Genomic map of Lactococcus virus P008 (DQ054536)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
DQ054536
Definition
Lactococcus phage P008, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
NUCCORE
Length
28538
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
34.68
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AAY97836.1 DQ054536_p34 unknown phrog_1508 unknown function unknown function -1 19604 19732
AAY97850.1 DQ054536_p48 unknown phrog_9199 unknown function unknown function -1 24954 25115
AAY97809.1 DQ054536_p7 structural protein phrog_1393 minor head protein head and packaging 1 4559 5515
AAY97811.1 DQ054536_p9 unknown phrog_1429 virion structural protein head and packaging 1 5799 6113
AAY97827.1 DQ054536_p25 unknown phrog_1430 unknown function unknown function -1 16998 17267
AAY97832.1 DQ054536_p30 unknown phrog_3365 unknown function unknown function -1 18453 18656
AAY97856.1 DQ054536_p54 unknown phrog_1436 unknown function unknown function 1 26894 27025
AAY97826.1 DQ054536_p24 unknown phrog_5087 unknown function unknown function -1 16720 16977
AAY97818.1 DQ054536_p16 tape-measure protein phrog_58 tail length tape measure protein tail 1 9064 11814
AAY97860.1 DQ054536_p58 unknown phrog_6252 unknown function unknown function 1 28298 28426
AAY97857.1 DQ054536_p55 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 27022 27504
AAY97804.1 DQ054536_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 779 2401
AAY97814.1 DQ054536_p12 neck passage structure phrog_16048 virion structural protein head and packaging 1 6836 7273
AAY97815.1 DQ054536_p13 capsid phrog_1433 major tail protein tail 1 7297 8202
AAY97846.1 DQ054536_p44 unknown phrog_2228 unknown function unknown function -1 23144 23524
AAY97859.1 DQ054536_p57 unknown phrog_32191 unknown function unknown function 1 27882 28004
AAY97813.1 DQ054536_p11 unknown phrog_1440 virion structural protein head and packaging 1 6442 6807
AAY97805.1 DQ054536_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2391 2675
AAY97847.1 DQ054536_p45 unknown phrog_1405 unknown function unknown function -1 23577 23840
AAY97817.1 DQ054536_p15 unknown phrog_1421 virion structural protein head and packaging 1 8552 9064
AAY97853.1 DQ054536_p51 unknown phrog_6866 unknown function unknown function 1 26169 26315
AAY97803.1 DQ054536_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 254 778
AAY97844.1 DQ054536_p42 unknown phrog_1449 unknown function unknown function -1 22637 23044
AAY97839.1 DQ054536_p37 unknown phrog_1317 unknown function unknown function -1 20676 21185
AAY97820.1 DQ054536_p18 unknown phrog_1432 tail associated lysin tail 1 12710 13837
AAY97838.1 DQ054536_p36 unknown phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 20172 20597
AAY97816.1 DQ054536_p14 unknown phrog_1420 virion structural protein head and packaging 1 8257 8532
AAY97828.1 DQ054536_p26 unknown phrog_1415 unknown function unknown function -1 17440 17787
AAY97854.1 DQ054536_p52 unknown phrog_1656 unknown function unknown function -1 26443 26610
AAY97849.1 DQ054536_p47 unknown phrog_1284 unknown function unknown function -1 24014 24910
AAY97855.1 DQ054536_p53 unknown phrog_1952 unknown function unknown function 1 26761 26889
AAY97823.1 DQ054536_p21 holin phrog_1379 unknown function unknown function 1 14935 15288
AAY97840.1 DQ054536_p38 unknown phrog_1295 unknown function unknown function -1 21182 21397
AAY97843.1 DQ054536_p41 unknown phrog_5462 unknown function unknown function -1 22324 22650
AAY97812.1 DQ054536_p10 unknown phrog_1484 virion structural protein head and packaging 1 6110 6451
AAY97829.1 DQ054536_p27 unknown phrog_1441 unknown function unknown function -1 17787 17954
AAY97821.1 DQ054536_p19 unknown phrog_1434 unknown function unknown function 1 13827 14120
AAY97830.1 DQ054536_p28 unknown phrog_1820 unknown function unknown function -1 17954 18142
AAY97841.1 DQ054536_p39 unknown phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21410 21769
AAY97837.1 DQ054536_p35 unknown phrog_1919 unknown function unknown function -1 19792 20106
AAY97835.1 DQ054536_p33 unknown phrog_1225 unknown function unknown function -1 19299 19604
AAY97808.1 DQ054536_p6 structural protein phrog_1393 minor head protein head and packaging 1 4334 5515
AAY97851.1 DQ054536_p49 unknown phrog_7549 unknown function unknown function -1 25162 25386
AAY97824.1 DQ054536_p22 lysin phrog_670 endolysin lysis 1 15285 15986
AAY97831.1 DQ054536_p29 unknown phrog_1509 unknown function unknown function -1 18135 18389
AAY97819.1 DQ054536_p17 unknown phrog_1424 tail protein tail 1 11814 12710
AAY97822.1 DQ054536_p20 base plate protein phrog_6779 tail protein tail 1 14110 14913
AAY97806.1 DQ054536_p4 portal protein phrog_12 portal protein head and packaging 1 2688 3824
AAY97825.1 DQ054536_p23 transglycosylase phrog_3874 transglycosylase other -1 16094 16630
AAY97810.1 DQ054536_p8 unknown phrog_1428 head-tail connector protein connector 1 5536 5799
AAY97858.1 DQ054536_p56 unknown phrog_1652 unknown function unknown function 1 27501 27668
AAY97833.1 DQ054536_p31 unknown phrog_22847 unknown function unknown function -1 18717 18860
AAY97845.1 DQ054536_p43 unknown phrog_1632 unknown function unknown function -1 22857 23147
AAY97852.1 DQ054536_p50 unknown phrog_2413 unknown function unknown function -1 25912 26031
AAY97842.1 DQ054536_p40 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 21773 22327
AAY97807.1 DQ054536_p5 capsid maturation protein phrog_80 head maturation protease head and packaging 1 3805 4341
AAY97848.1 DQ054536_p46 unknown phrog_3604 unknown function unknown function -1 23812 24021
AAY97834.1 DQ054536_p32 unknown phrog_3530 unknown function unknown function -1 18857 19297