Genomic map of Stx2-converting phage Stx2a_F349 (AP012530)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AP012530
Definition
Stx2-converting phage Stx2a_F349 proviral DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
59872
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
84
%GC
50.99
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BAT31971.1 AP012530_p88 hypothetical protein phrog_14889 unknown function unknown function -1 58791 58991
BAT31940.1 AP012530_p54 Rz lysis protein phrog_13 Rz-like spanin lysis 1 29516 29953
BAT31892.1 AP012530_p5 hypothetical protein singleton unknown function unknown function -1 2535 2648
BAT31964.1 AP012530_p81 tail assembly protein phrog_32 tail assembly protein tail 1 50181 50861
BAT31910.1 AP012530_p23 hypothetical protein phrog_2602 unknown function unknown function -1 9363 9884
BAT31939.1 AP012530_p53 endolysin phrog_7 endolysin lysis 1 29022 29519
BAT31925.1 AP012530_p38 NinB protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 18672 19118
BAT31905.1 AP012530_p18 single strand binding protein Ea10 phrog_646 unknown function unknown function -1 7492 7860
BAT31926.1 AP012530_p40 NinE protein phrog_288 unknown function unknown function 1 19640 19822
BAT31946.1 AP012530_p60 terminase small subunit phrog_641 terminase small subunit head and packaging 1 32296 32859
BAT31941.1 AP012530_p55 Rz1 protein phrog_3198 Rz-like spanin lysis 1 29721 29900
BAT31963.1 AP012530_p80 tail assembly protein phrog_30 minor tail protein tail 1 49546 50283
BAT31900.1 AP012530_p13 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 5304 5984
BAT31967.1 AP012530_p84 tail fiber protein phrog_366 tail fiber protein tail 1 55331 56644
BAT31890.1 AP012530_p3 lipoprotein phrog_1229 unknown function unknown function -1 1656 2000
BAT31919.1 AP012530_p32 IS66 family transposase phrog_688 transposase integration and excision 1 15086 16624
BAT31929.1 AP012530_p43 DNA-binding protein Roi phrog_63 anti-repressor Ant transcription regulation 1 20936 21658
BAT31936.1 AP012530_p50 hypothetical protein phrog_494 unknown function unknown function 1 28238 28417
BAT31917.1 AP012530_p30 IS66 family element, orf1 phrog_1013 transposase integration and excision 1 14312 14692
BAT31959.1 AP012530_p76 minor tail protein phrog_18 minor tail protein tail 1 47182 47880
BAT31923.1 AP012530_p36 hypothetical protein phrog_1785 unknown function unknown function 1 18253 18468
BAT31937.1 AP012530_p51 hypothetical protein phrog_311 unknown function unknown function 1 28458 28730
BAT31901.1 AP012530_p14 recombination protein Bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 5981 6766
BAT31906.1 AP012530_p19 hypothetical protein phrog_2471 unknown function unknown function -1 8043 8303
BAT31942.1 AP012530_p56 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 30156 30653
BAT31895.1 AP012530_p8 hypothetical protein phrog_250 unknown function unknown function -1 3405 4352
BAT31920.1 AP012530_p33 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16713 17324
BAT31899.1 AP012530_p12 hypothetical protein phrog_1998 unknown function unknown function -1 5125 5313
BAT31902.1 AP012530_p15 host-nuclease inhibitor protein Gam phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 6772 7188
BAT31966.1 AP012530_p83 outer membrane protein Lom precursor phrog_108 Lom outer membrane protein other 1 54667 55266
BAT31954.1 AP012530_p71 major tail subunit phrog_158 major tail protein tail 1 42153 42869
BAT31948.1 AP012530_p63 transposase OrfA protein of insertion sequence IS629 phrog_151 transposase integration and excision -1 34415 34741
BAT31962.1 AP012530_p79 antirepressor protein phrog_245 anti-repressor Ant transcription regulation 1 48488 49492
BAT31960.1 AP012530_p77 hypothetical protein phrog_1287 unknown function unknown function -1 47897 48217
BAT31927.1 AP012530_p41 hypothetical protein phrog_20442 unknown function unknown function 1 19927 20100
BAT31956.1 AP012530_p73 phage tail protein phrog_337 tail protein tail 1 43273 43554
BAT31969.1 AP012530_p86 T3SS secreated effector Ibe phrog_6583 T3SS secreted effector Ibe moron, auxiliary metabolic gene and host takeover 1 57056 57931
BAT31911.1 AP012530_p24 cI repressor protein phrog_4 transcriptional repressor transcription regulation -1 10386 11039
BAT31904.1 AP012530_p17 regulatory protein CIII phrog_550 CIII anti-termination transcription regulation -1 7255 7419
BAT31909.1 AP012530_p22 hypothetical protein phrog_14935 unknown function unknown function 1 9091 9252
BAT31914.1 AP012530_p27 hypothetical protein phrog_1331 unknown function unknown function 1 11842 12003
BAT31949.1 AP012530_p65 phage major head protein/prohead protease phrog_617 major head protein head and packaging 1 35894 37831
BAT31970.1 AP012530_p87 T3SS secreted effector NleG phrog_808 unknown function unknown function -1 58156 58527
BAT31932.1 AP012530_p46 late antiterminator Q protein phrog_943 anti-termination protein Q-like transcription regulation 1 22922 23410
BAT31965.1 AP012530_p82 host specificity protein phrog_31 central tail fiber J tail 1 51121 54600
BAT31953.1 AP012530_p70 hypothetical protein phrog_347 tail terminator connector 1 41750 42094
BAT31921.1 AP012530_p34 hypothetical protein phrog_1785 unknown function unknown function 1 17565 17786
BAT31943.1 AP012530_p57 hypothetical protein phrog_875 unknown function unknown function 1 30650 30907
BAT31907.1 AP012530_p20 anti-termination protein N phrog_271 anti-termination protein N-like transcription regulation -1 8362 8634
BAT31889.1 AP012530_p2 transcriptional regulator, AlpA family phrog_66 excisionase and transcriptional regulator integration and excision -1 1387 1578
BAT31957.1 AP012530_p74 tail length tape measure protein phrog_339 tail length tape measure protein tail 1 43606 46848
BAT31968.1 AP012530_p85 hypothetical protein phrog_576 tail fiber protein tail 1 56646 56915
BAT31924.1 AP012530_p37 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 18479 18715
BAT31888.1 AP012530_p1 integrase phrog_1 integrase integration and excision 1 228 1406
BAT31915.1 AP012530_p28 replication protein O phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 11990 12811
BAT31916.1 AP012530_p29 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 12808 14184
BAT31903.1 AP012530_p16 Kil protein phrog_2461 Kil protein for bacterial septation inhibition other -1 7143 7412
BAT31955.1 AP012530_p72 tail assembly chaperone phrog_344 tail assembly chaperone tail 1 42875 43249
BAT31928.1 AP012530_p42 antirepressor protein phrog_377 anti-repressor Ant transcription regulation 1 20097 20861
BAT31958.1 AP012530_p75 minor tail protein phrog_14 minor tail protein tail 1 46841 47182
BAT31893.1 AP012530_p6 hypothetical protein phrog_3323 unknown function unknown function -1 2757 2891
BAT31952.1 AP012530_p69 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 41307 41753
BAT31950.1 AP012530_p67 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 40624 40950
BAT31947.1 AP012530_p62 transposase OrfB protein of insertion sequence IS629 phrog_157 transposase integration and excision -1 33528 34415
BAT31918.1 AP012530_p31 IS66 family element, orf2 phrog_623 transposase integration and excision 1 14689 15036
BAT31935.1 AP012530_p49 hypothetical protein phrog_143 unknown function unknown function 1 26164 28101
BAT31944.1 AP012530_p58 hypothetical protein phrog_949 unknown function unknown function -1 31370 31597
BAT31934.1 AP012530_p48 shiga toxin 2 subunit B phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 25031 25300
BAT31945.1 AP012530_p59 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31639 32004
BAT31913.1 AP012530_p26 regulatory protein CII phrog_191 CII-like transcriptional activator transcription regulation 1 11513 11809
BAT31891.1 AP012530_p4 hypothetical protein phrog_924 unknown function unknown function -1 2188 2538
BAT31908.1 AP012530_p21 hypothetical protein phrog_3137 unknown function unknown function -1 8612 8794
BAT31930.1 AP012530_p44 NinG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 21658 22263
BAT31951.1 AP012530_p68 head-tail adaptor phrog_25 head closure Hc1 connector 1 40960 41310
BAT31912.1 AP012530_p25 Cro repressor protein phrog_3 transcriptional repressor transcription regulation 1 11156 11371
BAT31938.1 AP012530_p52 holin protein phrog_20 holin lysis 1 28807 29022
BAT31897.1 AP012530_p10 hypothetical protein phrog_303 unknown function unknown function -1 4669 4950
BAT31922.1 AP012530_p35 hypothetical protein phrog_343 unknown function unknown function 1 17788 18120
BAT31898.1 AP012530_p11 hypothetical protein phrog_292 unknown function unknown function -1 4961 5152
BAT31933.1 AP012530_p47 shiga toxin 2 subunit A phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 24060 25019
BAT31961.1 AP012530_p78 hypothetical protein phrog_228 Arc-like repressor transcription regulation 1 48325 48498
BAT31931.1 AP012530_p45 serine/threonine-protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other 1 22260 22931
BAT31896.1 AP012530_p9 TraR/DksA family transcriptional regulator phrog_54 DksA-like zinc-finger protein other -1 4349 4570
BAT31894.1 AP012530_p7 hypothetical protein phrog_631 unknown function unknown function -1 2888 3403