Genomic map of Clostridium virus phiCD119 (AY855346)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
AY855346
Definition
Clostridium difficile bacteriophage phi CD119, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.
DB of origin
NUCCORE
Length
53325
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
28.77
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AAX53446.1 AY855346_p69 hypothetical protein phrog_19701 unknown function unknown function 1 46354 46593
AAX53417.1 AY855346_p45 RepR phrog_8 transcriptional regulator transcription regulation -1 32781 33176
AAZ32268.1 AY855346_p17 tape measure protein phrog_1272 tail length tape measure protein tail 1 11918 14752
AAZ32284.1 AY855346_p62 hypothetical protein phrog_19245 unknown function unknown function 1 43341 43997
AAX53480.1 AY855346_p20 XkdP protein phrog_21966 unknown function unknown function 1 16769 17155
AAX53474.1 AY855346_p46 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 33693 33911
AAX53445.1 AY855346_p68 hypothetical protein phrog_6066 unknown function unknown function 1 46155 46340
AAZ32290.1 AY855346_p76 hypothetical protein phrog_4010 unknown function unknown function 1 50824 51069
AAX53482.1 AY855346_p22 hypothetical protein phrog_1664 unknown function unknown function 1 17463 17705
AAZ32282.1 AY855346_p56 hypothetical protein phrog_10069 unknown function unknown function 1 40344 40709
AAZ32283.1 AY855346_p61 hypothetical protein phrog_8411 unknown function unknown function 1 42710 43042
AAX53415.1 AY855346_p2 terminase large subunit phrog_5573 terminase large subunit head and packaging 1 778 1746
AAX53428.1 AY855346_p52 replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 38134 39024
AAX53476.1 AY855346_p16 XkdN protein phrog_389 tail protein XkdN-like tail 1 11271 11741
AAX53503.1 AY855346_p42 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 29883 30155
AAX53460.1 AY855346_p37 hypothetical protein phrog_27061 unknown function unknown function 1 26360 26953
AAX53440.1 AY855346_p63 hypothetical protein phrog_21522 unknown function unknown function 1 43969 44337
AAX53435.1 AY855346_p58 hypothetical protein phrog_3221 unknown function unknown function 1 41354 41527
AAX53448.1 AY855346_p71 Holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47542 47895
AAX53491.1 AY855346_p30 hypothetical protein phrog_2137 tail fiber protein tail 1 22382 22705
AAZ32264.1 AY855346_p4 portal protein phrog_64 portal protein head and packaging 1 2610 3965
AAX53450.1 AY855346_p73 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 48785 49273
AAX53485.1 AY855346_p25 hypothetical protein phrog_579 unknown function unknown function 1 19500 19826
AAX53471.1 AY855346_p13 hypothetical protein phrog_525 unknown function unknown function 1 9270 9722
AAX53493.1 AY855346_p32 hypothetical protein phrog_1243 unknown function unknown function 1 23994 24176
AAX53490.1 AY855346_p29 hypothetical protein phrog_1780 tail collar fiber protein tail 1 21925 22323
AAZ32287.1 AY855346_p66 hypothetical protein phrog_4572 unknown function unknown function 1 45235 45606
AAX53479.1 AY855346_p19 hypothetical protein phrog_34918 unknown function unknown function 1 16506 16751
AAX53449.1 AY855346_p72 hypothetical protein phrog_373 anti-repressor transcription regulation 1 47984 48691
AAX53422.1 AY855346_p6 hypothetical protein phrog_4502 unknown function unknown function 1 5086 5715
AAZ32275.1 AY855346_p35 lysin phrog_435 endolysin lysis 1 24719 25534
AAZ32280.1 AY855346_p53 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 39274 39681
AAZ32288.1 AY855346_p74 hypothetical protein phrog_3291 unknown function unknown function 1 50000 50194
AAX53461.1 AY855346_p5 head protein phrog_115 minor head protein head and packaging 1 3978 5018
AAZ32271.1 AY855346_p24 hypothetical protein phrog_12508 unknown function unknown function 1 18694 19317
AAZ32269.1 AY855346_p21 hypothetical protein phrog_1664 unknown function unknown function 1 17134 17442
AAX53416.1 AY855346_p44 hypothetical protein phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover -1 31732 32133
AAZ32267.1 AY855346_p14 XkdK protein phrog_1480 tail sheath tail 1 9723 10793
AAX53475.1 AY855346_p15 XkdM protein phrog_365 tail protein tail 1 10808 11239
AAX53463.1 AY855346_p7 hypothetical protein phrog_4166 unknown function unknown function 1 5737 5931
AAZ32272.1 AY855346_p27 XkdT protein phrog_6 baseplate wedge subunit tail 1 20248 21300
AAX53469.1 AY855346_p11 hypothetical protein phrog_615 head-tail adaptor connector 1 8496 8846
AAX53499.1 AY855346_p38 hypothetical protein phrog_20189 unknown function unknown function 1 26971 27402
AAZ32265.1 AY855346_p9 capsid protein phrog_422 major head protein head and packaging 1 6943 7881
AAX53465.1 AY855346_p8 scaffold protein phrog_194 head scaffolding protein head and packaging 1 6323 6919
AAX53429.1 AY855346_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8909 9259
AAX53443.1 AY855346_p18 hypothetical protein phrog_888 unknown function unknown function 1 14957 15577
AAZ32277.1 AY855346_p43 integrase phrog_1 integrase integration and excision -1 30567 31673
AAZ32285.1 AY855346_p64 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 44368 45072
AAX53423.1 AY855346_p49 hypothetical protein phrog_4370 excisionase integration and excision 1 35954 36310
AAX53436.1 AY855346_p59 hypothetical protein phrog_8001 unknown function unknown function 1 41527 41862
AAX53486.1 AY855346_p26 XkdS protein phrog_120 baseplate wedge subunit tail 1 19826 20194
AAX53500.1 AY855346_p39 hypothetical protein phrog_22416 unknown function unknown function 1 27404 27730
AAX53447.1 AY855346_p70 methyltransferase phrog_56 DNA methyltransferase other 1 46722 47528
AAX53444.1 AY855346_p67 hypothetical protein phrog_31216 unknown function unknown function 1 45609 46076
AAX53468.1 AY855346_p10 hypothetical protein phrog_132 head-tail adaptor connector 1 8142 8423
AAX53427.1 AY855346_p51 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 37525 38133
AAX53502.1 AY855346_p78 hypothetical protein phrog_37271 unknown function unknown function 1 52718 53017
AAZ32281.1 AY855346_p55 hypothetical protein phrog_4813 unknown function unknown function 1 40057 40347
AAZ32286.1 AY855346_p65 hypothetical protein phrog_2994 unknown function unknown function 1 45069 45242
AAX53414.1 AY855346_p1 terminase small subunit phrog_4758 terminase large subunit head and packaging 1 201 692
AAZ32274.1 AY855346_p34 holin phrog_1129 holin lysis 1 24462 24719
AAX53492.1 AY855346_p31 hypothetical protein phrog_1589 unknown function unknown function 1 22723 23994
AAX53455.1 AY855346_p79 hypothetical protein phrog_28310 unknown function unknown function 1 53083 53313
AAX53484.1 AY855346_p60 hypothetical protein phrog_363 DNA methyltransferase other 1 41947 42729
AAZ32289.1 AY855346_p75 hypothetical protein phrog_1758 acetyltransferase other 1 50194 50805
AAZ32279.1 AY855346_p48 hypothetical protein phrog_9579 unknown function unknown function 1 35137 35331
AAX53501.1 AY855346_p40 hypothetical protein phrog_32696 unknown function unknown function 1 27702 28109
AAX53497.1 AY855346_p36 hypothetical protein phrog_17410 unknown function unknown function 1 25551 25847
AAX53489.1 AY855346_p28 hypothetical protein phrog_521 tail protein tail 1 21300 21908
AAZ32278.1 AY855346_p47 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 34260 35093
AAX53459.1 AY855346_p3 hypothetical protein phrog_35162 unknown function unknown function 1 1897 2595
AAX53430.1 AY855346_p54 hypothetical protein phrog_20040 unknown function unknown function 1 39756 40010
AAZ32273.1 AY855346_p33 hypothetical protein phrog_1193 hemolysin other 1 24212 24442
AAZ32291.1 AY855346_p77 hypothetical protein phrog_11123 unknown function unknown function 1 51466 52410
AAX53426.1 AY855346_p50 hypothetical protein phrog_20203 unknown function unknown function 1 37273 37515
AAZ32276.1 AY855346_p41 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 29562 29843
AAZ32270.1 AY855346_p23 XkdQ protein phrog_400 tail protein tail 1 17964 18650
AAX53433.1 AY855346_p57 hypothetical protein phrog_1310 unknown function unknown function 1 40774 41094