Genomic map of Stx2-converting phage Stx2a_WGPS4 (AP012538)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AP012538
Definition
Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
58538
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
83
%GC
50.92
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BAT32584.1 AP012538_p77 tail assembly protein phrog_30 minor tail protein tail 1 48212 48949
BAT32588.1 AP012538_p81 tail fiber protein phrog_366 tail fiber protein tail 1 53997 55310
BAT32581.1 AP012538_p74 hypothetical protein phrog_1287 unknown function unknown function -1 46563 46883
BAT32528.1 AP012538_p20 hypothetical protein phrog_3137 unknown function unknown function -1 8591 8773
BAT32559.1 AP012538_p51 endolysin phrog_7 endolysin lysis 1 29000 29497
BAT32525.1 AP012538_p17 single strand binding protein Ea10 phrog_646 unknown function unknown function -1 7480 7848
BAT32515.1 AP012538_p7 hypothetical protein phrog_250 unknown function unknown function -1 3405 4352
BAT32533.1 AP012538_p25 repressor phrog_191 CII-like transcriptional activator transcription regulation 1 11492 11788
BAT32592.1 AP012538_p85 hypothetical protein phrog_14889 unknown function unknown function -1 57457 57657
BAT32582.1 AP012538_p75 hypothetical protein phrog_228 Arc-like repressor transcription regulation 1 46991 47164
BAT32586.1 AP012538_p79 host specificity protein phrog_31 central tail fiber J tail 1 49787 53266
BAT32545.1 AP012538_p37 antirepressor protein phrog_377 anti-repressor Ant transcription regulation 1 17625 18389
BAT32544.1 AP012538_p36 hypothetical protein phrog_20442 unknown function unknown function 1 17455 17628
BAT32580.1 AP012538_p73 minor tail protein phrog_18 minor tail protein tail 1 45848 46546
BAT32558.1 AP012538_p50 holin protein phrog_20 holin lysis 1 28785 29000
BAT32577.1 AP012538_p70 phage tail protein phrog_337 tail protein tail 1 41939 42220
BAT32575.1 AP012538_p68 major tail subunit phrog_158 major tail protein tail 1 40690 41535
BAT32557.1 AP012538_p49 hypothetical protein phrog_311 unknown function unknown function 1 28436 28708
BAT32576.1 AP012538_p69 tail assembly chaperone phrog_344 tail assembly chaperone tail 1 41541 41915
BAT32563.1 AP012538_p55 hypothetical protein phrog_875 unknown function unknown function 1 30628 30885
BAT32529.1 AP012538_p21 hypothetical protein phrog_14935 unknown function unknown function 1 9070 9231
BAT32546.1 AP012538_p38 Roi protein phrog_63 anti-repressor Ant transcription regulation 1 18464 19186
BAT32516.1 AP012538_p8 C4-type zinc finger protein phrog_54 DksA-like zinc-finger protein other -1 4349 4570
BAT32585.1 AP012538_p78 tail assembly protein phrog_32 tail assembly protein tail 1 48847 49527
BAT32572.1 AP012538_p65 head-tail adaptor phrog_25 head closure Hc1 connector 1 39626 39976
BAT32549.1 AP012538_p41 late antiterminator phrog_943 anti-termination protein Q-like transcription regulation 1 20450 20938
BAT32536.1 AP012538_p28 DnaB analogue phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 12787 14163
BAT32523.1 AP012538_p15 Kil protein phrog_2461 Kil protein for bacterial septation inhibition other -1 7131 7400
BAT32530.1 AP012538_p22 hypothetical protein phrog_2602 unknown function unknown function -1 9342 9863
BAT32579.1 AP012538_p72 minor tail protein phrog_14 minor tail protein tail 1 45507 45848
BAT32551.1 AP012538_p43 shiga toxin 2 subunit B phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 22559 22828
BAT32513.1 AP012538_p4 hypothetical protein phrog_924 unknown function unknown function -1 2188 2538
BAT32567.1 AP012538_p59 large terminase subunit phrog_7622 terminase large subunit head and packaging 1 32834 33508
BAT32534.1 AP012538_p26 hypothetical protein phrog_1331 unknown function unknown function 1 11821 11982
BAT32522.1 AP012538_p14 host-nuclease inhibitor protein Gam phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 6760 7176
BAT32542.1 AP012538_p34 DNA methylase phrog_111 DNA methyltransferase other 1 16644 17171
BAT32543.1 AP012538_p35 NinE protein phrog_288 unknown function unknown function 1 17168 17350
BAT32512.1 AP012538_p3 hypothetical protein phrog_1229 unknown function unknown function -1 1656 2000
BAT32562.1 AP012538_p54 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 30134 30631
BAT32568.1 AP012538_p60 terminase large subunit phrog_2699 terminase large subunit head and packaging 1 33480 34496
BAT32511.1 AP012538_p2 AlpA family transcriptional regulator phrog_66 excisionase and transcriptional regulator integration and excision -1 1387 1578
BAT32589.1 AP012538_p82 hypothetical protein phrog_576 tail fiber protein tail 1 55312 55581
BAT32565.1 AP012538_p57 Dnase phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31617 31982
BAT32552.1 AP012538_p44 hypothetical protein of ISEc8 phrog_688 transposase integration and excision -1 23572 25110
BAT32590.1 AP012538_p83 hypothetical protein phrog_6583 T3SS secreted effector Ibe moron, auxiliary metabolic gene and host takeover 1 55722 56597
BAT32537.1 AP012538_p29 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14242 14853
BAT32539.1 AP012538_p31 hypothetical protein phrog_343 unknown function unknown function 1 15317 15649
BAT32570.1 AP012538_p62 hypothetical protein phrog_26251 unknown function unknown function 1 36573 36758
BAT32591.1 AP012538_p84 T3SS secreted effector NleG phrog_808 unknown function unknown function -1 56822 57193
BAT32532.1 AP012538_p24 regulatory protein phrog_3 transcriptional repressor transcription regulation 1 11135 11350
BAT32547.1 AP012538_p39 hypothetical protein NinG phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 19186 19791
BAT32574.1 AP012538_p67 hypothetical protein phrog_347 tail terminator connector 1 40416 40760
BAT32518.1 AP012538_p10 hypothetical protein phrog_292 unknown function unknown function -1 4961 5152
BAT32555.1 AP012538_p47 hypothetical protein phrog_143 unknown function unknown function 1 26142 28079
BAT32520.1 AP012538_p12 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 5304 5972
BAT32578.1 AP012538_p71 tail length tape measure protein phrog_339 tail length tape measure protein tail 1 42272 45514
BAT32564.1 AP012538_p56 hypothetical protein phrog_949 unknown function unknown function -1 31348 31575
BAT32554.1 AP012538_p46 hypothetical protein of ISEc8 phrog_1013 transposase integration and excision -1 25504 25884
BAT32510.1 AP012538_p1 integrase phrog_1 integrase integration and excision 1 228 1406
BAT32541.1 AP012538_p33 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 16201 16647
BAT32531.1 AP012538_p23 repressor phrog_4 transcriptional repressor transcription regulation -1 10365 11018
BAT32571.1 AP012538_p64 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 39290 39616
BAT32538.1 AP012538_p30 hypothetical protein phrog_1785 unknown function unknown function 1 15100 15315
BAT32566.1 AP012538_p58 terminase small subunit phrog_641 terminase small subunit head and packaging 1 32274 32837
BAT32535.1 AP012538_p27 replication protein phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 11969 12790
BAT32517.1 AP012538_p9 hypothetical protein phrog_303 unknown function unknown function -1 4669 4950
BAT32527.1 AP012538_p19 anti-termination protein N phrog_271 anti-termination protein N-like transcription regulation -1 8341 8613
BAT32550.1 AP012538_p42 shiga toxin 2 subunit A phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 21588 22547
BAT32573.1 AP012538_p66 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 39973 40419
BAT32587.1 AP012538_p80 outer membrane protein phrog_108 Lom outer membrane protein other 1 53333 53932
BAT32540.1 AP012538_p32 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 15819 16244
BAT32556.1 AP012538_p48 hypothetical protein phrog_494 unknown function unknown function 1 28216 28395
BAT32569.1 AP012538_p61 major head protein/prohead protease phrog_617 major head protein head and packaging 1 34560 36497
BAT32548.1 AP012538_p40 hypothetical protein phrog_246 NinI-like serine-threonine phosphatase other 1 19788 20459
BAT32526.1 AP012538_p18 hypothetical protein phrog_2471 unknown function unknown function -1 8031 8282
BAT32560.1 AP012538_p52 Rz lysis protein phrog_13 Rz-like spanin lysis 1 29494 29931
BAT32524.1 AP012538_p16 regulatory protein CIII phrog_550 CIII anti-termination transcription regulation -1 7243 7407
BAT32519.1 AP012538_p11 hypothetical protein phrog_1998 unknown function unknown function -1 5125 5307
BAT32514.1 AP012538_p6 hypothetical protein phrog_631 unknown function unknown function -1 2888 3403
BAT32521.1 AP012538_p13 recombination protein Bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 5969 6754
BAT32561.1 AP012538_p53 Rz1 protein phrog_3198 Rz-like spanin lysis 1 29693 29878
BAT32553.1 AP012538_p45 hypothetical protein of ISEc8 phrog_623 transposase integration and excision -1 25160 25507
BAT32583.1 AP012538_p76 antirepressor protein phrog_245 anti-repressor Ant transcription regulation 1 47154 48158