Genomic map of Staphylococcus virus phiSLT (AB045978)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AB045978
Definition
Staphylococcus phage phiSLT DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Triavirus.
DB of origin
NUCCORE
Length
42942
Host Name
Staphylococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
33.31
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BAB21706.1 AB045978_p12 phi PVL ORF 37 homologue phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 6436 6699
BAB21729.1 AB045978_p35 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 15752 16189
BAB21743.2 AB045978_p49 hypothetical protein phrog_167 tail length tape measure protein tail 1 25280 31483
BAB21746.1 AB045978_p51 hypothetical protein phrog_326 tail protein with endopeptidase domain other 1 32317 33900
BAB21709.1 AB045978_p15 phi PVL ORF 39 homologue phrog_401 unknown function unknown function 1 7273 7533
BAB21726.1 AB045978_p32 phi PVL ORF 57 homologue phrog_152 RinB-like transcriptional activator transcription regulation 1 15009 15164
BAB21731.1 AB045978_p37 terminase small subunit phrog_361 terminase small subunit head and packaging 1 16789 17094
BAB21703.1 AB045978_p9 hypothetical protein phrog_2366 unknown function unknown function -1 5296 5505
BAB21730.1 AB045978_p36 hypothetical protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16346 16660
BAB21695.1 AB045978_p1 integrase phrog_1 integrase integration and excision -1 113 1318
BAB21736.1 AB045978_p42 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 22019 22297
BAB21723.1 AB045978_p29 hypothetical protein phrog_2027 unknown function unknown function 1 14083 14328
BAB21702.1 AB045978_p8 hypothetical protein phrog_29672 unknown function unknown function 1 4889 5134
BAB21697.1 AB045978_p3 hypothetical protein phrog_1776 unknown function unknown function -1 2291 2686
BAB21711.1 AB045978_p17 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8083 8733
BAB21704.1 AB045978_p10 hypothetical protein phrog_750 unknown function unknown function -1 5776 6141
BAB21734.1 AB045978_p40 protease phrog_94 head maturation protease head and packaging 1 20002 20775
BAB21748.1 AB045978_p53 hypothetical protein phrog_287 minor tail protein tail 1 34206 36116
BAB21735.1 AB045978_p41 hypothetical protein phrog_10 major head protein head and packaging 1 20787 21950
BAB21705.1 AB045978_p11 hypothetical protein phrog_640 unknown function unknown function 1 6196 6411
BAB21750.1 AB045978_p55 hypothetical protein phrog_300 tail fiber protein tail 1 37582 37971
BAB21715.1 AB045978_p21 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 10345 11115
BAB21740.1 AB045978_p46 major tail protein phrog_88 major tail protein tail 1 23470 24111
BAB21745.1 AB045978_p50 hypothetical protein phrog_33 distal tail protein Dit tail 1 31483 32058
BAB21732.1 AB045978_p38 terminase large subunit phrog_9 terminase large subunit head and packaging 1 17084 18775
BAB21722.1 AB045978_p28 phi PVL ORF 53 homologue phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 13519 14046
BAB21698.1 AB045978_p4 hypothetical protein phrog_1759 unknown function unknown function -1 2715 3149
BAB21755.1 AB045978_p60 LukF-PV phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 41707 42684
BAB21725.1 AB045978_p31 hypothetical protein phrog_555 unknown function unknown function 1 14783 15019
BAB21700.1 AB045978_p6 repressor phrog_8 transcriptional regulator transcription regulation -1 3641 3955
BAB21710.1 AB045978_p16 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 7546 8082
BAB21716.1 AB045978_p22 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 11125 11904
BAB21752.1 AB045978_p57 holin phrog_263 holin lysis 1 38610 38912
BAB21696.1 AB045978_p2 phi PVL ORF 30 homologue phrog_716 Na/K ATPase other 1 1444 2058
BAB21733.1 AB045978_p39 portal protein phrog_12 portal protein head and packaging 1 18780 20018
BAB21701.1 AB045978_p7 antirepressor phrog_373 anti-repressor transcription regulation 1 4357 4905
BAB21738.1 AB045978_p44 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 22668 23039
BAB21707.1 AB045978_p13 phi PVL ORF 38 homologue phrog_369 unknown function unknown function 1 6712 6873
BAB21741.1 AB045978_p47 major tail protein phrog_341 major tail protein tail 1 24203 24658
BAB21753.1 AB045978_p58 amidase phrog_489 endolysin lysis 1 38923 40377
BAB21737.1 AB045978_p43 hypothetical protein phrog_25 head closure Hc1 connector 1 22309 22641
BAB21712.1 AB045978_p18 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8730 9173
BAB21754.1 AB045978_p59 LukS-PV phrog_965 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 40767 41705
BAB21714.1 AB045978_p20 hypothetical protein phrog_1902 unknown function unknown function 1 9856 10005
BAB21749.1 AB045978_p54 hypothetical protein phrog_257 minor tail protein tail 1 36116 37582
BAB21717.1 AB045978_p23 hypothetical protein phrog_433 unknown function unknown function 1 12069 12290
BAB21747.1 AB045978_p52 hypothetical protein phrog_574 unknown function unknown function 1 33900 34190
BAB21728.1 AB045978_p34 hypothetical protein phrog_11354 unknown function unknown function 1 15389 15739
BAB21718.1 AB045978_p24 hypothetical protein phrog_31719 unknown function unknown function 1 12300 12497
BAB21739.1 AB045978_p45 hypothetical protein phrog_78 tail terminator connector 1 23040 23435
BAB21742.1 AB045978_p48 hypothetical protein phrog_187 head-tail adaptor connector 1 24716 25066
BAB21727.1 AB045978_p33 hypothetical protein phrog_386 unknown function unknown function 1 15232 15432
BAB21751.1 AB045978_p56 hypothetical protein phrog_276 unknown function unknown function 1 38175 38474
BAB21699.1 AB045978_p5 hypothetical protein phrog_87 metallo-protease other -1 3167 3628
BAB21719.1 AB045978_p25 phi PVL ORF 50 homologue phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12649 13017
BAB21724.1 AB045978_p30 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14525 14758
BAB21721.1 AB045978_p27 phi PVL ORF 52 homologue phrog_266 unknown function unknown function 1 13278 13526
BAB21708.1 AB045978_p14 hypothetical protein phrog_983 unknown function unknown function 1 6966 7268
BAB21720.1 AB045978_p26 phi PVL ORF 51 homologue phrog_258 virulence associated other 1 13021 13263
BAB21713.1 AB045978_p19 hypothetical protein phrog_398 unknown function unknown function 1 9185 9859