| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
AP012538 |
Definition |
Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
58538 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
50.92 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| BAT32584.1 | AP012538_p77 | tail assembly protein | phrog_30 | minor tail protein | tail | 1 | 48212 | 48949 |
| BAT32588.1 | AP012538_p81 | tail fiber protein | phrog_366 | tail fiber protein | tail | 1 | 53997 | 55310 |
| BAT32581.1 | AP012538_p74 | hypothetical protein | phrog_1287 | unknown function | unknown function | -1 | 46563 | 46883 |
| BAT32528.1 | AP012538_p20 | hypothetical protein | phrog_3137 | unknown function | unknown function | -1 | 8591 | 8773 |
| BAT32559.1 | AP012538_p51 | endolysin | phrog_7 | endolysin | lysis | 1 | 29000 | 29497 |
| BAT32525.1 | AP012538_p17 | single strand binding protein Ea10 | phrog_646 | unknown function | unknown function | -1 | 7480 | 7848 |
| BAT32515.1 | AP012538_p7 | hypothetical protein | phrog_250 | unknown function | unknown function | -1 | 3405 | 4352 |
| BAT32533.1 | AP012538_p25 | repressor | phrog_191 | CII-like transcriptional activator | transcription regulation | 1 | 11492 | 11788 |
| BAT32592.1 | AP012538_p85 | hypothetical protein | phrog_14889 | unknown function | unknown function | -1 | 57457 | 57657 |
| BAT32582.1 | AP012538_p75 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | 1 | 46991 | 47164 |
| BAT32586.1 | AP012538_p79 | host specificity protein | phrog_31 | central tail fiber J | tail | 1 | 49787 | 53266 |
| BAT32545.1 | AP012538_p37 | antirepressor protein | phrog_377 | anti-repressor Ant | transcription regulation | 1 | 17625 | 18389 |
| BAT32544.1 | AP012538_p36 | hypothetical protein | phrog_20442 | unknown function | unknown function | 1 | 17455 | 17628 |
| BAT32580.1 | AP012538_p73 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 45848 | 46546 |
| BAT32558.1 | AP012538_p50 | holin protein | phrog_20 | holin | lysis | 1 | 28785 | 29000 |
| BAT32577.1 | AP012538_p70 | phage tail protein | phrog_337 | tail protein | tail | 1 | 41939 | 42220 |
| BAT32575.1 | AP012538_p68 | major tail subunit | phrog_158 | major tail protein | tail | 1 | 40690 | 41535 |
| BAT32557.1 | AP012538_p49 | hypothetical protein | phrog_311 | unknown function | unknown function | 1 | 28436 | 28708 |
| BAT32576.1 | AP012538_p69 | tail assembly chaperone | phrog_344 | tail assembly chaperone | tail | 1 | 41541 | 41915 |
| BAT32563.1 | AP012538_p55 | hypothetical protein | phrog_875 | unknown function | unknown function | 1 | 30628 | 30885 |
| BAT32529.1 | AP012538_p21 | hypothetical protein | phrog_14935 | unknown function | unknown function | 1 | 9070 | 9231 |
| BAT32546.1 | AP012538_p38 | Roi protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 18464 | 19186 |
| BAT32516.1 | AP012538_p8 | C4-type zinc finger protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 4349 | 4570 |
| BAT32585.1 | AP012538_p78 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 48847 | 49527 |
| BAT32572.1 | AP012538_p65 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 39626 | 39976 |
| BAT32549.1 | AP012538_p41 | late antiterminator | phrog_943 | anti-termination protein Q-like | transcription regulation | 1 | 20450 | 20938 |
| BAT32536.1 | AP012538_p28 | DnaB analogue | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 12787 | 14163 |
| BAT32523.1 | AP012538_p15 | Kil protein | phrog_2461 | Kil protein for bacterial septation inhibition | other | -1 | 7131 | 7400 |
| BAT32530.1 | AP012538_p22 | hypothetical protein | phrog_2602 | unknown function | unknown function | -1 | 9342 | 9863 |
| BAT32579.1 | AP012538_p72 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 45507 | 45848 |
| BAT32551.1 | AP012538_p43 | shiga toxin 2 subunit B | phrog_851 | Shiga toxin subunit B | moron, auxiliary metabolic gene and host takeover | 1 | 22559 | 22828 |
| BAT32513.1 | AP012538_p4 | hypothetical protein | phrog_924 | unknown function | unknown function | -1 | 2188 | 2538 |
| BAT32567.1 | AP012538_p59 | large terminase subunit | phrog_7622 | terminase large subunit | head and packaging | 1 | 32834 | 33508 |
| BAT32534.1 | AP012538_p26 | hypothetical protein | phrog_1331 | unknown function | unknown function | 1 | 11821 | 11982 |
| BAT32522.1 | AP012538_p14 | host-nuclease inhibitor protein Gam | phrog_259 | gam-like host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 6760 | 7176 |
| BAT32542.1 | AP012538_p34 | DNA methylase | phrog_111 | DNA methyltransferase | other | 1 | 16644 | 17171 |
| BAT32543.1 | AP012538_p35 | NinE protein | phrog_288 | unknown function | unknown function | 1 | 17168 | 17350 |
| BAT32512.1 | AP012538_p3 | hypothetical protein | phrog_1229 | unknown function | unknown function | -1 | 1656 | 2000 |
| BAT32562.1 | AP012538_p54 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 30134 | 30631 |
| BAT32568.1 | AP012538_p60 | terminase large subunit | phrog_2699 | terminase large subunit | head and packaging | 1 | 33480 | 34496 |
| BAT32511.1 | AP012538_p2 | AlpA family transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 1387 | 1578 |
| BAT32589.1 | AP012538_p82 | hypothetical protein | phrog_576 | tail fiber protein | tail | 1 | 55312 | 55581 |
| BAT32565.1 | AP012538_p57 | Dnase | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31617 | 31982 |
| BAT32552.1 | AP012538_p44 | hypothetical protein of ISEc8 | phrog_688 | transposase | integration and excision | -1 | 23572 | 25110 |
| BAT32590.1 | AP012538_p83 | hypothetical protein | phrog_6583 | T3SS secreted effector Ibe | moron, auxiliary metabolic gene and host takeover | 1 | 55722 | 56597 |
| BAT32537.1 | AP012538_p29 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14242 | 14853 |
| BAT32539.1 | AP012538_p31 | hypothetical protein | phrog_343 | unknown function | unknown function | 1 | 15317 | 15649 |
| BAT32570.1 | AP012538_p62 | hypothetical protein | phrog_26251 | unknown function | unknown function | 1 | 36573 | 36758 |
| BAT32591.1 | AP012538_p84 | T3SS secreted effector NleG | phrog_808 | unknown function | unknown function | -1 | 56822 | 57193 |
| BAT32532.1 | AP012538_p24 | regulatory protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 11135 | 11350 |
| BAT32547.1 | AP012538_p39 | hypothetical protein NinG | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19186 | 19791 |
| BAT32574.1 | AP012538_p67 | hypothetical protein | phrog_347 | tail terminator | connector | 1 | 40416 | 40760 |
| BAT32518.1 | AP012538_p10 | hypothetical protein | phrog_292 | unknown function | unknown function | -1 | 4961 | 5152 |
| BAT32555.1 | AP012538_p47 | hypothetical protein | phrog_143 | unknown function | unknown function | 1 | 26142 | 28079 |
| BAT32520.1 | AP012538_p12 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 5304 | 5972 |
| BAT32578.1 | AP012538_p71 | tail length tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 42272 | 45514 |
| BAT32564.1 | AP012538_p56 | hypothetical protein | phrog_949 | unknown function | unknown function | -1 | 31348 | 31575 |
| BAT32554.1 | AP012538_p46 | hypothetical protein of ISEc8 | phrog_1013 | transposase | integration and excision | -1 | 25504 | 25884 |
| BAT32510.1 | AP012538_p1 | integrase | phrog_1 | integrase | integration and excision | 1 | 228 | 1406 |
| BAT32541.1 | AP012538_p33 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 16201 | 16647 |
| BAT32531.1 | AP012538_p23 | repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 10365 | 11018 |
| BAT32571.1 | AP012538_p64 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 39290 | 39616 |
| BAT32538.1 | AP012538_p30 | hypothetical protein | phrog_1785 | unknown function | unknown function | 1 | 15100 | 15315 |
| BAT32566.1 | AP012538_p58 | terminase small subunit | phrog_641 | terminase small subunit | head and packaging | 1 | 32274 | 32837 |
| BAT32535.1 | AP012538_p27 | replication protein | phrog_345 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 11969 | 12790 |
| BAT32517.1 | AP012538_p9 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 4669 | 4950 |
| BAT32527.1 | AP012538_p19 | anti-termination protein N | phrog_271 | anti-termination protein N-like | transcription regulation | -1 | 8341 | 8613 |
| BAT32550.1 | AP012538_p42 | shiga toxin 2 subunit A | phrog_866 | Shiga toxin subunit A | moron, auxiliary metabolic gene and host takeover | 1 | 21588 | 22547 |
| BAT32573.1 | AP012538_p66 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 39973 | 40419 |
| BAT32587.1 | AP012538_p80 | outer membrane protein | phrog_108 | Lom outer membrane protein | other | 1 | 53333 | 53932 |
| BAT32540.1 | AP012538_p32 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 15819 | 16244 |
| BAT32556.1 | AP012538_p48 | hypothetical protein | phrog_494 | unknown function | unknown function | 1 | 28216 | 28395 |
| BAT32569.1 | AP012538_p61 | major head protein/prohead protease | phrog_617 | major head protein | head and packaging | 1 | 34560 | 36497 |
| BAT32548.1 | AP012538_p40 | hypothetical protein | phrog_246 | NinI-like serine-threonine phosphatase | other | 1 | 19788 | 20459 |
| BAT32526.1 | AP012538_p18 | hypothetical protein | phrog_2471 | unknown function | unknown function | -1 | 8031 | 8282 |
| BAT32560.1 | AP012538_p52 | Rz lysis protein | phrog_13 | Rz-like spanin | lysis | 1 | 29494 | 29931 |
| BAT32524.1 | AP012538_p16 | regulatory protein CIII | phrog_550 | CIII anti-termination | transcription regulation | -1 | 7243 | 7407 |
| BAT32519.1 | AP012538_p11 | hypothetical protein | phrog_1998 | unknown function | unknown function | -1 | 5125 | 5307 |
| BAT32514.1 | AP012538_p6 | hypothetical protein | phrog_631 | unknown function | unknown function | -1 | 2888 | 3403 |
| BAT32521.1 | AP012538_p13 | recombination protein Bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 5969 | 6754 |
| BAT32561.1 | AP012538_p53 | Rz1 protein | phrog_3198 | Rz-like spanin | lysis | 1 | 29693 | 29878 |
| BAT32553.1 | AP012538_p45 | hypothetical protein of ISEc8 | phrog_623 | transposase | integration and excision | -1 | 25160 | 25507 |
| BAT32583.1 | AP012538_p76 | antirepressor protein | phrog_245 | anti-repressor Ant | transcription regulation | 1 | 47154 | 48158 |