ID |
Definition |
Evalue |
posQ/posS |
PF07638.10 |
ECF sigma factor |
1.1E-07 |
11-57 / 134-180 |
PF05331.10 |
Protein of unknown function (DUF742) |
6.4E-07 |
9-54 / 37-81 |
PF03333.12 |
Adhesin biosynthesis transcription regulatory protein |
7.6E-07 |
11-56 / 40-85 |
PF12759.6 |
InsA C-terminal domain |
2.1E-06 |
11-50 / 6-45 |
PF07750.10 |
GcrA cell cycle regulator |
2.2E-06 |
11-52 / 3-45 |
PF09607.9 |
Brinker DNA-binding domain |
5.1E-06 |
10-52 / 5-51 |
PF06530.11 |
Phage antitermination protein Q |
5E-06 |
12-58 / 65-111 |
PF06056.11 |
Putative ATPase subunit of terminase (gpP-like) |
5.5E-06 |
20-55 / 7-42 |
PF08822.10 |
Protein of unknown function (DUF1804) |
6.5E-06 |
11-53 / 3-46 |
PF01710.15 |
Transposase |
7.9E-06 |
11-52 / 3-44 |
PF07374.10 |
Protein of unknown function (DUF1492) |
9.4E-06 |
10-52 / 54-97 |
PF04545.15 |
Sigma-70, region 4 |
9.9E-06 |
10-52 / 4-50 |
PF00292.17 |
'Paired box' domain |
1E-05 |
10-52 / 17-59 |
PF13613.5 |
Helix-turn-helix of DDE superfamily endonuclease |
1.1E-05 |
12-55 / 4-48 |
PF07141.10 |
Putative bacteriophage terminase small subunit |
1.1E-05 |
16-52 / 21-57 |
PF04297.13 |
Putative helix-turn-helix protein, YlxM / p13 like |
1.3E-05 |
10-58 / 17-65 |
PF13011.5 |
leucine-zipper of insertion element IS481 |
1.8E-05 |
10-54 / 7-52 |
PF02001.15 |
Protein of unknown function DUF134 |
1.8E-05 |
11-58 / 32-79 |
PF04218.12 |
CENP-B N-terminal DNA-binding domain |
2E-05 |
11-53 / 7-50 |
PF13936.5 |
Helix-turn-helix domain |
2.5E-05 |
12-48 / 6-42 |
PF02796.14 |
Helix-turn-helix domain of resolvase |
2.6E-05 |
19-49 / 14-44 |
PF08281.11 |
Sigma-70, region 4 |
2.6E-05 |
11-51 / 11-51 |
PF16509.4 |
TrfB plasmid transcriptional repressor |
2.7E-05 |
10-55 / 15-60 |
PF13542.5 |
Helix-turn-helix domain of transposase family ISL3 |
3.2E-05 |
11-50 / 12-50 |
PF10668.8 |
Phage terminase small subunit |
4E-05 |
11-55 / 5-51 |
PF05344.10 |
Domain of Unknown Function (DUF746) |
4.5E-05 |
24-54 / 10-40 |
PF10654.8 |
Protein of unknown function (DUF2481) |
4.5E-05 |
23-56 / 77-110 |
PF16264.4 |
SatD family (SatD) |
5.6E-05 |
10-56 / 150-201 |
PF11427.7 |
Tc3 transposase |
8.2E-05 |
14-51 / 8-45 |
PF12824.6 |
Mitochondrial ribosomal protein subunit L20 |
9E-05 |
9-51 / 87-132 |
PF04552.12 |
Sigma-54, DNA binding domain |
9.7E-05 |
11-51 / 31-73 |
PF04936.11 |
Protein of unknown function (DUF658) |
0.0056 |
25-51 / 87-113 |
PF06627.10 |
Protein of unknown function (DUF1153) |
0.00012 |
10-54 / 29-74 |
PF06322.10 |
Phage NinH protein |
0.00015 |
25-53 / 15-43 |
PF13309.5 |
HTH domain |
0.00022 |
27-47 / 42-62 |
PF08765.10 |
Mor transcription activator family |
0.00022 |
25-52 / 71-98 |
PF05225.15 |
helix-turn-helix, Psq domain |
0.00023 |
25-51 / 15-42 |
PF10975.7 |
Protein of unknown function (DUF2802) |
0.00023 |
16-47 / 33-64 |
PF13384.5 |
Homeodomain-like domain |
0.00025 |
21-50 / 12-41 |
PF04967.11 |
HTH DNA binding domain |
0.00026 |
27-53 / 24-50 |
PF01527.19 |
Transposase |
0.00027 |
12-51 / 6-46 |
PF13412.5 |
Winged helix-turn-helix DNA-binding |
0.00029 |
25-52 / 16-43 |
PF16677.4 |
DNA-packaging protein gp3 |
0.0003 |
25-50 / 28-53 |
PF06413.10 |
Neugrin |
0.00029 |
7-49 / 7-52 |
PF01371.18 |
Trp repressor protein |
0.00031 |
22-53 / 44-75 |
PF13518.5 |
Helix-turn-helix domain |
0.00032 |
25-53 / 10-38 |
PF14493.5 |
Helix-turn-helix domain |
0.0004 |
23-53 / 9-39 |
PF11242.7 |
Protein of unknown function (DUF2774) |
0.0004 |
23-54 / 11-42 |
PF13404.5 |
AsnC-type helix-turn-helix domain |
0.00052 |
25-49 / 16-40 |
PF17443.1 |
Uncharacterized protein pXO2-72 |
0.00051 |
26-51 / 8-33 |
PF02954.18 |
Bacterial regulatory protein, Fis family |
0.00054 |
25-49 / 15-39 |
PF08535.9 |
KorB domain |
0.00083 |
26-51 / 3-28 |
PF07453.12 |
NUMOD1 domain |
0.00082 |
27-46 / 20-39 |
PF01381.21 |
Helix-turn-helix |
0.00084 |
25-49 / 8-32 |
PF13411.5 |
MerR HTH family regulatory protein |
0.00087 |
28-51 / 2-25 |
PF09862.8 |
Protein of unknown function (DUF2089) |
0.00089 |
11-54 / 34-77 |
PF13556.5 |
PucR C-terminal helix-turn-helix domain |
0.001 |
25-54 / 11-40 |
PF15978.4 |
Tn7-like transposition protein D |
0.0011 |
18-51 / 194-228 |
PF00356.20 |
Bacterial regulatory proteins, lacI family |
0.0012 |
28-50 / 1-23 |
PF00196.18 |
Bacterial regulatory proteins, luxR family |
0.0012 |
23-54 / 14-45 |
PF00376.22 |
MerR family regulatory protein |
0.0014 |
29-49 / 2-22 |
PF13551.5 |
Winged helix-turn helix |
0.0015 |
24-54 / 9-39 |
PF07506.10 |
RepB plasmid partitioning protein |
0.0014 |
11-50 / 5-45 |
PF06806.11 |
Putative excisionase (DUF1233) |
0.0015 |
27-48 / 10-31 |
PF05930.11 |
Prophage CP4-57 regulatory protein (AlpA) |
0.0016 |
27-48 / 4-25 |
PF13591.5 |
MerR HTH family regulatory protein |
0.0016 |
28-49 / 2-23 |
PF02319.19 |
E2F/DP family winged-helix DNA-binding domain |
0.0018 |
25-53 / 22-50 |
PF12802.6 |
MarR family |
0.0022 |
27-53 / 22-48 |
PF13413.5 |
Helix-turn-helix domain |
0.0023 |
25-50 / 8-33 |
PF00126.26 |
Bacterial regulatory helix-turn-helix protein, lysR family |
0.0025 |
25-53 / 10-38 |
PF08280.10 |
M protein trans-acting positive regulator (MGA) HTH domain |
0.0026 |
26-55 / 20-49 |
PF06970.10 |
Replication initiator protein A (RepA) N-terminus |
0.0026 |
28-49 / 53-74 |
PF07278.10 |
Protein of unknown function (DUF1441) |
0.003 |
27-50 / 2-25 |
PF13022.5 |
Helix-turn-helix of insertion element transposase |
0.0032 |
26-49 / 25-48 |
PF10743.8 |
Regulatory phage protein cox |
0.0033 |
25-50 / 10-35 |
PF09035.9 |
Excisionase from transposon Tn916 |
0.0035 |
26-48 / 15-37 |
PF04492.12 |
Bacteriophage replication protein O |
0.0037 |
26-54 / 49-77 |
PF08222.10 |
CodY helix-turn-helix domain |
0.0039 |
26-53 / 4-31 |
PF12728.6 |
Helix-turn-helix domain |
0.004 |
27-49 / 2-25 |
PF07037.10 |
Putative transcription regulator (DUF1323) |
0.004 |
28-49 / 2-23 |
PF02042.14 |
RWP-RK domain |
0.0044 |
25-50 / 11-36 |
PF01418.16 |
Helix-turn-helix domain, rpiR family |
0.0045 |
26-52 / 34-60 |
PF08004.10 |
Protein of unknown function (DUF1699) |
0.0047 |
12-47 / 90-129 |
PF12116.7 |
Stage III sporulation protein D |
0.0053 |
25-50 / 18-43 |
PF00325.19 |
Bacterial regulatory proteins, crp family |
0.0057 |
28-50 / 4-26 |
PF06971.12 |
Putative DNA-binding protein N-terminus |
0.006 |
26-47 / 27-48 |
PF06576.10 |
Protein of unknown function (DUF1133) |
0.0063 |
14-53 / 119-167 |
PF12298.7 |
Eukaryotic mitochondrial regulator protein |
0.0062 |
8-47 / 14-54 |
PF16221.4 |
winged helix-turn-helix |
0.007 |
26-53 / 46-73 |
PF05584.10 |
Sulfolobus plasmid regulatory protein |
0.0075 |
25-53 / 17-45 |
PF10078.8 |
Uncharacterized protein conserved in bacteria (DUF2316) |
0.0076 |
25-50 / 22-47 |
PF13725.5 |
Possible tRNA binding domain |
0.0076 |
11-55 / 100-144 |
PF12964.6 |
Protein of unknown function (DUF3853) |
0.0087 |
26-50 / 45-69 |
PF08221.10 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
0.009 |
25-52 / 26-53 |
PF12793.6 |
Sugar transport-related sRNA regulator N-term |
0.0092 |
25-54 / 17-46 |
PF07471.11 |
Phage DNA packaging protein Nu1 |
0.0093 |
27-49 / 3-25 |