| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
AP012540 |
Definition |
Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
55023 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
51.02 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| BAT32681.1 | AP012540_p11 | hypothetical protein | phrog_1998 | unknown function | unknown function | -1 | 5129 | 5317 |
| BAT32680.1 | AP012540_p10 | hypothetical protein | phrog_292 | unknown function | unknown function | -1 | 4965 | 5156 |
| BAT32676.1 | AP012540_p6 | hypothetical protein | phrog_631 | unknown function | unknown function | -1 | 2892 | 3407 |
| BAT32737.1 | AP012540_p69 | hypothetical protein | phrog_1287 | unknown function | unknown function | -1 | 43066 | 43386 |
| BAT32712.1 | AP012540_p42 | shiga toxin 2 subunit B | phrog_851 | Shiga toxin subunit B | moron, auxiliary metabolic gene and host takeover | 1 | 21510 | 21779 |
| BAT32692.1 | AP012540_p22 | hypothetical protein | phrog_2602 | unknown function | unknown function | -1 | 9358 | 9879 |
| BAT32694.1 | AP012540_p24 | regulatory protein Cro | phrog_3 | transcriptional repressor | transcription regulation | 1 | 11152 | 11367 |
| BAT32684.1 | AP012540_p14 | host-nuclease inhibitor protein Gam | phrog_259 | gam-like host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 6776 | 7192 |
| BAT32708.1 | AP012540_p38 | NinG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18533 | 19138 |
| BAT32731.1 | AP012540_p63 | major tail subunit | phrog_158 | major tail protein | tail | 1 | 37192 | 38037 |
| BAT32747.1 | AP012540_p79 | T3SS secreted effector NleG | phrog_808 | unknown function | unknown function | -1 | 53307 | 53678 |
| BAT32689.1 | AP012540_p19 | anti-termination protein N | phrog_271 | anti-termination protein N-like | transcription regulation | -1 | 8357 | 8629 |
| BAT32675.1 | AP012540_p5 | hypothetical protein | phrog_5117 | unknown function | unknown function | -1 | 2539 | 2895 |
| BAT32741.1 | AP012540_p73 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 45351 | 46031 |
| BAT32738.1 | AP012540_p70 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | 1 | 43494 | 43667 |
| BAT32721.1 | AP012540_p52 | hypothetical protein | phrog_949 | unknown function | unknown function | -1 | 27849 | 28076 |
| BAT32671.1 | AP012540_p1 | integrase | phrog_1 | integrase | integration and excision | 1 | 228 | 1406 |
| BAT32700.1 | AP012540_p30 | hypothetical protein | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 14699 | 15124 |
| BAT32698.1 | AP012540_p28 | DnaB analogue | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 12804 | 14180 |
| BAT32718.1 | AP012540_p49 | Rz1 protein | phrog_3198 | Rz-like spanin | lysis | 1 | 26194 | 26379 |
| BAT32725.1 | AP012540_p56 | major head protein/prohead protease | phrog_617 | major head protein | head and packaging | 1 | 31062 | 32999 |
| BAT32736.1 | AP012540_p68 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 42351 | 43049 |
| BAT32706.1 | AP012540_p36 | hypothetical protein | phrog_672 | unknown function | unknown function | 1 | 17609 | 17818 |
| BAT32695.1 | AP012540_p25 | regulatory protein CII | phrog_191 | CII-like transcriptional activator | transcription regulation | 1 | 11509 | 11805 |
| BAT32719.1 | AP012540_p50 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 26635 | 27132 |
| BAT32727.1 | AP012540_p59 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 35792 | 36118 |
| BAT32705.1 | AP012540_p35 | hypothetical protein | phrog_1511 | unknown function | unknown function | 1 | 17248 | 17649 |
| BAT32696.1 | AP012540_p26 | hypothetical protein | phrog_1331 | unknown function | unknown function | 1 | 11838 | 11999 |
| BAT32707.1 | AP012540_p37 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 17811 | 18533 |
| BAT32690.1 | AP012540_p20 | hypothetical protein | phrog_3137 | unknown function | unknown function | -1 | 8607 | 8789 |
| BAT32678.1 | AP012540_p8 | C4-type zinc finger protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 4353 | 4574 |
| BAT32726.1 | AP012540_p57 | hypothetical protein | phrog_26251 | unknown function | unknown function | 1 | 33075 | 33260 |
| BAT32732.1 | AP012540_p64 | tail assembly chaperone | phrog_344 | tail assembly chaperone | tail | 1 | 38043 | 38417 |
| BAT32728.1 | AP012540_p60 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 36128 | 36478 |
| BAT32717.1 | AP012540_p48 | Rz lysis protein | phrog_13 | Rz-like spanin | lysis | 1 | 25995 | 26432 |
| BAT32740.1 | AP012540_p72 | tail assembly protein | phrog_30 | minor tail protein | tail | 1 | 44716 | 45453 |
| BAT32672.1 | AP012540_p2 | transcriptional regulator, AlpA family | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 1387 | 1578 |
| BAT32714.1 | AP012540_p45 | hypothetical protein | phrog_311 | unknown function | unknown function | 1 | 24937 | 25209 |
| BAT32735.1 | AP012540_p67 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 42010 | 42351 |
| BAT32739.1 | AP012540_p71 | antirepressor protein | phrog_245 | anti-repressor Ant | transcription regulation | 1 | 43657 | 44661 |
| BAT32703.1 | AP012540_p33 | NinE protein | phrog_288 | unknown function | unknown function | 1 | 16048 | 16242 |
| BAT32704.1 | AP012540_p34 | antirepressor protein | phrog_377 | anti-repressor Ant | transcription regulation | 1 | 16499 | 17173 |
| BAT32711.1 | AP012540_p41 | shiga toxin 2 subunit A | phrog_866 | Shiga toxin subunit A | moron, auxiliary metabolic gene and host takeover | 1 | 20539 | 21498 |
| BAT32687.1 | AP012540_p17 | single strand binding protein Ea10 | phrog_646 | unknown function | unknown function | -1 | 7496 | 7864 |
| BAT32746.1 | AP012540_p78 | T3SS secreted effector Ibe | phrog_6583 | T3SS secreted effector Ibe | moron, auxiliary metabolic gene and host takeover | 1 | 52207 | 53082 |
| BAT32715.1 | AP012540_p46 | holin protein | phrog_20 | holin | lysis | 1 | 25286 | 25501 |
| BAT32693.1 | AP012540_p23 | cI repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 10381 | 11034 |
| BAT32688.1 | AP012540_p18 | hypothetical protein | phrog_2471 | unknown function | unknown function | -1 | 8047 | 8298 |
| BAT32734.1 | AP012540_p66 | tail length tape measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 38775 | 42017 |
| BAT32748.1 | AP012540_p80 | hypothetical protein | phrog_14889 | unknown function | unknown function | -1 | 53942 | 54142 |
| BAT32742.1 | AP012540_p74 | host specificity protein | phrog_31 | central tail fiber J | tail | 1 | 46270 | 49752 |
| BAT32674.1 | AP012540_p4 | hypothetical protein | phrog_924 | unknown function | unknown function | -1 | 2192 | 2542 |
| BAT32723.1 | AP012540_p54 | terminase small subunit | phrog_641 | terminase small subunit | head and packaging | 1 | 28777 | 29340 |
| BAT32743.1 | AP012540_p75 | outer membrane protein | phrog_108 | Lom outer membrane protein | other | 1 | 49819 | 50418 |
| BAT32702.1 | AP012540_p32 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 15524 | 16051 |
| BAT32697.1 | AP012540_p27 | replication protein O | phrog_345 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 11986 | 12807 |
| BAT32720.1 | AP012540_p51 | hypothetical protein | phrog_875 | unknown function | unknown function | 1 | 27129 | 27386 |
| BAT32729.1 | AP012540_p61 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 36475 | 36921 |
| BAT32722.1 | AP012540_p53 | Dnase | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28118 | 28483 |
| BAT32701.1 | AP012540_p31 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 15081 | 15527 |
| BAT32745.1 | AP012540_p77 | hypothetical protein | phrog_576 | tail fiber protein | tail | 1 | 51798 | 52067 |
| BAT32744.1 | AP012540_p76 | tail fiber protein | phrog_366 | tail fiber protein | tail | 1 | 50477 | 51796 |
| BAT32686.1 | AP012540_p16 | regulatory protein CIII | phrog_550 | CIII anti-termination | transcription regulation | -1 | 7259 | 7423 |
| BAT32724.1 | AP012540_p55 | large terminase subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 29337 | 30998 |
| BAT32733.1 | AP012540_p65 | phage tail protein | phrog_337 | tail protein | tail | 1 | 38441 | 38722 |
| BAT32699.1 | AP012540_p29 | hypothetical protein | phrog_343 | unknown function | unknown function | 1 | 14251 | 14529 |
| BAT32679.1 | AP012540_p9 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 4673 | 4954 |
| BAT32691.1 | AP012540_p21 | hypothetical protein | phrog_14935 | unknown function | unknown function | 1 | 9086 | 9247 |
| BAT32685.1 | AP012540_p15 | Kil protein | phrog_2461 | Kil protein for bacterial septation inhibition | other | -1 | 7147 | 7416 |
| BAT32682.1 | AP012540_p12 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 5308 | 5988 |
| BAT32673.1 | AP012540_p3 | hypothetical protein | phrog_1229 | unknown function | unknown function | -1 | 1660 | 2004 |
| BAT32716.1 | AP012540_p47 | endolysin | phrog_7 | endolysin | lysis | 1 | 25501 | 25998 |
| BAT32710.1 | AP012540_p40 | antitermination protein Q | phrog_79 | anti-termination protein Q-like | transcription regulation | 1 | 19322 | 19756 |
| BAT32709.1 | AP012540_p39 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 19135 | 19329 |
| BAT32730.1 | AP012540_p62 | hypothetical protein | phrog_347 | tail terminator | connector | 1 | 36918 | 37262 |
| BAT32713.1 | AP012540_p44 | hypothetical protein | phrog_494 | unknown function | unknown function | 1 | 24717 | 24896 |
| BAT32683.1 | AP012540_p13 | recombination protein Bet | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 5985 | 6770 |
| BAT32677.1 | AP012540_p7 | hypothetical protein | phrog_250 | unknown function | unknown function | -1 | 3409 | 4356 |