Genomic map of Mycobacterium phage PP (AP018486)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AP018486
Definition
Mycobacterium phage PP DNA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
NUCCORE
Length
51509
Host Name
Mycobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
64.48
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BBC53837.1 AP018486_p43 hypothetical protein phrog_383 unknown function unknown function -1 32351 32716
BBC53823.1 AP018486_p29 head-to-tail connector phrog_320 head closure Hc1 connector 1 19074 19457
BBC53822.1 AP018486_p28 hypothetical protein phrog_2348 unknown function unknown function 1 18919 19077
BBC53871.1 AP018486_p77 hypotheical protein phrog_37415 unknown function unknown function -1 49641 49934
BBC53827.1 AP018486_p33 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 20980 21342
BBC53872.1 AP018486_p78 site-specific DNA-cytosine methylase phrog_363 DNA methyltransferase other -1 50058 50822
BBC53809.1 AP018486_p15 hypothetical protein phrog_819 tail protein tail 1 6781 7488
BBC53804.1 AP018486_p10 hypothetical protein phrog_16818 unknown function unknown function -1 2317 2607
BBC53853.1 AP018486_p59 putaive DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 42227 42631
BBC53863.1 AP018486_p69 helix-turn-helix DNA binding protein phrog_520 unknown function unknown function -1 46463 46873
BBC53838.1 AP018486_p44 hypothetical protein phrog_2099 unknown function unknown function -1 32706 32996
BBC53858.1 AP018486_p64 hypothetical protein phrog_289 GTP-binding domain other -1 44173 44619
BBC53818.1 AP018486_p24 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 16745 17263
BBC53854.1 AP018486_p60 putaive DNA primase singleton unknown function unknown function -1 42628 42795
BBC53805.1 AP018486_p11 hypothetical protein phrog_2287 unknown function unknown function -1 2697 2903
BBC53811.1 AP018486_p17 hypothetical protein singleton unknown function unknown function -1 9679 9786
BBC53855.1 AP018486_p61 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 42814 43275
BBC53866.1 AP018486_p72 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 48084 48590
BBC53839.1 AP018486_p45 hypothetical protein singleton unknown function unknown function -1 32989 33255
BBC53860.1 AP018486_p66 hypotheical protein phrog_3641 unknown function unknown function -1 45114 45311
BBC53808.1 AP018486_p14 hypothetical protein phrog_1260 minor tail protein tail 1 5429 6784
BBC53832.1 AP018486_p38 minor tail protein phrog_352 minor tail protein tail 1 27632 28081
BBC53867.1 AP018486_p73 hypotheical protein phrog_1173 unknown function unknown function -1 48865 49011
BBC53840.1 AP018486_p46 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33271 35109
BBC53798.1 AP018486_p4 hypothetical protein phrog_828 unknown function unknown function -1 901 1143
BBC53799.1 AP018486_p5 hypothetical protein phrog_2001 unknown function unknown function -1 1101 1199
BBC53816.1 AP018486_p22 portal protein phrog_104 portal protein head and packaging 1 14143 15684
BBC53833.1 AP018486_p39 minor tail protein phrog_404 minor tail protein tail 1 28078 28395
BBC53846.1 AP018486_p52 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 36992 39052
BBC53874.1 AP018486_p80 hypotheical protein singleton unknown function unknown function -1 51220 51468
BBC53831.1 AP018486_p37 minor tail protein phrog_110 minor tail protein tail 1 25826 27616
BBC53861.1 AP018486_p67 hypotheical protein phrog_397 unknown function unknown function -1 45308 45562
BBC53851.1 AP018486_p57 hypotheical protein singleton unknown function unknown function -1 41601 41723
BBC53862.1 AP018486_p68 putaive DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 45571 46386
BBC53800.1 AP018486_p6 hypothetical protein phrog_2246 unknown function unknown function -1 1196 1399
BBC53868.1 AP018486_p74 hypothetical protein phrog_1477 unknown function unknown function -1 49015 49167
BBC53843.1 AP018486_p49 hypotheical protein singleton unknown function unknown function -1 35665 35886
BBC53803.1 AP018486_p9 hypothetical protein phrog_1445 unknown function unknown function -1 2150 2269
BBC53795.1 AP018486_p1 hypothetical protein phrog_586 unknown function unknown function -1 3 413
BBC53845.1 AP018486_p51 hypotheical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 36378 36962
BBC53844.1 AP018486_p50 HTH DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 35883 36311
BBC53813.1 AP018486_p19 holin phrog_526 holin lysis 1 11239 11685
BBC53825.1 AP018486_p31 head-to-tail connector phrog_123 tail terminator connector 1 19817 20266
BBC53819.1 AP018486_p25 major capsid protein phrog_10 major head protein head and packaging 1 17295 18293
BBC53801.1 AP018486_p7 hypothetical protein phrog_31649 unknown function unknown function -1 1487 1873
BBC53849.1 AP018486_p55 hypotheical protein phrog_1167 phosphofructokinase other -1 40698 41225
BBC53852.1 AP018486_p58 putaive DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 41752 42225
BBC53815.1 AP018486_p21 terminase large subunit phrog_9 terminase large subunit head and packaging 1 12452 14146
BBC53847.1 AP018486_p53 helix-turn-helix DNA binding protein phrog_354 sigma-K factor transcription regulation -1 39049 39933
BBC53821.1 AP018486_p27 portal protein phrog_137 head-tail adaptor Ad1 connector 1 18548 18922
BBC53812.1 AP018486_p18 lysin A phrog_317 endolysin lysis 1 9773 11242
BBC53850.1 AP018486_p56 hypotheical protein phrog_4195 unknown function unknown function -1 41218 41604
BBC53842.1 AP018486_p48 hypotheical protein phrog_18021 unknown function unknown function -1 35462 35668
BBC53835.1 AP018486_p41 integrase phrog_95 integrase integration and excision -1 30374 31804
BBC53865.1 AP018486_p71 hypotheical protein phrog_4421 unknown function unknown function -1 47808 48071
BBC53836.1 AP018486_p42 deoxycytidylate deaminase singleton unknown function unknown function -1 31975 32157
BBC53826.1 AP018486_p32 major tail protein phrog_117 major tail protein tail 1 20281 20862
BBC53830.1 AP018486_p36 minor tail protein phrog_106 minor tail protein tail 1 24810 25829
BBC53807.1 AP018486_p13 hypothetical protein phrog_226 minor tail protein tail 1 4904 5341
BBC53834.1 AP018486_p40 minor tail protein phrog_2689 minor tail protein tail 1 28396 30327
BBC53856.1 AP018486_p62 hypothetical protein singleton unknown function unknown function -1 43272 43352
BBC53796.1 AP018486_p2 hypothetical protein singleton unknown function unknown function -1 501 740
BBC53806.1 AP018486_p12 transcriptional factor singleton unknown function unknown function -1 2932 3126
BBC53814.1 AP018486_p20 lysin B phrog_102 endolysin lysis 1 11682 12425
BBC53829.1 AP018486_p35 tape measure protein phrog_305 tail length tape measure protein tail 1 21773 24784
BBC53810.1 AP018486_p16 hypothetical protein phrog_553 minor tail protein tail 1 7492 9528
BBC53797.1 AP018486_p3 hypothetical protein phrog_15203 unknown function unknown function -1 750 869
BBC53869.1 AP018486_p75 hypotheical protein singleton unknown function unknown function -1 49167 49337
BBC53824.1 AP018486_p30 head-to-tail connector phrog_321 tail completion or Neck1 protein connector 1 19459 19803
BBC53870.1 AP018486_p76 hypotheical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 49325 49639
BBC53828.1 AP018486_p34 tail assembly chaperone phrog_3656 tail assembly chaperone tail 1 21309 21773
BBC53859.1 AP018486_p65 putaive esterase/lipase singleton unknown function unknown function -1 44845 45117
BBC53820.1 AP018486_p26 hypothetical protein phrog_748 head-tail connector protein connector 1 18359 18544
BBC53873.1 AP018486_p79 hypotheical protein phrog_33883 unknown function unknown function -1 50867 51223
BBC53841.1 AP018486_p47 hypothetical protein phrog_2094 unknown function unknown function -1 35118 35462
BBC53802.1 AP018486_p8 hypothetical protein singleton unknown function unknown function -1 1902 2120
BBC53848.1 AP018486_p54 DNA repair exonuclease SbcCD nuclease subunit phrog_221 metallo-phosphoesterase other -1 39934 40701
BBC53817.1 AP018486_p23 capsid maturation protease phrog_193 head maturation protease head and packaging 1 15688 16686
BBC53857.1 AP018486_p63 esterase/lipase phrog_789 esterase/lipase other -1 43349 44176
BBC53864.1 AP018486_p70 RecB-like exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 46928 47737