Genomic map of Stx2-converting phage Stx2a_WGPS8 (AP012540)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AP012540
Definition
Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
55023
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
78
%GC
51.02
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BAT32681.1 AP012540_p11 hypothetical protein phrog_1998 unknown function unknown function -1 5129 5317
BAT32680.1 AP012540_p10 hypothetical protein phrog_292 unknown function unknown function -1 4965 5156
BAT32676.1 AP012540_p6 hypothetical protein phrog_631 unknown function unknown function -1 2892 3407
BAT32737.1 AP012540_p69 hypothetical protein phrog_1287 unknown function unknown function -1 43066 43386
BAT32712.1 AP012540_p42 shiga toxin 2 subunit B phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 21510 21779
BAT32692.1 AP012540_p22 hypothetical protein phrog_2602 unknown function unknown function -1 9358 9879
BAT32694.1 AP012540_p24 regulatory protein Cro phrog_3 transcriptional repressor transcription regulation 1 11152 11367
BAT32684.1 AP012540_p14 host-nuclease inhibitor protein Gam phrog_259 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 6776 7192
BAT32708.1 AP012540_p38 NinG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 18533 19138
BAT32731.1 AP012540_p63 major tail subunit phrog_158 major tail protein tail 1 37192 38037
BAT32747.1 AP012540_p79 T3SS secreted effector NleG phrog_808 unknown function unknown function -1 53307 53678
BAT32689.1 AP012540_p19 anti-termination protein N phrog_271 anti-termination protein N-like transcription regulation -1 8357 8629
BAT32675.1 AP012540_p5 hypothetical protein phrog_5117 unknown function unknown function -1 2539 2895
BAT32741.1 AP012540_p73 tail assembly protein phrog_32 tail assembly protein tail 1 45351 46031
BAT32738.1 AP012540_p70 hypothetical protein phrog_228 Arc-like repressor transcription regulation 1 43494 43667
BAT32721.1 AP012540_p52 hypothetical protein phrog_949 unknown function unknown function -1 27849 28076
BAT32671.1 AP012540_p1 integrase phrog_1 integrase integration and excision 1 228 1406
BAT32700.1 AP012540_p30 hypothetical protein phrog_599 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 14699 15124
BAT32698.1 AP012540_p28 DnaB analogue phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 12804 14180
BAT32718.1 AP012540_p49 Rz1 protein phrog_3198 Rz-like spanin lysis 1 26194 26379
BAT32725.1 AP012540_p56 major head protein/prohead protease phrog_617 major head protein head and packaging 1 31062 32999
BAT32736.1 AP012540_p68 minor tail protein phrog_18 minor tail protein tail 1 42351 43049
BAT32706.1 AP012540_p36 hypothetical protein phrog_672 unknown function unknown function 1 17609 17818
BAT32695.1 AP012540_p25 regulatory protein CII phrog_191 CII-like transcriptional activator transcription regulation 1 11509 11805
BAT32719.1 AP012540_p50 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 26635 27132
BAT32727.1 AP012540_p59 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 35792 36118
BAT32705.1 AP012540_p35 hypothetical protein phrog_1511 unknown function unknown function 1 17248 17649
BAT32696.1 AP012540_p26 hypothetical protein phrog_1331 unknown function unknown function 1 11838 11999
BAT32707.1 AP012540_p37 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation 1 17811 18533
BAT32690.1 AP012540_p20 hypothetical protein phrog_3137 unknown function unknown function -1 8607 8789
BAT32678.1 AP012540_p8 C4-type zinc finger protein phrog_54 DksA-like zinc-finger protein other -1 4353 4574
BAT32726.1 AP012540_p57 hypothetical protein phrog_26251 unknown function unknown function 1 33075 33260
BAT32732.1 AP012540_p64 tail assembly chaperone phrog_344 tail assembly chaperone tail 1 38043 38417
BAT32728.1 AP012540_p60 head-tail adaptor phrog_25 head closure Hc1 connector 1 36128 36478
BAT32717.1 AP012540_p48 Rz lysis protein phrog_13 Rz-like spanin lysis 1 25995 26432
BAT32740.1 AP012540_p72 tail assembly protein phrog_30 minor tail protein tail 1 44716 45453
BAT32672.1 AP012540_p2 transcriptional regulator, AlpA family phrog_66 excisionase and transcriptional regulator integration and excision -1 1387 1578
BAT32714.1 AP012540_p45 hypothetical protein phrog_311 unknown function unknown function 1 24937 25209
BAT32735.1 AP012540_p67 minor tail protein phrog_14 minor tail protein tail 1 42010 42351
BAT32739.1 AP012540_p71 antirepressor protein phrog_245 anti-repressor Ant transcription regulation 1 43657 44661
BAT32703.1 AP012540_p33 NinE protein phrog_288 unknown function unknown function 1 16048 16242
BAT32704.1 AP012540_p34 antirepressor protein phrog_377 anti-repressor Ant transcription regulation 1 16499 17173
BAT32711.1 AP012540_p41 shiga toxin 2 subunit A phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 20539 21498
BAT32687.1 AP012540_p17 single strand binding protein Ea10 phrog_646 unknown function unknown function -1 7496 7864
BAT32746.1 AP012540_p78 T3SS secreted effector Ibe phrog_6583 T3SS secreted effector Ibe moron, auxiliary metabolic gene and host takeover 1 52207 53082
BAT32715.1 AP012540_p46 holin protein phrog_20 holin lysis 1 25286 25501
BAT32693.1 AP012540_p23 cI repressor protein phrog_4 transcriptional repressor transcription regulation -1 10381 11034
BAT32688.1 AP012540_p18 hypothetical protein phrog_2471 unknown function unknown function -1 8047 8298
BAT32734.1 AP012540_p66 tail length tape measure protein phrog_339 tail length tape measure protein tail 1 38775 42017
BAT32748.1 AP012540_p80 hypothetical protein phrog_14889 unknown function unknown function -1 53942 54142
BAT32742.1 AP012540_p74 host specificity protein phrog_31 central tail fiber J tail 1 46270 49752
BAT32674.1 AP012540_p4 hypothetical protein phrog_924 unknown function unknown function -1 2192 2542
BAT32723.1 AP012540_p54 terminase small subunit phrog_641 terminase small subunit head and packaging 1 28777 29340
BAT32743.1 AP012540_p75 outer membrane protein phrog_108 Lom outer membrane protein other 1 49819 50418
BAT32702.1 AP012540_p32 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 15524 16051
BAT32697.1 AP012540_p27 replication protein O phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 11986 12807
BAT32720.1 AP012540_p51 hypothetical protein phrog_875 unknown function unknown function 1 27129 27386
BAT32729.1 AP012540_p61 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 36475 36921
BAT32722.1 AP012540_p53 Dnase phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism 1 28118 28483
BAT32701.1 AP012540_p31 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 15081 15527
BAT32745.1 AP012540_p77 hypothetical protein phrog_576 tail fiber protein tail 1 51798 52067
BAT32744.1 AP012540_p76 tail fiber protein phrog_366 tail fiber protein tail 1 50477 51796
BAT32686.1 AP012540_p16 regulatory protein CIII phrog_550 CIII anti-termination transcription regulation -1 7259 7423
BAT32724.1 AP012540_p55 large terminase subunit phrog_9 terminase large subunit head and packaging 1 29337 30998
BAT32733.1 AP012540_p65 phage tail protein phrog_337 tail protein tail 1 38441 38722
BAT32699.1 AP012540_p29 hypothetical protein phrog_343 unknown function unknown function 1 14251 14529
BAT32679.1 AP012540_p9 hypothetical protein phrog_303 unknown function unknown function -1 4673 4954
BAT32691.1 AP012540_p21 hypothetical protein phrog_14935 unknown function unknown function 1 9086 9247
BAT32685.1 AP012540_p15 Kil protein phrog_2461 Kil protein for bacterial septation inhibition other -1 7147 7416
BAT32682.1 AP012540_p12 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 5308 5988
BAT32673.1 AP012540_p3 hypothetical protein phrog_1229 unknown function unknown function -1 1660 2004
BAT32716.1 AP012540_p47 endolysin phrog_7 endolysin lysis 1 25501 25998
BAT32710.1 AP012540_p40 antitermination protein Q phrog_79 anti-termination protein Q-like transcription regulation 1 19322 19756
BAT32709.1 AP012540_p39 hypothetical protein phrog_268 unknown function unknown function 1 19135 19329
BAT32730.1 AP012540_p62 hypothetical protein phrog_347 tail terminator connector 1 36918 37262
BAT32713.1 AP012540_p44 hypothetical protein phrog_494 unknown function unknown function 1 24717 24896
BAT32683.1 AP012540_p13 recombination protein Bet phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 5985 6770
BAT32677.1 AP012540_p7 hypothetical protein phrog_250 unknown function unknown function -1 3409 4356