| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
DQ054536 |
Definition |
Lactococcus phage P008, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
NUCCORE |
Length |
28538 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
34.68 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AAY97836.1 | DQ054536_p34 | unknown | phrog_1508 | unknown function | unknown function | -1 | 19604 | 19732 |
| AAY97850.1 | DQ054536_p48 | unknown | phrog_9199 | unknown function | unknown function | -1 | 24954 | 25115 |
| AAY97809.1 | DQ054536_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4559 | 5515 |
| AAY97811.1 | DQ054536_p9 | unknown | phrog_1429 | virion structural protein | head and packaging | 1 | 5799 | 6113 |
| AAY97827.1 | DQ054536_p25 | unknown | phrog_1430 | unknown function | unknown function | -1 | 16998 | 17267 |
| AAY97832.1 | DQ054536_p30 | unknown | phrog_3365 | unknown function | unknown function | -1 | 18453 | 18656 |
| AAY97856.1 | DQ054536_p54 | unknown | phrog_1436 | unknown function | unknown function | 1 | 26894 | 27025 |
| AAY97826.1 | DQ054536_p24 | unknown | phrog_5087 | unknown function | unknown function | -1 | 16720 | 16977 |
| AAY97818.1 | DQ054536_p16 | tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9064 | 11814 |
| AAY97860.1 | DQ054536_p58 | unknown | phrog_6252 | unknown function | unknown function | 1 | 28298 | 28426 |
| AAY97857.1 | DQ054536_p55 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 27022 | 27504 |
| AAY97804.1 | DQ054536_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 779 | 2401 |
| AAY97814.1 | DQ054536_p12 | neck passage structure | phrog_16048 | virion structural protein | head and packaging | 1 | 6836 | 7273 |
| AAY97815.1 | DQ054536_p13 | capsid | phrog_1433 | major tail protein | tail | 1 | 7297 | 8202 |
| AAY97846.1 | DQ054536_p44 | unknown | phrog_2228 | unknown function | unknown function | -1 | 23144 | 23524 |
| AAY97859.1 | DQ054536_p57 | unknown | phrog_32191 | unknown function | unknown function | 1 | 27882 | 28004 |
| AAY97813.1 | DQ054536_p11 | unknown | phrog_1440 | virion structural protein | head and packaging | 1 | 6442 | 6807 |
| AAY97805.1 | DQ054536_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2391 | 2675 |
| AAY97847.1 | DQ054536_p45 | unknown | phrog_1405 | unknown function | unknown function | -1 | 23577 | 23840 |
| AAY97817.1 | DQ054536_p15 | unknown | phrog_1421 | virion structural protein | head and packaging | 1 | 8552 | 9064 |
| AAY97853.1 | DQ054536_p51 | unknown | phrog_6866 | unknown function | unknown function | 1 | 26169 | 26315 |
| AAY97803.1 | DQ054536_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 254 | 778 |
| AAY97844.1 | DQ054536_p42 | unknown | phrog_1449 | unknown function | unknown function | -1 | 22637 | 23044 |
| AAY97839.1 | DQ054536_p37 | unknown | phrog_1317 | unknown function | unknown function | -1 | 20676 | 21185 |
| AAY97820.1 | DQ054536_p18 | unknown | phrog_1432 | tail associated lysin | tail | 1 | 12710 | 13837 |
| AAY97838.1 | DQ054536_p36 | unknown | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 20172 | 20597 |
| AAY97816.1 | DQ054536_p14 | unknown | phrog_1420 | virion structural protein | head and packaging | 1 | 8257 | 8532 |
| AAY97828.1 | DQ054536_p26 | unknown | phrog_1415 | unknown function | unknown function | -1 | 17440 | 17787 |
| AAY97854.1 | DQ054536_p52 | unknown | phrog_1656 | unknown function | unknown function | -1 | 26443 | 26610 |
| AAY97849.1 | DQ054536_p47 | unknown | phrog_1284 | unknown function | unknown function | -1 | 24014 | 24910 |
| AAY97855.1 | DQ054536_p53 | unknown | phrog_1952 | unknown function | unknown function | 1 | 26761 | 26889 |
| AAY97823.1 | DQ054536_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 14935 | 15288 |
| AAY97840.1 | DQ054536_p38 | unknown | phrog_1295 | unknown function | unknown function | -1 | 21182 | 21397 |
| AAY97843.1 | DQ054536_p41 | unknown | phrog_5462 | unknown function | unknown function | -1 | 22324 | 22650 |
| AAY97812.1 | DQ054536_p10 | unknown | phrog_1484 | virion structural protein | head and packaging | 1 | 6110 | 6451 |
| AAY97829.1 | DQ054536_p27 | unknown | phrog_1441 | unknown function | unknown function | -1 | 17787 | 17954 |
| AAY97821.1 | DQ054536_p19 | unknown | phrog_1434 | unknown function | unknown function | 1 | 13827 | 14120 |
| AAY97830.1 | DQ054536_p28 | unknown | phrog_1820 | unknown function | unknown function | -1 | 17954 | 18142 |
| AAY97841.1 | DQ054536_p39 | unknown | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 21410 | 21769 |
| AAY97837.1 | DQ054536_p35 | unknown | phrog_1919 | unknown function | unknown function | -1 | 19792 | 20106 |
| AAY97835.1 | DQ054536_p33 | unknown | phrog_1225 | unknown function | unknown function | -1 | 19299 | 19604 |
| AAY97808.1 | DQ054536_p6 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4334 | 5515 |
| AAY97851.1 | DQ054536_p49 | unknown | phrog_7549 | unknown function | unknown function | -1 | 25162 | 25386 |
| AAY97824.1 | DQ054536_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 15285 | 15986 |
| AAY97831.1 | DQ054536_p29 | unknown | phrog_1509 | unknown function | unknown function | -1 | 18135 | 18389 |
| AAY97819.1 | DQ054536_p17 | unknown | phrog_1424 | tail protein | tail | 1 | 11814 | 12710 |
| AAY97822.1 | DQ054536_p20 | base plate protein | phrog_6779 | tail protein | tail | 1 | 14110 | 14913 |
| AAY97806.1 | DQ054536_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2688 | 3824 |
| AAY97825.1 | DQ054536_p23 | transglycosylase | phrog_3874 | transglycosylase | other | -1 | 16094 | 16630 |
| AAY97810.1 | DQ054536_p8 | unknown | phrog_1428 | head-tail connector protein | connector | 1 | 5536 | 5799 |
| AAY97858.1 | DQ054536_p56 | unknown | phrog_1652 | unknown function | unknown function | 1 | 27501 | 27668 |
| AAY97833.1 | DQ054536_p31 | unknown | phrog_22847 | unknown function | unknown function | -1 | 18717 | 18860 |
| AAY97845.1 | DQ054536_p43 | unknown | phrog_1632 | unknown function | unknown function | -1 | 22857 | 23147 |
| AAY97852.1 | DQ054536_p50 | unknown | phrog_2413 | unknown function | unknown function | -1 | 25912 | 26031 |
| AAY97842.1 | DQ054536_p40 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 21773 | 22327 |
| AAY97807.1 | DQ054536_p5 | capsid maturation protein | phrog_80 | head maturation protease | head and packaging | 1 | 3805 | 4341 |
| AAY97848.1 | DQ054536_p46 | unknown | phrog_3604 | unknown function | unknown function | -1 | 23812 | 24021 |
| AAY97834.1 | DQ054536_p32 | unknown | phrog_3530 | unknown function | unknown function | -1 | 18857 | 19297 |