phrog_8337 is made of 13 protein sequences and is annotated as "DNA repair protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
273.15 381 261


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
NC_028762_p33 YP_009195451.1 RecA-like recombination protein NC_028762 Proteus phage vB_PmiM_Pm5461 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; unclassified Tevenvirinae.
MF001355_p12 ASZ76298.1 RecA-like recombination protein MF001355 Proteus phage PM2 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; unclassified Tevenvirinae.
KU160494_p86 ALY07082.1 hypothetical protein KU160494 Vibrio phage vB_VmeM-32 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; unclassified Tevenvirinae.
NC_031047_p151 YP_009284146.1 putative recA-like recombination protein NC_031047 Escherichia phage HY03 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; Tequatrovirus; Escherichia virus HY03.
NC_028820_p44 YP_009200305.1 RecA-like recombination protein NC_028820 Yersinia phage vB_YenM_TG1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tegunavirus.
KX961630_p141 AOZ62062.1 recombinase A KX961630 Bacillus phage QCM8 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Bastillevirinae; Tsarbombavirus; unclassified Tsarbombavirus.
NC_031245_p95 YP_009302482.1 RecA protein NC_031245 Bacillus phage SP-15 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Thornevirus; Bacillus virus SP15.
NC_021327_p100 YP_008059142.1 RadA NC_021327 Halovirus HCTV-5 Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses.
NC_021330_p99 YP_008059661.1 RadA NC_021330 Halovirus HCTV-1 Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses.
NC_020158_p104 YP_007379010.1 DNA repair, RadA-like protein NC_020158 Halovirus HVTV-1 Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses.
NC_027335_p40 YP_009147044.1 putative recombinase A NC_027335 Enterococcus phage ECP3 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Brockvirinae; Kochikohdavirus; Enterococcus virus ECP3.
KY549443_p30 APZ81957.1 recombinase A KY549443 Enterococcus phage EFP01 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Brockvirinae; Schiekvirus; Enterococcus virus EFP01.
NC_029042_p208 YP_009220952.1 recombination protein NC_029042 Salmonella phage 38 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; Cvivirinae; Kuttervirus.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_314 390 homing endonuclease DNA, RNA and nucleotide metabolism 4 3.01E-13 3.64
phrog_37683 2 no annotation unknown function 2 0 1000
phrog_3891 36 no annotation unknown function 2 7.81E-11 1.23

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 96.5 3E-05 58-207 / 11-145
phrog_1366 no annotation unknown function 96.7 1.3E-05 63-201 / 16-153
phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 98.4 3.8E-10 40-206 / 175-349
phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 97.7 9.8E-08 40-207 / 286-472
phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 96.8 1.2E-05 37-207 / 12-194
phrog_296 DNA transposition protein integration and excision 93.2 0.011 53-157 / 83-175
phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 92.3 0.022 47-170 / 341-475
phrog_6891 ATPase other 96.9 7.5E-06 49-205 / 22-152
phrog_8290 RecA or Sak4, length ? other 98.2 2.2E-09 19-73 / 20-71
phrog_97 UvsX-like recombinase other 100.0 2.4E-51 11-226 / 1-225

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF00154.20 recA bacterial DNA recombination protein 2.7E-12 69-264 / 31-222
PF03796.14 DnaB-like helicase C terminal domain 2.3E-11 72-264 / 3-216
PF08423.10 Rad51 2.9E-11 70-262 / 18-222
PF06745.12 KaiC 3.3E-10 72-130 / 2-58
PF13481.5 AAA domain 1.6E-09 71-114 / 11-53
PF09807.8 Elongation complex protein 6 1.3E-08 77-130 / 3-56
PF01079.19 Hint module 1.4E-08 244-347 / 8-113
PF07088.10 GvpD gas vesicle protein 0.00065 72-127 / 241-297
PF05625.10 PAXNEB protein 4.4E-07 68-129 / 16-78
PF08517.11 Ataxin-1 and HBP1 module (AXH) 7.2E-07 267-347 / 14-112
PF02456.14 Adenovirus IVa2 protein 8.7E-07 91-114 / 82-107
PF03846.13 Cell division inhibitor SulA 4.7E-06 78-130 / 12-64
PF14890.5 Intein splicing domain 8.3E-06 290-346 / 55-113
PF04665.11 Poxvirus A32 protein 1E-05 84-114 / 8-38
PF13479.5 AAA domain 1.2E-05 89-110 / 2-23
PF02572.14 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 1.2E-05 91-129 / 2-38
PF05707.11 Zonular occludens toxin (Zot) 1.2E-05 91-110 / 2-21
PF09818.8 Predicted ATPase of the ABC class 1.3E-05 85-113 / 244-272
PF02283.15 Cobinamide kinase / cobinamide phosphate guanyltransferase 2.2E-05 92-129 / 1-33
PF05621.10 Bacterial TniB protein 2.3E-05 90-113 / 39-62
PF13403.5 Hint domain 2.4E-05 260-346 / 9-113
PF00488.20 MutS domain V 3.4E-05 92-114 / 1-23
PF01637.17 ATPase domain predominantly from Archaea 8.5E-05 88-114 / 19-45
PF14623.5 Hint-domain 0.00021 260-345 / 9-85
PF00437.19 Type II/IV secretion system protein 0.00023 89-114 / 130-155
PF00625.20 Guanylate kinase 0.00027 89-113 / 2-26
PF07931.11 Chloramphenicol phosphotransferase-like protein 0.00036 90-113 / 2-25
PF03976.13 Polyphosphate kinase 2 (PPK2) 0.00049 87-114 / 26-53
PF00006.24 ATP synthase alpha/beta family, nucleotide-binding domain 0.00054 86-114 / 11-39
PF06414.11 Zeta toxin 0.00057 88-113 / 13-38
PF13521.5 AAA domain 0.00058 92-112 / 2-22
PF00485.17 Phosphoribulokinase / Uridine kinase family 0.0006 91-114 / 1-24
PF00265.17 Thymidine kinase 0.00065 89-128 / 1-38
PF13671.5 AAA domain 0.00065 91-112 / 1-22
PF05203.15 Hom_end-associated Hint 0.00069 260-343 / 8-110
PF07591.10 Pretoxin HINT domain 0.00075 302-346 / 44-84
PF08433.9 Chromatin associated protein KTI12 0.00085 91-114 / 3-26
PF01745.15 Isopentenyl transferase 0.00087 90-113 / 2-25
PF01121.19 Dephospho-CoA kinase 0.00095 91-113 / 2-24
PF13238.5 AAA domain 0.00095 92-113 / 1-22
PF13189.5 Cytidylate kinase-like family 0.001 91-113 / 1-23
PF13173.5 AAA domain 0.0011 89-112 / 2-25
PF08303.10 tRNA ligase kinase domain 0.0011 91-112 / 1-22
PF01591.17 6-phosphofructo-2-kinase 0.0011 88-113 / 8-33
PF13476.5 AAA domain 0.0011 90-113 / 21-44
PF01712.18 Deoxynucleoside kinase 0.0013 92-113 / 1-22
PF10649.8 Protein of unknown function (DUF2478) 0.0013 93-114 / 2-23
PF07015.10 VirC1 protein 0.0013 92-130 / 5-41
PF16575.4 mRNA cleavage and polyadenylation factor CLP1 P-loop 0.0014 96-130 / 1-33
PF00910.21 RNA helicase 0.0016 93-113 / 2-22
PF11602.7 ATPase P4 of dsRNA bacteriophage phi-12 0.0016 83-114 / 116-147
PF01583.19 Adenylylsulphate kinase 0.0017 89-114 / 2-27
PF01695.16 IstB-like ATP binding protein 0.0017 86-114 / 45-73
PF05272.10 Virulence-associated protein E 0.0018 86-112 / 56-82
PF16813.4 CRISPR-associated protein Csn2 subfamily St 0.0018 86-114 / 12-40
PF02702.16 Osmosensitive K+ channel His kinase sensor domain 0.0019 89-114 / 4-29
PF03266.14 NTPase 0.0021 92-114 / 2-24
PF02223.16 Thymidylate kinase 0.0021 94-114 / 1-21
PF13401.5 AAA domain 0.0024 88-114 / 4-30
PF05729.11 NACHT domain 0.0025 91-114 / 2-25
PF00308.17 Bacterial dnaA protein 0.0026 89-114 / 33-58
PF00448.21 SRP54-type protein, GTPase domain 0.0027 90-128 / 2-39
PF02224.17 Cytidylate kinase 0.0027 92-113 / 1-22
PF04851.14 Type III restriction enzyme, res subunit 0.0028 88-114 / 22-48
PF13304.5 AAA domain, putative AbiEii toxin, Type IV TA system 0.003 91-109 / 1-19
PF03215.14 Rad17 cell cycle checkpoint protein 0.0032 88-113 / 44-69
PF14516.5 AAA-like domain 0.0034 88-114 / 29-55
PF12775.6 P-loop containing dynein motor region D3 0.0036 85-114 / 29-58
PF04275.13 Phosphomevalonate kinase 0.0036 94-113 / 1-20
PF06431.10 Polyomavirus large T antigen C-terminus 0.0036 87-113 / 153-179
PF05673.12 Protein of unknown function (DUF815) 0.0038 89-114 / 54-79
PF00158.25 Sigma-54 interaction domain 0.0039 87-114 / 20-47
PF09820.8 Predicted AAA-ATPase 0.004 88-114 / 30-56
PF03668.14 P-loop ATPase protein family 0.0042 90-111 / 2-23
PF05496.11 Holliday junction DNA helicase ruvB N-terminus 0.0043 88-112 / 44-68
PF13191.5 AAA ATPase domain 0.0045 89-114 / 24-49
PF00004.28 ATPase family associated with various cellular activities (AAA) 0.0045 92-113 / 1-22
PF07728.13 AAA domain (dynein-related subfamily) 0.0046 92-113 / 2-23
PF13166.5 AAA domain 0.0048 86-113 / 15-42
PF02562.15 PhoH-like protein 0.0049 88-113 / 18-43
PF01580.17 FtsK/SpoIIIE family 0.005 86-114 / 35-63
PF07652.13 Flavivirus DEAD domain 0.0051 88-111 / 3-27
PF01443.17 Viral (Superfamily 1) RNA helicase 0.0051 92-112 / 1-20
PF00406.21 Adenylate kinase 0.0054 94-113 / 1-20
PF07475.11 HPr Serine kinase C-terminal domain 0.0054 88-111 / 13-36
PF14532.5 Sigma-54 interaction domain 0.0057 87-113 / 19-45
PF01926.22 50S ribosome-binding GTPase 0.0057 92-112 / 2-22
PF13177.5 DNA polymerase III, delta subunit 0.0057 89-114 / 19-44
PF07693.13 KAP family P-loop domain 0.0062 88-114 / 30-56
PF01078.20 Magnesium chelatase, subunit ChlI 0.0063 87-114 / 20-47
PF09848.8 Uncharacterized conserved protein (DUF2075) 0.0063 90-113 / 2-25
PF12774.6 Hydrolytic ATP binding site of dynein motor region D1 0.0063 87-112 / 30-55
PF00142.17 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 0.0065 91-130 / 2-40
PF04310.11 MukB N-terminal 0.0068 89-114 / 26-51
PF03029.16 Conserved hypothetical ATP binding protein 0.0071 94-129 / 1-34
PF03969.15 AFG1-like ATPase 0.0072 87-114 / 65-92
PF13207.5 AAA domain 0.0078 95-113 / 1-19
PF00005.26 ABC transporter 0.0084 84-114 / 6-36
PF07726.10 ATPase family associated with various cellular activities (AAA) 0.0085 92-113 / 2-23

Annotations of the NCBI proteins of this PHROG


3:recombinase A 3:RecA-like recombination protein 2:RadA 1:RecA protein 1:DNA repair, RadA-like protein 1:recA-like recombination protein 1:hypothetical protein 1:recombination protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
K03553 recA : recombination protein RecA ko03440 Homologous recombination 115 3
K04484 radB : DNA repair protein RadB no pathways 87 1

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006000 fructose metabolic process
GO:0000166 nucleotide binding
GO:0006614 SRP-dependent cotranslational protein targeting to membrane
GO:0016740 transferase activity
GO:0006355 regulation of transcription, DNA-templated
GO:0005737 cytoplasm
GO:0015937 coenzyme A biosynthetic process
GO:0051188 cofactor biosynthetic process
GO:0002098 tRNA wobble uridine modification
GO:0007059 chromosome segregation
GO:0016020 membrane
GO:0006139 nucleobase-containing compound metabolic process
GO:0019072 viral genome packaging
GO:0003724 RNA helicase activity
GO:0009236 cobalamin biosynthetic process
GO:0008134 transcription factor binding
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0000160 phosphorelay signal transduction system
GO:0004140 dephospho-CoA kinase activity
GO:0016887 ATPase activity
GO:0033588 Elongator holoenzyme complex
GO:0051782 negative regulation of cell division
GO:0098519 nucleotide phosphatase activity, acting on free nucleotides
GO:0008233 peptidase activity
GO:0003873 6-phosphofructo-2-kinase activity
GO:0016787 hydrolase activity
GO:0009378 four-way junction helicase activity
GO:0003678 DNA helicase activity
GO:0006260 DNA replication
GO:0004127 cytidylate kinase activity
GO:0019073 viral DNA genome packaging
GO:0006310 DNA recombination
GO:0003677 DNA binding
GO:0043752 adenosylcobinamide kinase activity
GO:0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity
GO:0004673 protein histidine kinase activity
GO:0003972 RNA ligase (ATP) activity
GO:0006695 cholesterol biosynthetic process
GO:0004161 dimethylallyltranstransferase activity
GO:0006109 regulation of carbohydrate metabolic process
GO:0003697 single-stranded DNA binding
GO:0030261 chromosome condensation
GO:0006298 mismatch repair
GO:0008152 metabolic process
GO:0016301 kinase activity
GO:0006281 DNA repair
GO:0030908 protein splicing
GO:0003723 RNA binding
GO:0006508 proteolysis
GO:0005524 ATP binding
GO:0030983 mismatched DNA binding
GO:0000155 phosphorelay sensor kinase activity
GO:0016491 oxidoreductase activity
GO:0009058 biosynthetic process
GO:0004672 protein kinase activity
GO:0005525 GTP binding
GO:0004631 phosphomevalonate kinase activity
GO:0004797 thymidine kinase activity
GO:0008026 ATP-dependent helicase activity
GO:0009432 SOS response
GO:0055114 oxidation-reduction process
GO:0005515 protein binding
GO:0009295 nucleoid

Loading in process