Genomic map of Lactobacillus phage T25 (AP018361)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AP018361
Definition
Lactobacillus phage T25 DNA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
38421
Host Name
Lactobacillus paracasei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
44.54
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BBD20132.1 AP018361_p17 hypothetical protein phrog_5222 unknown function unknown function -1 10768 10908
BBD20128.1 AP018361_p13 hypothetical protein singleton unknown function unknown function -1 9472 9585
BBD20135.1 AP018361_p20 DNA primase phrog_1829 DNA primase DNA, RNA and nucleotide metabolism -1 11807 14107
BBD20149.1 AP018361_p34 Gp2 phage-like protein singleton unknown function unknown function 1 22775 23353
BBD20142.1 AP018361_p27 hypothetical protein phrog_823 unknown function unknown function -1 17919 18275
BBD20130.1 AP018361_p15 site-specific DNA-methyltransferase phrog_67 DNA methyltransferase other -1 9748 10506
BBD20134.1 AP018361_p19 VRR-NUC domain protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 11181 11513
BBD20164.1 AP018361_p49 phage major capsid protein phrog_15928 major head protein head and packaging -1 37080 37694
BBD20133.1 AP018361_p18 hypothetical protein phrog_6766 unknown function unknown function -1 10905 11090
BBD20137.1 AP018361_p22 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 14908 16284
BBD20153.1 AP018361_p38 hypothetical protein phrog_4573 unknown function unknown function -1 25475 25765
BBD20161.1 AP018361_p46 head-tail connector protein phrog_5 tail completion or Neck1 protein connector -1 35944 36363
BBD20158.1 AP018361_p43 tail component phrog_1346 tail protein tail -1 34425 34889
BBD20156.1 AP018361_p41 tail protein phrog_167 tail length tape measure protein tail -1 30111 34220
BBD20139.1 AP018361_p24 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism -1 16970 17455
BBD20157.1 AP018361_p42 hypothetical protein phrog_2629 unknown function unknown function -1 34217 34447
BBD20140.1 AP018361_p25 hypothetical protein phrog_5205 unknown function unknown function -1 17474 17677
BBD20165.1 AP018361_p50 tail component singleton unknown function unknown function 1 37901 38074
BBD20122.1 AP018361_p7 phage endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism -1 5769 6212
BBD20144.1 AP018361_p29 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 19170 19409
BBD20159.1 AP018361_p44 phage tail protein phrog_88 major tail protein tail -1 34932 35564
BBD20120.1 AP018361_p5 terminase large subunit phrog_9 terminase large subunit head and packaging -1 3272 5164
BBD20154.1 AP018361_p39 tail-host specificity protein phrog_588 tail fiber protein and host specificity tail -1 25767 28187
BBD20121.1 AP018361_p6 terminase small subunit phrog_83 terminase small subunit head and packaging -1 5161 5634
BBD20166.1 AP018361_p1 integrase family protein phrog_1 integrase integration and excision 1 38075 38421
BBD20166.1 AP018361_p1 integrase family protein phrog_1 integrase integration and excision 1 1 904
BBD20151.1 AP018361_p36 phage holin, LL-H family phrog_2609 holin lysis -1 24607 25044
BBD20141.1 AP018361_p26 hypothetical protein phrog_5144 unknown function unknown function -1 17682 17834
BBD20163.1 AP018361_p48 hypothetical protein phrog_40 head-tail adaptor Ad1 connector -1 36700 37050
BBD20162.1 AP018361_p47 head-tail joining protein phrog_25 head closure Hc1 connector -1 36366 36710
BBD20131.1 AP018361_p16 hypothetical protein phrog_1709 unknown function unknown function -1 10503 10787
BBD20123.1 AP018361_p8 hypothetical protein phrog_7615 unknown function unknown function -1 6276 6584
BBD20125.1 AP018361_p10 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 6900 7469
BBD20155.1 AP018361_p40 phage tail fiber protein phrog_202 distal tail protein Dit tail -1 28188 30110
BBD20117.1 AP018361_p2 ATP-dependent Clp protease proteolytic subunit phrog_94 head maturation protease head and packaging -1 1195 1911
BBD20138.1 AP018361_p23 NTP-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 16247 16969
BBD20126.1 AP018361_p11 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 7429 8646
BBD20160.1 AP018361_p45 DUF806 domain-containing protein phrog_1217 tail protein tail -1 35576 35947
BBD20147.1 AP018361_p32 phage repressor protein phrog_2977 anti-repressor transcription regulation -1 22170 22337
BBD20150.1 AP018361_p35 lysin protein phrog_291 endolysin lysis -1 23430 24596
BBD20119.1 AP018361_p4 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover -1 3076 3285
BBD20129.1 AP018361_p14 hypothetical protein phrog_19188 unknown function unknown function -1 9575 9712
BBD20152.1 AP018361_p37 hypothetical protein phrog_1009 unknown function unknown function -1 25031 25321
BBD20124.1 AP018361_p9 phage-related protein, ribonucleoside-diphosphate reductase phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 6587 6907
BBD20118.1 AP018361_p3 portal protein phrog_12 portal protein head and packaging -1 1889 3076
BBD20143.1 AP018361_p28 hypothetical protein phrog_1726 anti-repressor transcription regulation -1 18323 19135
BBD20146.1 AP018361_p31 glycosyltransferase phrog_22973 glycosyltransferase moron, auxiliary metabolic gene and host takeover -1 20604 22094
BBD20145.1 AP018361_p30 DNA-binding helix-turn-helix protein phrog_4 transcriptional repressor transcription regulation 1 19537 20421
BBD20148.1 AP018361_p33 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 22338 22604
BBD20136.1 AP018361_p21 single-stranded DNA-binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 14266 14784
BBD20127.1 AP018361_p12 autolysin regulatory protein ArpU phrog_248 transcriptional activator transcription regulation -1 9016 9459