Genomic map of Natrinema SNJ2 provirus (CP003412)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
CP003412
Definition
Natrinema SNJ2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae.
DB of origin
NUCCORE
Length
16992
Host Name
Natrinema
Host domain
Archaea
Is prophage?
undef
Number of proteins
25
%GC
59.13
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFO55980.2 CP003412_p14 hypothetical protein phrog_1938 unknown function unknown function 1 9143 9712
AFO55970.1 CP003412_p24 hypothetical protein singleton unknown function unknown function -1 16261 16593
AFO55971.1 CP003412_p23 hypothetical protein phrog_4152 unknown function unknown function -1 16145 16264
AFO55976.1 CP003412_p18 hypothetical protein phrog_2095 unknown function unknown function 1 12297 12680
AFO55972.1 CP003412_p22 hypothetical protein phrog_2095 unknown function unknown function -1 15627 16148
AFO55975.1 CP003412_p19 hypothetical protein phrog_3288 transcriptional regulator transcription regulation -1 12951 14930
AFO55978.1 CP003412_p16 hypothetical protein phrog_9260 unknown function unknown function 1 10539 10856
AFO55974.1 CP003412_p20 hypothetical protein phrog_24778 unknown function unknown function -1 14891 15091
AFO55981.1 CP003412_p13 hypothetical protein phrog_2231 unknown function unknown function 1 7515 9140
AFO55984.1 CP003412_p10 hypothetical protein phrog_16897 unknown function unknown function 1 5587 6051
AFO55973.1 CP003412_p21 hypothetical protein phrog_2450 unknown function unknown function -1 15094 15630
AFO55985.1 CP003412_p9 hypothetical protein phrog_14115 unknown function unknown function -1 4474 5262
AFO55992.1 CP003412_p1 phage integrase/site-specific recombinase phrog_1 integrase integration and excision -1 63 1112
AFO55986.1 CP003412_p8 orc1/cdc6 family replication initiation protein phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 3349 4359
AFO55982.1 CP003412_p12 hypothetical protein phrog_3232 unknown function unknown function 1 7041 7433
AFO55990.1 CP003412_p3 transcriptional regulator PadR family protein phrog_4278 unknown function unknown function -1 1421 1846
AFO55969.1 CP003412_p25 hypothetical protein phrog_7550 unknown function unknown function -1 16586 16825
AFO55983.1 CP003412_p11 hypothetical protein phrog_6313 unknown function unknown function -1 6750 6935
AFO55989.1 CP003412_p5 hypothetical protein phrog_13047 unknown function unknown function 1 2414 2671
AFO55988.1 CP003412_p6 YcfA family protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 2672 2923
AFO55979.1 CP003412_p15 hypothetical protein phrog_3526 unknown function unknown function 1 9709 10542
AFO55987.1 CP003412_p7 hypothetical protein phrog_18711 unknown function unknown function -1 2926 3165
CP003412_p4 CP003412_p4 hypothetical protein phrog_2440 transcriptional regulator transcription regulation 1 2081 2347
AFO55991.1 CP003412_p2 hypothetical protein phrog_21306 unknown function unknown function -1 1093 1428
AFO55977.1 CP003412_p17 hypothetical protein phrog_1979 unknown function unknown function 1 10849 12027