Genomic map of Peptoclostridium phage phiCDIF1296T (CP011970)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
CP011970
Definition
Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
131326
Host Name
Peptoclostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
181
%GC
26.42
Number of singletons
0
Number of paralogs
16

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AKP44737.1 CP011970_p63 hypothetical protein phrog_9575 unknown function unknown function -1 61483 61713
AKP44777.1 CP011970_p103 hypothetical protein phrog_9756 unknown function unknown function -1 83572 83727
AKP44854.1 CP011970_p180 hypothetical protein phrog_1491 tail fiber protein tail 1 128743 129360
AKP44850.1 CP011970_p176 hypothetical protein phrog_9501 unknown function unknown function 1 124883 125746
AKP44689.1 CP011970_p15 hypothetical protein phrog_13029 unknown function unknown function 1 12773 13231
AKP44676.1 CP011970_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 890 2638
AKP44834.1 CP011970_p160 hypothetical protein phrog_11965 unknown function unknown function -1 115706 116290
AKP44759.1 CP011970_p85 hypothetical protein phrog_12498 unknown function unknown function -1 77016 77261
AKP44849.1 CP011970_p175 hypothetical protein phrog_14888 unknown function unknown function 1 124339 124611
AKP44816.1 CP011970_p142 hypothetical protein phrog_5735 unknown function unknown function -1 102961 103227
AKP44698.1 CP011970_p24 phage tail protein phrog_13137 tail length tape measure protein tail 1 18110 19735
AKP44747.1 CP011970_p73 hypothetical protein phrog_9693 unknown function unknown function -1 67773 68324
AKP44801.1 CP011970_p127 hypothetical protein phrog_12164 unknown function unknown function -1 96056 96604
AKP44783.1 CP011970_p109 hypothetical protein phrog_2393 transposase integration and excision -1 86634 86888
AKP44675.1 CP011970_p1 terminase small subunit phrog_3314 unknown function unknown function 1 1 900
AKP44835.1 CP011970_p161 hypothetical protein phrog_13396 unknown function unknown function -1 116328 116591
AKP44830.1 CP011970_p156 hypothetical protein phrog_11092 unknown function unknown function -1 112595 114040
AKP44767.1 CP011970_p93 hypothetical protein phrog_12648 unknown function unknown function -1 79442 79747
AKP44707.1 CP011970_p33 hypothetical protein phrog_7220 regulator of chromosome condensation DNA, RNA and nucleotide metabolism 1 34436 39715
AKP44702.1 CP011970_p28 hypothetical protein phrog_13860 unknown function unknown function 1 28042 28197
AKP44786.1 CP011970_p112 NrdG-like protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 88015 88512
AKP44709.1 CP011970_p35 tail fiber protein phrog_1162 tail fiber protein tail 1 40130 40669
AKP44714.1 CP011970_p40 hypothetical protein phrog_8852 unknown function unknown function 1 44804 45130
AKP44756.1 CP011970_p82 hypothetical protein phrog_9079 unknown function unknown function -1 73242 73562
AKP44705.1 CP011970_p31 hypothetical protein phrog_14191 unknown function unknown function 1 32180 32335
AKP44764.1 CP011970_p90 hypothetical protein phrog_10192 unknown function unknown function -1 78520 78687
AKP44788.1 CP011970_p114 hypothetical protein phrog_12520 unknown function unknown function -1 90790 91293
AKP44691.1 CP011970_p17 hypothetical protein phrog_34428 unknown function unknown function 1 14162 14269
AKP44833.1 CP011970_p159 hypothetical protein phrog_13170 unknown function unknown function -1 114891 115388
AKP44790.1 CP011970_p116 hypothetical protein phrog_9965 unknown function unknown function -1 91851 92036
AKP44811.1 CP011970_p137 hypothetical protein phrog_20228 unknown function unknown function -1 101366 101542
AKP44684.1 CP011970_p10 hypothetical protein phrog_10703 unknown function unknown function 1 8709 9698
AKP44845.1 CP011970_p171 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 121179 121490
AKP44844.1 CP011970_p170 hypothetical protein phrog_5553 unknown function unknown function -1 120124 120447
AKP44853.1 CP011970_p179 Bacterial DNA-binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 127751 128029
AKP44744.1 CP011970_p70 hypothetical protein phrog_13516 unknown function unknown function -1 64758 65030
AKP44799.1 CP011970_p125 hypothetical protein phrog_9264 unknown function unknown function -1 95663 95896
AKP44837.1 CP011970_p163 hypothetical protein phrog_15391 unknown function unknown function -1 117042 117545
AKP44731.1 CP011970_p57 Holliday junction resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 57098 57592
AKP44682.1 CP011970_p8 hypothetical protein phrog_5329 unknown function unknown function 1 7431 8063
AKP44735.1 CP011970_p61 modification methylase HindIII phrog_67 DNA methyltransferase other -1 59435 60556
AKP44852.1 CP011970_p178 hypothetical protein phrog_5767 sigma factor transcription regulation 1 126175 127617
AKP44729.1 CP011970_p55 hypothetical protein phrog_14190 unknown function unknown function -1 55858 56517
AKP44736.1 CP011970_p62 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 60608 61408
AKP44825.1 CP011970_p151 hypothetical protein phrog_4337 unknown function unknown function -1 110423 110908
AKP44832.1 CP011970_p158 hypothetical protein phrog_12818 unknown function unknown function -1 114736 114894
AKP44804.1 CP011970_p130 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 97755 97949
AKP44750.1 CP011970_p76 hypothetical protein phrog_6721 unknown function unknown function -1 69921 70586
AKP44719.1 CP011970_p45 holin phrog_9316 holin lysis 1 47115 47426
AKP44703.1 CP011970_p29 hypothetical protein phrog_6211 minor tail protein tail 1 28539 30254
AKP44746.1 CP011970_p72 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 66206 67732
AKP44795.1 CP011970_p121 hypothetical protein phrog_12337 unknown function unknown function -1 94064 94432
AKP44787.1 CP011970_p113 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 88505 90730
AKP44814.1 CP011970_p140 hypothetical protein phrog_21241 protease other -1 102259 102645
AKP44749.1 CP011970_p75 hypothetical protein phrog_2367 unknown function unknown function -1 68982 69875
AKP44712.1 CP011970_p38 hypothetical protein phrog_1243 unknown function unknown function 1 42678 42860
AKP44821.1 CP011970_p147 hypothetical protein phrog_2727 unknown function unknown function -1 107012 107584
AKP44681.1 CP011970_p7 structural protein phrog_4088 unknown function unknown function 1 6367 7377
AKP44839.1 CP011970_p165 hypothetical protein phrog_14903 unknown function unknown function -1 117861 118082
AKP44810.1 CP011970_p136 hypothetical protein phrog_13905 unknown function unknown function -1 100171 101349
AKP44734.1 CP011970_p60 DNA adenine methylase phrog_56 DNA methyltransferase other -1 58571 59401
AKP44758.1 CP011970_p84 DNA polymerase III subunit alpha phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 73916 76987
AKP44789.1 CP011970_p115 DNA ligase phrog_12420 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 91395 91796
AKP44762.1 CP011970_p88 hypothetical protein phrog_17638 unknown function unknown function -1 78190 78342
AKP44771.1 CP011970_p97 hypothetical protein phrog_10778 unknown function unknown function -1 80206 80616
AKP44770.1 CP011970_p96 hypothetical protein phrog_13734 unknown function unknown function -1 80002 80175
AKP44694.1 CP011970_p20 regulatory protein phrog_8 transcriptional regulator transcription regulation -1 15081 15530
AKP44792.1 CP011970_p118 hypothetical protein phrog_1672 unknown function unknown function -1 92447 92836
AKP44728.1 CP011970_p54 transposase phrog_5749 transposase integration and excision 1 54460 55770
AKP44791.1 CP011970_p117 hypothetical protein phrog_11883 unknown function unknown function -1 92067 92387
AKP44765.1 CP011970_p91 hypothetical protein phrog_2316 unknown function unknown function -1 78699 78983
AKP44766.1 CP011970_p92 hypothetical protein phrog_1828 unknown function unknown function -1 79063 79416
AKP44808.1 CP011970_p134 hypothetical protein phrog_14316 unknown function unknown function -1 99269 99409
AKP44692.1 CP011970_p18 hypothetical protein phrog_13585 unknown function unknown function 1 14588 14746
AKP44819.1 CP011970_p145 Doc-like protein phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover -1 106397 106765
AKP44685.1 CP011970_p11 hypothetical protein phrog_11509 unknown function unknown function 1 9758 10207
AKP44754.1 CP011970_p80 hypothetical protein phrog_9910 unknown function unknown function -1 71621 72052
AKP44813.1 CP011970_p139 hypothetical protein phrog_5735 unknown function unknown function -1 101966 102229
AKP44727.1 CP011970_p53 hypothetical protein phrog_12402 unknown function unknown function 1 53615 54457
AKP44785.1 CP011970_p111 hypothetical protein phrog_12360 unknown function unknown function -1 87407 87814
AKP44846.1 CP011970_p172 transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 121704 121895
AKP44695.1 CP011970_p21 hypothetical protein phrog_876 transcriptional repressor transcription regulation 1 15833 16009
AKP44836.1 CP011970_p162 hypothetical protein phrog_15893 unknown function unknown function -1 116642 117004
AKP44843.1 CP011970_p169 hypothetical protein phrog_5553 unknown function unknown function -1 119879 120112
AKP44806.1 CP011970_p132 hypothetical protein phrog_13805 unknown function unknown function -1 98602 98757
AKP44831.1 CP011970_p157 hypothetical protein phrog_15920 unknown function unknown function -1 114147 114752
AKP44686.1 CP011970_p12 hypothetical protein phrog_9724 unknown function unknown function 1 10207 11010
AKP44848.1 CP011970_p174 hypothetical protein phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 123412 124326
AKP44699.1 CP011970_p25 tape tail measure protein phrog_10871 tail length tape measure protein tail 1 20320 26850
AKP44717.1 CP011970_p43 endolysin phrog_8124 endolysin lysis 1 46234 46851
AKP44763.1 CP011970_p89 hypothetical protein phrog_9445 unknown function unknown function -1 78369 78503
AKP44693.1 CP011970_p19 hypothetical protein phrog_33071 unknown function unknown function -1 14893 15030
AKP44752.1 CP011970_p78 hypothetical protein phrog_22705 unknown function unknown function -1 71184 71411
AKP44739.1 CP011970_p65 hypothetical protein phrog_9257 unknown function unknown function -1 61944 62198
AKP44725.1 CP011970_p51 regulatory protein phrog_1077 transcriptional regulator transcription regulation -1 51098 51535
AKP44715.1 CP011970_p41 hypothetical protein phrog_2310 unknown function unknown function 1 45156 45326
AKP44688.1 CP011970_p14 phage tail protein phrog_33 distal tail protein Dit tail 1 11956 12759
AKP44677.1 CP011970_p3 phage structural protein phrog_2739 portal protein head and packaging 1 2655 4133
AKP44851.1 CP011970_p177 hypothetical protein phrog_14801 unknown function unknown function 1 125924 126172
AKP44800.1 CP011970_p126 hypothetical protein phrog_10929 unknown function unknown function -1 95907 96047
AKP44840.1 CP011970_p166 antirestriction protein phrog_2059 anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 118307 119020
AKP44679.1 CP011970_p5 hypothetical protein phrog_3313 unknown function unknown function 1 4334 5767
AKP44829.1 CP011970_p155 transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 112216 112584
AKP44775.1 CP011970_p101 hypothetical protein phrog_9643 unknown function unknown function -1 82657 82938
AKP44748.1 CP011970_p74 ERF superfamily protein phrog_2324 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 68385 68942
AKP44823.1 CP011970_p149 hypothetical protein phrog_2577 transposase integration and excision -1 109031 109432
AKP44696.1 CP011970_p22 phage antirepressor protein phrog_130 anti-repressor Ant transcription regulation 1 16132 17205
AKP44779.1 CP011970_p105 hypothetical protein phrog_9459 unknown function unknown function -1 84159 84626
AKP44704.1 CP011970_p30 peptidase phrog_11032 tail protein tail 1 30256 32178
AKP44733.1 CP011970_p59 hypothetical protein phrog_1233 unknown function unknown function -1 58155 58538
AKP44827.1 CP011970_p153 Helix-turn-helix domain protein phrog_8 transcriptional regulator transcription regulation -1 111463 111810
AKP44794.1 CP011970_p120 hypothetical protein phrog_10081 transposase integration and excision -1 93268 94044
AKP44743.1 CP011970_p69 hypothetical protein phrog_9215 unknown function unknown function -1 63886 64737
AKP44741.1 CP011970_p67 hypothetical protein phrog_246 NinI-like serine-threonine phosphatase other -1 62733 63359
AKP44740.1 CP011970_p66 hypothetical protein phrog_8268 spore protease other -1 62195 62722
AKP44774.1 CP011970_p100 hypothetical protein phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 81360 82613
AKP44701.1 CP011970_p27 hypothetical protein phrog_5620 unknown function unknown function -1 27619 27780
AKP44721.1 CP011970_p47 HTH-type transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 48730 49083
AKP44742.1 CP011970_p68 hypothetical protein phrog_13836 unknown function unknown function -1 63419 63862
AKP44815.1 CP011970_p141 hypothetical protein phrog_21859 unknown function unknown function -1 102647 102892
AKP44738.1 CP011970_p64 hypothetical protein phrog_9051 unknown function unknown function -1 61703 61960
AKP44760.1 CP011970_p86 hypothetical protein phrog_7644 unknown function unknown function -1 77316 77525
AKP44711.1 CP011970_p37 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 42385 42678
AKP44722.1 CP011970_p48 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 49221 49541
AKP44780.1 CP011970_p106 hypothetical protein phrog_19973 unknown function unknown function -1 84655 84765
AKP44826.1 CP011970_p152 hypothetical protein phrog_10897 unknown function unknown function -1 111044 111376
AKP44824.1 CP011970_p150 hypothetical protein phrog_4021 unknown function unknown function 1 109818 110117
AKP44732.1 CP011970_p58 guanylate kinase phrog_1815 guanylate kinase other -1 57583 58155
AKP44745.1 CP011970_p71 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 65135 66196
AKP44690.1 CP011970_p16 hypothetical protein phrog_11057 unknown function unknown function 1 13232 13672
AKP44842.1 CP011970_p168 hypothetical protein phrog_2329 unknown function unknown function -1 119596 119784
AKP44730.1 CP011970_p56 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 56526 57074
AKP44678.1 CP011970_p4 hypothetical protein phrog_13023 unknown function unknown function 1 4136 4327
AKP44841.1 CP011970_p167 transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 119172 119366
AKP44723.1 CP011970_p49 hypothetical protein phrog_8822 unknown function unknown function 1 49696 50604
AKP44720.1 CP011970_p46 tyrosine recombinase phrog_1 integrase integration and excision 1 47461 48399
AKP44697.1 CP011970_p23 hypothetical protein phrog_13544 unknown function unknown function 1 17304 18050
AKP44724.1 CP011970_p50 hypothetical protein phrog_18710 unknown function unknown function 1 50628 50957
AKP44818.1 CP011970_p144 hypothetical protein phrog_10004 unknown function unknown function -1 105274 106200
AKP44755.1 CP011970_p81 hypothetical protein phrog_9653 unknown function unknown function -1 72046 73167
AKP44784.1 CP011970_p110 hypothetical protein phrog_14231 unknown function unknown function -1 87069 87386
AKP44822.1 CP011970_p148 DNA binding subunit of transposase phrog_506 transposase integration and excision -1 107871 109034
AKP44812.1 CP011970_p138 hypothetical protein phrog_5735 unknown function unknown function -1 101616 101879
AKP44809.1 CP011970_p135 hypothetical protein phrog_18201 unknown function unknown function -1 99991 100149
AKP44683.1 CP011970_p9 hypothetical protein phrog_3853 unknown function unknown function 1 8078 8707
AKP44687.1 CP011970_p13 hypothetical protein phrog_2729 virion structural protein head and packaging 1 11057 11875
AKP44706.1 CP011970_p32 phage tail protein phrog_13479 tail fiber protein tail 1 32347 34425
AKP44798.1 CP011970_p124 hypothetical protein phrog_16529 unknown function unknown function -1 95217 95639
AKP44805.1 CP011970_p131 transcriptional terminator phrog_8 transcriptional regulator transcription regulation 1 98110 98463
AKP44761.1 CP011970_p87 methyltransferase subunit phrog_799 DNA methyltransferase other -1 77540 78142
AKP44726.1 CP011970_p52 integrase phrog_1 integrase integration and excision -1 52052 53164
AKP44680.1 CP011970_p6 hypothetical protein phrog_4147 unknown function unknown function 1 5782 6279
AKP44718.1 CP011970_p44 holin phrog_1129 holin lysis 1 46863 47114
AKP44772.1 CP011970_p98 hypothetical protein phrog_13060 unknown function unknown function -1 80659 80892
AKP44768.1 CP011970_p94 hypothetical protein phrog_12737 unknown function unknown function -1 79749 79892
AKP44793.1 CP011970_p119 hypothetical protein phrog_10532 unknown function unknown function -1 92874 93278
AKP44817.1 CP011970_p143 hypothetical protein phrog_13763 unknown function unknown function -1 103701 105269
AKP44796.1 CP011970_p122 RNA 2'-phosphotransferase phrog_5470 RNA 2'-phosphotransferase DNA, RNA and nucleotide metabolism -1 94482 95024
AKP44782.1 CP011970_p108 hypothetical protein phrog_506 transposase integration and excision -1 85177 86616
AKP44776.1 CP011970_p102 hypothetical protein phrog_2349 unknown function unknown function -1 83099 83545
AKP44773.1 CP011970_p99 hypothetical protein phrog_4334 unknown function unknown function -1 80919 81320
AKP44700.1 CP011970_p26 hypothetical protein phrog_5620 unknown function unknown function -1 27078 27257
AKP44855.1 CP011970_p181 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 129997 131196
AKP44803.1 CP011970_p129 antirepressor protein phrog_63 anti-repressor Ant transcription regulation -1 96904 97710
AKP44807.1 CP011970_p133 transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 98920 99258
AKP44797.1 CP011970_p123 hypothetical protein phrog_19102 unknown function unknown function -1 95062 95178
AKP44820.1 CP011970_p146 hypothetical protein phrog_15170 unknown function unknown function -1 106762 106935
AKP44828.1 CP011970_p154 transcriptional repressor phrog_8 transcriptional regulator transcription regulation -1 111816 112196
AKP44778.1 CP011970_p104 peptidyl-tRNA hydrolase phrog_1866 unknown function unknown function -1 83743 84123
AKP44753.1 CP011970_p79 hypothetical protein phrog_11508 unknown function unknown function -1 71456 71611
AKP44716.1 CP011970_p42 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 45407 46222
AKP44802.1 CP011970_p128 hypothetical protein phrog_12470 unknown function unknown function -1 96616 96840
AKP44751.1 CP011970_p77 hypothetical protein phrog_9810 unknown function unknown function -1 70598 71158
AKP44847.1 CP011970_p173 hypothetical protein phrog_18934 unknown function unknown function 1 122802 122990
AKP44713.1 CP011970_p39 hypothetical protein phrog_6782 tail fiber protein tail 1 42888 44789
AKP44757.1 CP011970_p83 hypothetical protein phrog_11322 unknown function unknown function -1 73562 73813
AKP44710.1 CP011970_p36 Glycine rich protein phrog_1589 unknown function unknown function 1 40686 42368
AKP44838.1 CP011970_p164 hypothetical protein phrog_12348 unknown function unknown function -1 117580 117816
AKP44781.1 CP011970_p107 hypothetical protein phrog_15987 unknown function unknown function -1 84752 84928
AKP44769.1 CP011970_p95 hypothetical protein phrog_13401 unknown function unknown function -1 79908 80045
AKP44708.1 CP011970_p34 hypothetical protein phrog_7546 unknown function unknown function 1 39727 40050