phrog_9908 is made of 11 protein sequences and is annotated as "DNA binding protein"
Functional category: DNA, RNA and nucleotide metabolism


Average length of proteins Number of columns in the MSA Number of conserved columns in the MSA
285.64 353 284


List of all proteins of this PHROG

PHROG prot ID NCBI prot ID NCBI prot annotation Virus ID (click to view) Virus name Virus taxonomy
p34956 no NCBI prot ID no annotation VI_04131 Actinobacteria_gi_484014952 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
KY092480_p25 APD18555.1 DNA binding protein KY092480 Streptomyces phage Picard Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Picardvirus; Streptomyces virus Picard.
KY092482_p25 APD18666.1 DNA binding protein KY092482 Streptomyces phage Mojorita Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Picardvirus; unclassified Picardvirus.
p123249 no NCBI prot ID no annotation VI_00044 Actinobacteria_gi_483999582 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
JX006077_p120 AFM10507.1 helix-turn-helix domain protein JX006077 Saccharomonospora phage PIS 136 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p298483 no NCBI prot ID no annotation VI_04138 Actinobacteria_gi_484024972 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
p17947 no NCBI prot ID no annotation VI_00036 Actinobacteria_gi_482936492 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
KY092483_p28 APD18723.1 transcriptional regulator KY092483 Streptomyces phage Bioscum Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Austintatiousvirus; unclassified Austintatiousvirus.
KY092479_p28 APD18504.1 transcriptional regulator KY092479 Streptomyces phage Ididsumtinwong Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Austintatiousvirus; Streptomyces virus Ididsumtinwong.
p33618 no NCBI prot ID no annotation VI_04139 Actinobacteria_gi_484024991 Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses.
p241818 no NCBI prot ID no annotation VI_04140 Actinobacteria_gi_441157011 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.

PHROGs colocalized to this PHROG

PHROG #Prot Annotation Category #Neighbors Probability Score
phrog_10815 9 no annotation unknown function 9 0 1000

PHROGs similar to this PHROG

PHROG Annotation Category Probability Evalue posQ/posS
phrog_1373 transcriptional regulator transcription regulation 97.0 3.1E-06 15-69 / 32-86
phrog_147 transcriptional regulator transcription regulation 93.5 0.0089 15-63 / 3-51
phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism 91.2 0.039 14-68 / 24-79
phrog_2439 transcriptional regulator transcription regulation 95.1 0.0012 16-69 / 8-61
phrog_2967 transcriptional regulator transcription regulation 94.9 0.0017 13-69 / 7-64
phrog_38027 transcriptional repressor transcription regulation 91.5 0.033 18-62 / 61-105
phrog_3 transcriptional repressor transcription regulation 94.4 0.0033 16-69 / 5-58
phrog_4836 CII-like regulator transcription regulation 92.0 0.025 15-69 / 83-137
phrog_5823 transcriptional regulator transcription regulation 92.4 0.02 15-69 / 5-60
phrog_6463 HTH DNA binding protein DNA, RNA and nucleotide metabolism 94.6 0.0028 17-69 / 23-83
phrog_6499 transcriptional regulator transcription regulation 92.0 0.025 15-69 / 7-67
phrog_6831 transcriptional regulator transcription regulation 91.5 0.034 25-70 / 13-60
phrog_7241 transcriptional regulator transcription regulation 93.6 0.0082 18-73 / 65-120
phrog_7396 no annotation unknown function 94.7 0.0024 11-69 / 9-69
phrog_8 transcriptional regulator transcription regulation 96.0 0.00016 15-69 / 2-54
phrog_955 HTH DNA binding protein DNA, RNA and nucleotide metabolism 93.0 0.013 5-84 / 27-105

PFAMs similar to this PHROG

ID Definition Evalue posQ/posS
PF10078.8 Uncharacterized protein conserved in bacteria (DUF2316) 0.00079 151-217 / 11-80
PF13744.5 Helix-turn-helix domain 4.5E-06 49-110 / 17-79
PF14590.5 Domain of unknown function (DUF4447) 4.8E-06 49-113 / 6-73
PF05339.10 Protein of unknown function (DUF739) 5.7E-06 52-111 / 5-64
PF01381.21 Helix-turn-helix 6.4E-06 56-108 / 2-54
PF07022.12 Bacteriophage CI repressor helix-turn-helix domain 6.7E-06 54-112 / 2-60
PF04645.11 Protein of unknown function, DUF603 0.0043 192-229 / 6-46
PF13413.5 Helix-turn-helix domain 1.1E-05 56-107 / 2-59
PF13443.5 Cro/C1-type HTH DNA-binding domain 1.4E-05 55-112 / 2-62
PF12844.6 Helix-turn-helix domain 1.9E-05 54-111 / 3-60
PF13560.5 Helix-turn-helix domain 4.2E-05 51-109 / 2-63
PF15731.4 Antitoxin component of bacterial toxin-antitoxin system, MqsA 5E-05 51-110 / 70-128
PF08667.9 BetR domain 5.8E-05 49-113 / 4-72
PF05269.10 Bacteriophage CII protein 5.9E-05 51-113 / 9-71
PF15943.4 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 7.9E-05 58-112 / 4-57
PF08965.9 Domain of unknown function (DUF1870) 0.00021 52-111 / 3-67
PF14549.5 DNA-binding transcriptional regulator Cro 0.00032 55-111 / 2-54
PF13693.5 Winged helix-turn-helix DNA-binding 0.00051 53-112 / 5-61
PF00157.16 Pou domain - N-terminal to homeobox domain 0.0012 49-103 / 6-64
PF04814.12 Hepatocyte nuclear factor 1 (HNF-1), N terminus 0.0013 50-102 / 113-165
PF12116.7 Stage III sporulation protein D 0.0023 61-105 / 17-62
PF02376.14 CUT domain 0.0033 50-112 / 7-68
PF00356.20 Bacterial regulatory proteins, lacI family 0.0056 65-98 / 1-34

Annotations of the NCBI proteins of this PHROG


2:DNA binding protein 2:transcriptional regulator 1:helix-turn-helix domain protein

KEGG orthologous groups similar to this PHROG

ID Name : Definition Pathways BestScore #Hits
no KEGG group similar to this PHROG                                                            

GO terms in Uniprot proteins similar to this PHROG

ID Definition
GO:0006355 regulation of transcription, DNA-templated
GO:0005634 nucleus
GO:0045893 positive regulation of transcription, DNA-templated
GO:0003700 DNA binding transcription factor activity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0003677 DNA binding
GO:0043565 sequence-specific DNA binding

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