functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
AP018469 |
Definition |
Mycobacterium phage Y10 DNA, complete genome, note: sample1. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; Mycobacterium virus Fionnbarth. |
DB of origin |
NUCCORE |
Length |
57990 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
67.88 |
Number of singletons |
1 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
BBC43323.1 | AP018469_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29257 | 29445 |
BBC43349.1 | AP018469_p61 | exonuclease | phrog_1498 | unknown function | unknown function | 1 | 40915 | 41079 |
BBC43372.1 | AP018469_p84 | hypothetical protein | phrog_12916 | unknown function | unknown function | 1 | 53744 | 53899 |
BBC43321.1 | AP018469_p33 | holin | phrog_565 | holin | lysis | 1 | 28458 | 28856 |
BBC43362.1 | AP018469_p74 | hypothetical protein | phrog_12358 | unknown function | unknown function | 1 | 49056 | 49748 |
BBC43331.1 | AP018469_p43 | hypothetical protein | phrog_806 | unknown function | unknown function | -1 | 32835 | 33356 |
BBC43365.1 | AP018469_p77 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 50851 | 51354 |
BBC43319.1 | AP018469_p31 | putitive lysin A | phrog_317 | endolysin | lysis | 1 | 26019 | 27629 |
BBC43358.1 | AP018469_p70 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44849 | 45229 |
BBC43374.1 | AP018469_p86 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 54343 | 55134 |
BBC43328.1 | AP018469_p40 | hypothetical protein | phrog_7217 | unknown function | unknown function | 1 | 31709 | 32011 |
BBC43317.1 | AP018469_p29 | putitive minor tail protein | phrog_416 | minor tail protein | tail | 1 | 24585 | 25589 |
BBC43318.1 | AP018469_p30 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25611 | 25988 |
BBC43379.1 | AP018469_p91 | methyltransferase | phrog_2675 | DNA methyltransferase | other | 1 | 57383 | 57958 |
BBC43345.1 | AP018469_p57 | hypothetical protein | phrog_14062 | unknown function | unknown function | 1 | 39444 | 39653 |
BBC43320.1 | AP018469_p32 | putitive lysin B | phrog_102 | endolysin | lysis | 1 | 27629 | 28420 |
BBC43310.1 | AP018469_p22 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 13313 | 17488 |
BBC43290.1 | AP018469_p2 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 251 | 481 |
BBC43289.1 | AP018469_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 117 | 254 |
BBC43343.1 | AP018469_p55 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 38363 | 39055 |
BBC43295.1 | AP018469_p7 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1985 | 2224 |
BBC43302.1 | AP018469_p14 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 9164 | 10093 |
BBC43334.1 | AP018469_p46 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35747 | 36100 |
BBC43325.1 | AP018469_p37 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30625 | 30906 |
BBC43326.1 | AP018469_p38 | HTH DNA binding protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31056 | 31379 |
BBC43368.1 | AP018469_p80 | hypothetical protein | phrog_16540 | unknown function | unknown function | 1 | 52510 | 52887 |
BBC43377.1 | AP018469_p89 | hypothetical protein | phrog_14339 | unknown function | unknown function | 1 | 56862 | 57074 |
BBC43314.1 | AP018469_p26 | putitive minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 20925 | 22022 |
BBC43336.1 | AP018469_p48 | puative excise protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36482 | 36667 |
BBC43371.1 | AP018469_p83 | hypothetical protein | phrog_3963 | unknown function | unknown function | 1 | 53421 | 53729 |
BBC43378.1 | AP018469_p90 | putaive HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 57078 | 57383 |
BBC43354.1 | AP018469_p66 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42759 | 43424 |
BBC43360.1 | AP018469_p72 | hypothetical protein | phrog_10480 | unknown function | unknown function | 1 | 48167 | 48571 |
BBC43357.1 | AP018469_p69 | hypothetical protein | phrog_12554 | unknown function | unknown function | 1 | 44689 | 44859 |
BBC43308.1 | AP018469_p20 | putitive tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 12430 | 12879 |
BBC43359.1 | AP018469_p71 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45321 | 47942 |
BBC43338.1 | AP018469_p50 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36976 | 37158 |
BBC43305.1 | AP018469_p17 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 10953 | 11213 |
BBC43300.1 | AP018469_p12 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 8245 | 8442 |
BBC43346.1 | AP018469_p58 | type II toxin-antitoxin system HicA family toxin | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 39650 | 39871 |
BBC43375.1 | AP018469_p87 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 55199 | 55906 |
BBC43307.1 | AP018469_p19 | major tail protein | phrog_117 | major tail protein | tail | 1 | 11716 | 12327 |
BBC43356.1 | AP018469_p68 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 43844 | 44689 |
BBC43322.1 | AP018469_p34 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28853 | 29188 |
BBC43301.1 | AP018469_p13 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 8533 | 9105 |
BBC43350.1 | AP018469_p62 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41076 | 41939 |
BBC43298.1 | AP018469_p10 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3922 | 5508 |
BBC43370.1 | AP018469_p82 | hypothetical protein | phrog_7647 | unknown function | unknown function | 1 | 53159 | 53392 |
BBC43312.1 | AP018469_p24 | putitive minor tail protein | phrog_110 | minor tail protein | tail | 1 | 18637 | 20409 |
BBC43306.1 | AP018469_p18 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 11210 | 11635 |
BBC43304.1 | AP018469_p16 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 10610 | 10966 |
BBC43296.1 | AP018469_p8 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 2221 | 2493 |
BBC43291.1 | AP018469_p3 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 478 | 645 |
BBC43341.1 | AP018469_p53 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 37767 | 38120 |
BBC43332.1 | AP018469_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 33595 | 34860 |
BBC43348.1 | AP018469_p60 | exonuclease | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40319 | 40915 |
BBC43299.1 | AP018469_p11 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 5489 | 8248 |
BBC43364.1 | AP018469_p76 | hypothetical protein | phrog_12502 | unknown function | unknown function | 1 | 50651 | 50854 |
BBC43297.1 | AP018469_p9 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 2570 | 3910 |
BBC43355.1 | AP018469_p67 | puative glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43533 | 43847 |
BBC43337.1 | AP018469_p49 | hypothetical protein | phrog_14099 | unknown function | unknown function | 1 | 36672 | 36932 |
BBC43376.1 | AP018469_p88 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 55993 | 56691 |
BBC43339.1 | AP018469_p51 | hypothetical protein | phrog_11977 | unknown function | unknown function | 1 | 37155 | 37466 |
BBC43352.1 | AP018469_p64 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42079 | 42297 |
BBC43327.1 | AP018469_p39 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 31413 | 31712 |
BBC43353.1 | AP018469_p65 | hypothetical protein | phrog_12856 | unknown function | unknown function | 1 | 42288 | 42575 |
BBC43313.1 | AP018469_p25 | putitive minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 20410 | 20928 |
BBC43347.1 | AP018469_p59 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39964 | 40239 |
BBC43366.1 | AP018469_p78 | protease | phrog_1006 | unknown function | unknown function | 1 | 51399 | 51974 |
BBC43303.1 | AP018469_p15 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 10242 | 10607 |
BBC43292.1 | AP018469_p4 | hypothetical protein | phrog_5972 | unknown function | unknown function | 1 | 645 | 914 |
BBC43340.1 | AP018469_p52 | hypothetical protein | phrog_12473 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37469 | 37774 |
BBC43294.1 | AP018469_p6 | hypothetical protein | phrog_7999 | unknown function | unknown function | 1 | 1273 | 1959 |
BBC43335.1 | AP018469_p47 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36237 | 36485 |
BBC43309.1 | AP018469_p21 | putitive tail assembly chaperone | phrog_3656 | tail assembly chaperone | tail | 1 | 12813 | 13310 |
BBC43361.1 | AP018469_p73 | HNH endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 48583 | 49059 |
BBC43316.1 | AP018469_p28 | putitive minor tail protein | phrog_746 | minor tail protein | tail | 1 | 22272 | 24581 |
BBC43344.1 | AP018469_p56 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 39052 | 39447 |
BBC43315.1 | AP018469_p27 | putitive minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 22034 | 22279 |
BBC43367.1 | AP018469_p79 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 52223 | 52492 |
BBC43293.1 | AP018469_p5 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 911 | 1273 |
BBC43330.1 | AP018469_p42 | hypothetical protein | phrog_8324 | unknown function | unknown function | 1 | 32390 | 32737 |
BBC43342.1 | AP018469_p54 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 38120 | 38359 |
BBC43351.1 | AP018469_p63 | hypothetical protein | phrog_10545 | unknown function | unknown function | 1 | 41939 | 42082 |
BBC43311.1 | AP018469_p23 | putitive minor tail protein | phrog_106 | minor tail protein | tail | 1 | 17489 | 18622 |
BBC43324.1 | AP018469_p36 | phosphoesterase | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29432 | 30622 |
BBC43363.1 | AP018469_p75 | HTH DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 49773 | 50651 |
BBC43329.1 | AP018469_p41 | hypothetical protein | phrog_3851 | unknown function | unknown function | 1 | 32004 | 32393 |
BBC43373.1 | AP018469_p85 | hypothetical protein | phrog_11871 | unknown function | unknown function | 1 | 53896 | 54255 |
BBC43369.1 | AP018469_p81 | hypothetical protein | phrog_7536 | unknown function | unknown function | 1 | 52884 | 53057 |
BBC43333.1 | AP018469_p45 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34841 | 35662 |