| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
AP018361 |
Definition |
Lactobacillus phage T25 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
38421 |
Host Name |
Lactobacillus paracasei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
44.54 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| BBD20132.1 | AP018361_p17 | hypothetical protein | phrog_5222 | unknown function | unknown function | -1 | 10768 | 10908 |
| BBD20128.1 | AP018361_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9472 | 9585 |
| BBD20135.1 | AP018361_p20 | DNA primase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 11807 | 14107 |
| BBD20149.1 | AP018361_p34 | Gp2 phage-like protein | singleton | unknown function | unknown function | 1 | 22775 | 23353 |
| BBD20142.1 | AP018361_p27 | hypothetical protein | phrog_823 | unknown function | unknown function | -1 | 17919 | 18275 |
| BBD20130.1 | AP018361_p15 | site-specific DNA-methyltransferase | phrog_67 | DNA methyltransferase | other | -1 | 9748 | 10506 |
| BBD20134.1 | AP018361_p19 | VRR-NUC domain protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 11181 | 11513 |
| BBD20164.1 | AP018361_p49 | phage major capsid protein | phrog_15928 | major head protein | head and packaging | -1 | 37080 | 37694 |
| BBD20133.1 | AP018361_p18 | hypothetical protein | phrog_6766 | unknown function | unknown function | -1 | 10905 | 11090 |
| BBD20137.1 | AP018361_p22 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 14908 | 16284 |
| BBD20153.1 | AP018361_p38 | hypothetical protein | phrog_4573 | unknown function | unknown function | -1 | 25475 | 25765 |
| BBD20161.1 | AP018361_p46 | head-tail connector protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 35944 | 36363 |
| BBD20158.1 | AP018361_p43 | tail component | phrog_1346 | tail protein | tail | -1 | 34425 | 34889 |
| BBD20156.1 | AP018361_p41 | tail protein | phrog_167 | tail length tape measure protein | tail | -1 | 30111 | 34220 |
| BBD20139.1 | AP018361_p24 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | -1 | 16970 | 17455 |
| BBD20157.1 | AP018361_p42 | hypothetical protein | phrog_2629 | unknown function | unknown function | -1 | 34217 | 34447 |
| BBD20140.1 | AP018361_p25 | hypothetical protein | phrog_5205 | unknown function | unknown function | -1 | 17474 | 17677 |
| BBD20165.1 | AP018361_p50 | tail component | singleton | unknown function | unknown function | 1 | 37901 | 38074 |
| BBD20122.1 | AP018361_p7 | phage endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 5769 | 6212 |
| BBD20144.1 | AP018361_p29 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 19170 | 19409 |
| BBD20159.1 | AP018361_p44 | phage tail protein | phrog_88 | major tail protein | tail | -1 | 34932 | 35564 |
| BBD20120.1 | AP018361_p5 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 3272 | 5164 |
| BBD20154.1 | AP018361_p39 | tail-host specificity protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 25767 | 28187 |
| BBD20121.1 | AP018361_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 5161 | 5634 |
| BBD20166.1 | AP018361_p1 | integrase family protein | phrog_1 | integrase | integration and excision | 1 | 38075 | 38421 |
| BBD20166.1 | AP018361_p1 | integrase family protein | phrog_1 | integrase | integration and excision | 1 | 1 | 904 |
| BBD20151.1 | AP018361_p36 | phage holin, LL-H family | phrog_2609 | holin | lysis | -1 | 24607 | 25044 |
| BBD20141.1 | AP018361_p26 | hypothetical protein | phrog_5144 | unknown function | unknown function | -1 | 17682 | 17834 |
| BBD20163.1 | AP018361_p48 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 36700 | 37050 |
| BBD20162.1 | AP018361_p47 | head-tail joining protein | phrog_25 | head closure Hc1 | connector | -1 | 36366 | 36710 |
| BBD20131.1 | AP018361_p16 | hypothetical protein | phrog_1709 | unknown function | unknown function | -1 | 10503 | 10787 |
| BBD20123.1 | AP018361_p8 | hypothetical protein | phrog_7615 | unknown function | unknown function | -1 | 6276 | 6584 |
| BBD20125.1 | AP018361_p10 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 6900 | 7469 |
| BBD20155.1 | AP018361_p40 | phage tail fiber protein | phrog_202 | distal tail protein Dit | tail | -1 | 28188 | 30110 |
| BBD20117.1 | AP018361_p2 | ATP-dependent Clp protease proteolytic subunit | phrog_94 | head maturation protease | head and packaging | -1 | 1195 | 1911 |
| BBD20138.1 | AP018361_p23 | NTP-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 16247 | 16969 |
| BBD20126.1 | AP018361_p11 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 7429 | 8646 |
| BBD20160.1 | AP018361_p45 | DUF806 domain-containing protein | phrog_1217 | tail protein | tail | -1 | 35576 | 35947 |
| BBD20147.1 | AP018361_p32 | phage repressor protein | phrog_2977 | anti-repressor | transcription regulation | -1 | 22170 | 22337 |
| BBD20150.1 | AP018361_p35 | lysin protein | phrog_291 | endolysin | lysis | -1 | 23430 | 24596 |
| BBD20119.1 | AP018361_p4 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 3076 | 3285 |
| BBD20129.1 | AP018361_p14 | hypothetical protein | phrog_19188 | unknown function | unknown function | -1 | 9575 | 9712 |
| BBD20152.1 | AP018361_p37 | hypothetical protein | phrog_1009 | unknown function | unknown function | -1 | 25031 | 25321 |
| BBD20124.1 | AP018361_p9 | phage-related protein, ribonucleoside-diphosphate reductase | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 6587 | 6907 |
| BBD20118.1 | AP018361_p3 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 1889 | 3076 |
| BBD20143.1 | AP018361_p28 | hypothetical protein | phrog_1726 | anti-repressor | transcription regulation | -1 | 18323 | 19135 |
| BBD20146.1 | AP018361_p31 | glycosyltransferase | phrog_22973 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 20604 | 22094 |
| BBD20145.1 | AP018361_p30 | DNA-binding helix-turn-helix protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 19537 | 20421 |
| BBD20148.1 | AP018361_p33 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 22338 | 22604 |
| BBD20136.1 | AP018361_p21 | single-stranded DNA-binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 14266 | 14784 |
| BBD20127.1 | AP018361_p12 | autolysin regulatory protein ArpU | phrog_248 | transcriptional activator | transcription regulation | -1 | 9016 | 9459 |