| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
AP018486 |
Definition |
Mycobacterium phage PP DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
51509 |
Host Name |
Mycobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
64.48 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| BBC53837.1 | AP018486_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32351 | 32716 |
| BBC53823.1 | AP018486_p29 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 19074 | 19457 |
| BBC53822.1 | AP018486_p28 | hypothetical protein | phrog_2348 | unknown function | unknown function | 1 | 18919 | 19077 |
| BBC53871.1 | AP018486_p77 | hypotheical protein | phrog_37415 | unknown function | unknown function | -1 | 49641 | 49934 |
| BBC53827.1 | AP018486_p33 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 20980 | 21342 |
| BBC53872.1 | AP018486_p78 | site-specific DNA-cytosine methylase | phrog_363 | DNA methyltransferase | other | -1 | 50058 | 50822 |
| BBC53809.1 | AP018486_p15 | hypothetical protein | phrog_819 | tail protein | tail | 1 | 6781 | 7488 |
| BBC53804.1 | AP018486_p10 | hypothetical protein | phrog_16818 | unknown function | unknown function | -1 | 2317 | 2607 |
| BBC53853.1 | AP018486_p59 | putaive DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 42227 | 42631 |
| BBC53863.1 | AP018486_p69 | helix-turn-helix DNA binding protein | phrog_520 | unknown function | unknown function | -1 | 46463 | 46873 |
| BBC53838.1 | AP018486_p44 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 32706 | 32996 |
| BBC53858.1 | AP018486_p64 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 44173 | 44619 |
| BBC53818.1 | AP018486_p24 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 16745 | 17263 |
| BBC53854.1 | AP018486_p60 | putaive DNA primase | singleton | unknown function | unknown function | -1 | 42628 | 42795 |
| BBC53805.1 | AP018486_p11 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 2697 | 2903 |
| BBC53811.1 | AP018486_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9679 | 9786 |
| BBC53855.1 | AP018486_p61 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 42814 | 43275 |
| BBC53866.1 | AP018486_p72 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 48084 | 48590 |
| BBC53839.1 | AP018486_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32989 | 33255 |
| BBC53860.1 | AP018486_p66 | hypotheical protein | phrog_3641 | unknown function | unknown function | -1 | 45114 | 45311 |
| BBC53808.1 | AP018486_p14 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 5429 | 6784 |
| BBC53832.1 | AP018486_p38 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 27632 | 28081 |
| BBC53867.1 | AP018486_p73 | hypotheical protein | phrog_1173 | unknown function | unknown function | -1 | 48865 | 49011 |
| BBC53840.1 | AP018486_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33271 | 35109 |
| BBC53798.1 | AP018486_p4 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 901 | 1143 |
| BBC53799.1 | AP018486_p5 | hypothetical protein | phrog_2001 | unknown function | unknown function | -1 | 1101 | 1199 |
| BBC53816.1 | AP018486_p22 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 14143 | 15684 |
| BBC53833.1 | AP018486_p39 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 28078 | 28395 |
| BBC53846.1 | AP018486_p52 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 36992 | 39052 |
| BBC53874.1 | AP018486_p80 | hypotheical protein | singleton | unknown function | unknown function | -1 | 51220 | 51468 |
| BBC53831.1 | AP018486_p37 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 25826 | 27616 |
| BBC53861.1 | AP018486_p67 | hypotheical protein | phrog_397 | unknown function | unknown function | -1 | 45308 | 45562 |
| BBC53851.1 | AP018486_p57 | hypotheical protein | singleton | unknown function | unknown function | -1 | 41601 | 41723 |
| BBC53862.1 | AP018486_p68 | putaive DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 45571 | 46386 |
| BBC53800.1 | AP018486_p6 | hypothetical protein | phrog_2246 | unknown function | unknown function | -1 | 1196 | 1399 |
| BBC53868.1 | AP018486_p74 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 49015 | 49167 |
| BBC53843.1 | AP018486_p49 | hypotheical protein | singleton | unknown function | unknown function | -1 | 35665 | 35886 |
| BBC53803.1 | AP018486_p9 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 2150 | 2269 |
| BBC53795.1 | AP018486_p1 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 3 | 413 |
| BBC53845.1 | AP018486_p51 | hypotheical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36378 | 36962 |
| BBC53844.1 | AP018486_p50 | HTH DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35883 | 36311 |
| BBC53813.1 | AP018486_p19 | holin | phrog_526 | holin | lysis | 1 | 11239 | 11685 |
| BBC53825.1 | AP018486_p31 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 19817 | 20266 |
| BBC53819.1 | AP018486_p25 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 17295 | 18293 |
| BBC53801.1 | AP018486_p7 | hypothetical protein | phrog_31649 | unknown function | unknown function | -1 | 1487 | 1873 |
| BBC53849.1 | AP018486_p55 | hypotheical protein | phrog_1167 | phosphofructokinase | other | -1 | 40698 | 41225 |
| BBC53852.1 | AP018486_p58 | putaive DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 41752 | 42225 |
| BBC53815.1 | AP018486_p21 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 12452 | 14146 |
| BBC53847.1 | AP018486_p53 | helix-turn-helix DNA binding protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 39049 | 39933 |
| BBC53821.1 | AP018486_p27 | portal protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 18548 | 18922 |
| BBC53812.1 | AP018486_p18 | lysin A | phrog_317 | endolysin | lysis | 1 | 9773 | 11242 |
| BBC53850.1 | AP018486_p56 | hypotheical protein | phrog_4195 | unknown function | unknown function | -1 | 41218 | 41604 |
| BBC53842.1 | AP018486_p48 | hypotheical protein | phrog_18021 | unknown function | unknown function | -1 | 35462 | 35668 |
| BBC53835.1 | AP018486_p41 | integrase | phrog_95 | integrase | integration and excision | -1 | 30374 | 31804 |
| BBC53865.1 | AP018486_p71 | hypotheical protein | phrog_4421 | unknown function | unknown function | -1 | 47808 | 48071 |
| BBC53836.1 | AP018486_p42 | deoxycytidylate deaminase | singleton | unknown function | unknown function | -1 | 31975 | 32157 |
| BBC53826.1 | AP018486_p32 | major tail protein | phrog_117 | major tail protein | tail | 1 | 20281 | 20862 |
| BBC53830.1 | AP018486_p36 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 24810 | 25829 |
| BBC53807.1 | AP018486_p13 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 4904 | 5341 |
| BBC53834.1 | AP018486_p40 | minor tail protein | phrog_2689 | minor tail protein | tail | 1 | 28396 | 30327 |
| BBC53856.1 | AP018486_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 43272 | 43352 |
| BBC53796.1 | AP018486_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 501 | 740 |
| BBC53806.1 | AP018486_p12 | transcriptional factor | singleton | unknown function | unknown function | -1 | 2932 | 3126 |
| BBC53814.1 | AP018486_p20 | lysin B | phrog_102 | endolysin | lysis | 1 | 11682 | 12425 |
| BBC53829.1 | AP018486_p35 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 21773 | 24784 |
| BBC53810.1 | AP018486_p16 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 7492 | 9528 |
| BBC53797.1 | AP018486_p3 | hypothetical protein | phrog_15203 | unknown function | unknown function | -1 | 750 | 869 |
| BBC53869.1 | AP018486_p75 | hypotheical protein | singleton | unknown function | unknown function | -1 | 49167 | 49337 |
| BBC53824.1 | AP018486_p30 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 19459 | 19803 |
| BBC53870.1 | AP018486_p76 | hypotheical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 49325 | 49639 |
| BBC53828.1 | AP018486_p34 | tail assembly chaperone | phrog_3656 | tail assembly chaperone | tail | 1 | 21309 | 21773 |
| BBC53859.1 | AP018486_p65 | putaive esterase/lipase | singleton | unknown function | unknown function | -1 | 44845 | 45117 |
| BBC53820.1 | AP018486_p26 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 18359 | 18544 |
| BBC53873.1 | AP018486_p79 | hypotheical protein | phrog_33883 | unknown function | unknown function | -1 | 50867 | 51223 |
| BBC53841.1 | AP018486_p47 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35118 | 35462 |
| BBC53802.1 | AP018486_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1902 | 2120 |
| BBC53848.1 | AP018486_p54 | DNA repair exonuclease SbcCD nuclease subunit | phrog_221 | metallo-phosphoesterase | other | -1 | 39934 | 40701 |
| BBC53817.1 | AP018486_p23 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 15688 | 16686 |
| BBC53857.1 | AP018486_p63 | esterase/lipase | phrog_789 | esterase/lipase | other | -1 | 43349 | 44176 |
| BBC53864.1 | AP018486_p70 | RecB-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 46928 | 47737 |