 101-125 / 133-156
PF13277.5 YmdB-like protein 1E-05 176-355 / 1-180
PF01745.15 Isopentenyl transferase 2.3E-05 2-34 / 1-35
PF00406.21 Adenylate kinase 3.6E-05 7-124 / 1-122
PF01591.17 6-phosphofructo-2-kinase 4.4E-05 2-21 / 9-28
PF01583.19 Adenylylsulphate kinase 5.8E-05 1-21 / 1-21
PF13207.5 AAA domain 5.8E-05 8-36 / 1-31
PF00149.27 Calcineurin-like phosphoesterase 8E-05 174-242 / 2-81
PF01202.21 Shikimate kinase 0.00017 102-124 / 84-105
PF03668.14 P-loop ATPase protein family 0.00029 2-30 / 1-30
PF13189.5 Cytidylate kinase-like family 0.0003 4-33 / 1-32
PF08303.10 tRNA ligase kinase domain 0.00041 4-33 / 1-33
PF00693.17 Thymidine kinase from herpesvirus 0.0015 100-125 / 147-171
PF01121.19 Dephospho-CoA kinase 0.0016 3-34 / 1-34
PF13521.5 AAA domain 0.0047 4-21 / 1-18
PF00485.17 Phosphoribulokinase / Uridine kinase family 0.0058 4-21 / 1-18
PF02224.17 Cytidylate kinase 0.0062 5-33 / 1-31

Annotations of the NCBI proteins of this PHROG


5:hypothetical protein 4:RNA ligase 1:phosphodiesterase 1:protein phosphatase 1:2,3-cyclic nucleotide 3-phosphodiesterase (putative) 1:protein of an unannotated phage

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0004127 cytidylate kinase activity
GO:0016787 hydrolase activity
GO:0003873 6-phosphofructo-2-kinase activity
GO:0009058 biosynthetic process
GO:0004161 dimethylallyltranstransferase activity
GO:0003972 RNA ligase (ATP) activity
GO:0004797 thymidine kinase activity
GO:0015937 coenzyme A biosynthetic process
GO:0016740 transferase activity
GO:0016301 kinase activity
GO:0008152 metabolic process
GO:0006000 fructose metabolic process
GO:0004140 dephospho-CoA kinase activity
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0005524 ATP binding
GO:0006139 nucleobase-containing compound metabolic process
GO:0006230 TMP biosynthetic process

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