| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
AY855346 |
Definition |
Clostridium difficile bacteriophage phi CD119, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus. |
DB of origin |
NUCCORE |
Length |
53325 |
Host Name |
Clostridium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
28.77 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AAX53446.1 | AY855346_p69 | hypothetical protein | phrog_19701 | unknown function | unknown function | 1 | 46354 | 46593 |
| AAX53417.1 | AY855346_p45 | RepR | phrog_8 | transcriptional regulator | transcription regulation | -1 | 32781 | 33176 |
| AAZ32268.1 | AY855346_p17 | tape measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 11918 | 14752 |
| AAZ32284.1 | AY855346_p62 | hypothetical protein | phrog_19245 | unknown function | unknown function | 1 | 43341 | 43997 |
| AAX53480.1 | AY855346_p20 | XkdP protein | phrog_21966 | unknown function | unknown function | 1 | 16769 | 17155 |
| AAX53474.1 | AY855346_p46 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 33693 | 33911 |
| AAX53445.1 | AY855346_p68 | hypothetical protein | phrog_6066 | unknown function | unknown function | 1 | 46155 | 46340 |
| AAZ32290.1 | AY855346_p76 | hypothetical protein | phrog_4010 | unknown function | unknown function | 1 | 50824 | 51069 |
| AAX53482.1 | AY855346_p22 | hypothetical protein | phrog_1664 | unknown function | unknown function | 1 | 17463 | 17705 |
| AAZ32282.1 | AY855346_p56 | hypothetical protein | phrog_10069 | unknown function | unknown function | 1 | 40344 | 40709 |
| AAZ32283.1 | AY855346_p61 | hypothetical protein | phrog_8411 | unknown function | unknown function | 1 | 42710 | 43042 |
| AAX53415.1 | AY855346_p2 | terminase large subunit | phrog_5573 | terminase large subunit | head and packaging | 1 | 778 | 1746 |
| AAX53428.1 | AY855346_p52 | replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 38134 | 39024 |
| AAX53476.1 | AY855346_p16 | XkdN protein | phrog_389 | tail protein XkdN-like | tail | 1 | 11271 | 11741 |
| AAX53503.1 | AY855346_p42 | hypothetical protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 29883 | 30155 |
| AAX53460.1 | AY855346_p37 | hypothetical protein | phrog_27061 | unknown function | unknown function | 1 | 26360 | 26953 |
| AAX53440.1 | AY855346_p63 | hypothetical protein | phrog_21522 | unknown function | unknown function | 1 | 43969 | 44337 |
| AAX53435.1 | AY855346_p58 | hypothetical protein | phrog_3221 | unknown function | unknown function | 1 | 41354 | 41527 |
| AAX53448.1 | AY855346_p71 | Holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47542 | 47895 |
| AAX53491.1 | AY855346_p30 | hypothetical protein | phrog_2137 | tail fiber protein | tail | 1 | 22382 | 22705 |
| AAZ32264.1 | AY855346_p4 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2610 | 3965 |
| AAX53450.1 | AY855346_p73 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 48785 | 49273 |
| AAX53485.1 | AY855346_p25 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 19500 | 19826 |
| AAX53471.1 | AY855346_p13 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 9270 | 9722 |
| AAX53493.1 | AY855346_p32 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 23994 | 24176 |
| AAX53490.1 | AY855346_p29 | hypothetical protein | phrog_1780 | tail collar fiber protein | tail | 1 | 21925 | 22323 |
| AAZ32287.1 | AY855346_p66 | hypothetical protein | phrog_4572 | unknown function | unknown function | 1 | 45235 | 45606 |
| AAX53479.1 | AY855346_p19 | hypothetical protein | phrog_34918 | unknown function | unknown function | 1 | 16506 | 16751 |
| AAX53449.1 | AY855346_p72 | hypothetical protein | phrog_373 | anti-repressor | transcription regulation | 1 | 47984 | 48691 |
| AAX53422.1 | AY855346_p6 | hypothetical protein | phrog_4502 | unknown function | unknown function | 1 | 5086 | 5715 |
| AAZ32275.1 | AY855346_p35 | lysin | phrog_435 | endolysin | lysis | 1 | 24719 | 25534 |
| AAZ32280.1 | AY855346_p53 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39274 | 39681 |
| AAZ32288.1 | AY855346_p74 | hypothetical protein | phrog_3291 | unknown function | unknown function | 1 | 50000 | 50194 |
| AAX53461.1 | AY855346_p5 | head protein | phrog_115 | minor head protein | head and packaging | 1 | 3978 | 5018 |
| AAZ32271.1 | AY855346_p24 | hypothetical protein | phrog_12508 | unknown function | unknown function | 1 | 18694 | 19317 |
| AAZ32269.1 | AY855346_p21 | hypothetical protein | phrog_1664 | unknown function | unknown function | 1 | 17134 | 17442 |
| AAX53416.1 | AY855346_p44 | hypothetical protein | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 31732 | 32133 |
| AAZ32267.1 | AY855346_p14 | XkdK protein | phrog_1480 | tail sheath | tail | 1 | 9723 | 10793 |
| AAX53475.1 | AY855346_p15 | XkdM protein | phrog_365 | tail protein | tail | 1 | 10808 | 11239 |
| AAX53463.1 | AY855346_p7 | hypothetical protein | phrog_4166 | unknown function | unknown function | 1 | 5737 | 5931 |
| AAZ32272.1 | AY855346_p27 | XkdT protein | phrog_6 | baseplate wedge subunit | tail | 1 | 20248 | 21300 |
| AAX53469.1 | AY855346_p11 | hypothetical protein | phrog_615 | head-tail adaptor | connector | 1 | 8496 | 8846 |
| AAX53499.1 | AY855346_p38 | hypothetical protein | phrog_20189 | unknown function | unknown function | 1 | 26971 | 27402 |
| AAZ32265.1 | AY855346_p9 | capsid protein | phrog_422 | major head protein | head and packaging | 1 | 6943 | 7881 |
| AAX53465.1 | AY855346_p8 | scaffold protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 6323 | 6919 |
| AAX53429.1 | AY855346_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8909 | 9259 |
| AAX53443.1 | AY855346_p18 | hypothetical protein | phrog_888 | unknown function | unknown function | 1 | 14957 | 15577 |
| AAZ32277.1 | AY855346_p43 | integrase | phrog_1 | integrase | integration and excision | -1 | 30567 | 31673 |
| AAZ32285.1 | AY855346_p64 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 44368 | 45072 |
| AAX53423.1 | AY855346_p49 | hypothetical protein | phrog_4370 | excisionase | integration and excision | 1 | 35954 | 36310 |
| AAX53436.1 | AY855346_p59 | hypothetical protein | phrog_8001 | unknown function | unknown function | 1 | 41527 | 41862 |
| AAX53486.1 | AY855346_p26 | XkdS protein | phrog_120 | baseplate wedge subunit | tail | 1 | 19826 | 20194 |
| AAX53500.1 | AY855346_p39 | hypothetical protein | phrog_22416 | unknown function | unknown function | 1 | 27404 | 27730 |
| AAX53447.1 | AY855346_p70 | methyltransferase | phrog_56 | DNA methyltransferase | other | 1 | 46722 | 47528 |
| AAX53444.1 | AY855346_p67 | hypothetical protein | phrog_31216 | unknown function | unknown function | 1 | 45609 | 46076 |
| AAX53468.1 | AY855346_p10 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 8142 | 8423 |
| AAX53427.1 | AY855346_p51 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 37525 | 38133 |
| AAX53502.1 | AY855346_p78 | hypothetical protein | phrog_37271 | unknown function | unknown function | 1 | 52718 | 53017 |
| AAZ32281.1 | AY855346_p55 | hypothetical protein | phrog_4813 | unknown function | unknown function | 1 | 40057 | 40347 |
| AAZ32286.1 | AY855346_p65 | hypothetical protein | phrog_2994 | unknown function | unknown function | 1 | 45069 | 45242 |
| AAX53414.1 | AY855346_p1 | terminase small subunit | phrog_4758 | terminase large subunit | head and packaging | 1 | 201 | 692 |
| AAZ32274.1 | AY855346_p34 | holin | phrog_1129 | holin | lysis | 1 | 24462 | 24719 |
| AAX53492.1 | AY855346_p31 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 22723 | 23994 |
| AAX53455.1 | AY855346_p79 | hypothetical protein | phrog_28310 | unknown function | unknown function | 1 | 53083 | 53313 |
| AAX53484.1 | AY855346_p60 | hypothetical protein | phrog_363 | DNA methyltransferase | other | 1 | 41947 | 42729 |
| AAZ32289.1 | AY855346_p75 | hypothetical protein | phrog_1758 | acetyltransferase | other | 1 | 50194 | 50805 |
| AAZ32279.1 | AY855346_p48 | hypothetical protein | phrog_9579 | unknown function | unknown function | 1 | 35137 | 35331 |
| AAX53501.1 | AY855346_p40 | hypothetical protein | phrog_32696 | unknown function | unknown function | 1 | 27702 | 28109 |
| AAX53497.1 | AY855346_p36 | hypothetical protein | phrog_17410 | unknown function | unknown function | 1 | 25551 | 25847 |
| AAX53489.1 | AY855346_p28 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 21300 | 21908 |
| AAZ32278.1 | AY855346_p47 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 34260 | 35093 |
| AAX53459.1 | AY855346_p3 | hypothetical protein | phrog_35162 | unknown function | unknown function | 1 | 1897 | 2595 |
| AAX53430.1 | AY855346_p54 | hypothetical protein | phrog_20040 | unknown function | unknown function | 1 | 39756 | 40010 |
| AAZ32273.1 | AY855346_p33 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 24212 | 24442 |
| AAZ32291.1 | AY855346_p77 | hypothetical protein | phrog_11123 | unknown function | unknown function | 1 | 51466 | 52410 |
| AAX53426.1 | AY855346_p50 | hypothetical protein | phrog_20203 | unknown function | unknown function | 1 | 37273 | 37515 |
| AAZ32276.1 | AY855346_p41 | hypothetical protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 29562 | 29843 |
| AAZ32270.1 | AY855346_p23 | XkdQ protein | phrog_400 | tail protein | tail | 1 | 17964 | 18650 |
| AAX53433.1 | AY855346_p57 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 40774 | 41094 |