| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
DQ113772 |
Definition |
Streptococcus pneumoniae bacteriophage MM1 1998, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
38893 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
38.1 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AAZ82421.1 | DQ113772_p10 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5019 | 5726 |
| AAZ82437.1 | DQ113772_p26 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 12291 | 12638 |
| AAZ82435.1 | DQ113772_p24 | hypothetical protein | phrog_2003 | unknown function | unknown function | 1 | 11816 | 12103 |
| AAZ82443.1 | DQ113772_p32 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15994 | 17304 |
| AAZ82446.1 | DQ113772_p35 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 19088 | 20239 |
| AAZ82452.1 | DQ113772_p41 | minor capsid protein | phrog_556 | minor head protein | head and packaging | 1 | 22880 | 23224 |
| AAZ82456.1 | DQ113772_p45 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 24643 | 25212 |
| AAZ82424.1 | DQ113772_p13 | ssDNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 6909 | 7454 |
| AAZ82412.1 | DQ113772_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 103 | 1230 |
| AAZ82444.1 | DQ113772_p33 | minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 17317 | 18885 |
| AAZ82455.1 | DQ113772_p44 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 24142 | 24630 |
| AAZ82434.1 | DQ113772_p23 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 11319 | 11816 |
| AAZ82453.1 | DQ113772_p42 | minor capsid protein | phrog_913 | minor head protein | head and packaging | 1 | 23224 | 23631 |
| AAZ82428.1 | DQ113772_p17 | hypothetical protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 8929 | 9363 |
| AAZ82448.1 | DQ113772_p37 | minor capsid protein | phrog_840 | major head protein | head and packaging | 1 | 20959 | 21840 |
| AAZ82457.1 | DQ113772_p46 | minor tail protein, tape measure protein | phrog_1686 | tail length tape measure protein | tail | 1 | 25205 | 28486 |
| AAZ82441.1 | DQ113772_p30 | hypothetical protein | phrog_5057 | unknown function | unknown function | 1 | 14599 | 15345 |
| AAZ82433.1 | DQ113772_p22 | hypothetical protein | phrog_834 | unknown function | unknown function | 1 | 11000 | 11317 |
| AAZ82438.1 | DQ113772_p27 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 12827 | 13069 |
| AAZ82440.1 | DQ113772_p29 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 13524 | 14618 |
| AAZ82419.1 | DQ113772_p8 | hypothetical protein | phrog_13947 | unknown function | unknown function | 1 | 3985 | 4509 |
| AAZ82459.1 | DQ113772_p48 | antireceptor | phrog_588 | tail fiber protein and host specificity | tail | 1 | 29999 | 34555 |
| AAZ82454.1 | DQ113772_p43 | tail shaft protein | phrog_820 | major tail protein | tail | 1 | 23628 | 24077 |
| AAZ82431.1 | DQ113772_p20 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 10342 | 10743 |
| AAZ82427.1 | DQ113772_p16 | hypothetical protein | phrog_3947 | unknown function | unknown function | 1 | 8672 | 8875 |
| AAZ82422.1 | DQ113772_p11 | DNA-binding protein | phrog_674 | unknown function | unknown function | 1 | 5729 | 6721 |
| AAZ82429.1 | DQ113772_p18 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 9365 | 10102 |
| AAZ82458.1 | DQ113772_p47 | minor structural protein | phrog_202 | distal tail protein Dit | tail | 1 | 28483 | 29997 |
| AAZ82451.1 | DQ113772_p40 | minor capsid protein | phrog_793 | head-tail adaptor | connector | 1 | 22509 | 22880 |
| AAZ82439.1 | DQ113772_p28 | hypothetical protein | phrog_3511 | unknown function | unknown function | 1 | 13066 | 13458 |
| AAZ82450.1 | DQ113772_p39 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 22127 | 22519 |
| AAZ82445.1 | DQ113772_p34 | hypothetical protein | phrog_3755 | unknown function | unknown function | 1 | 18818 | 19045 |
| AAZ82420.1 | DQ113772_p9 | hypothetical protein | phrog_2715 | unknown function | unknown function | 1 | 4537 | 5013 |
| AAZ82425.1 | DQ113772_p14 | C5 methyltransferase alpha subunit | phrog_116 | DNA methyltransferase | other | 1 | 7480 | 8637 |
| AAZ82430.1 | DQ113772_p19 | hypothetical protein | phrog_774 | unknown function | unknown function | 1 | 10119 | 10331 |
| AAZ82460.1 | DQ113772_p49 | minor tail protein | phrog_372 | tail protein | tail | 1 | 34566 | 36644 |
| AAZ82417.1 | DQ113772_p6 | hypothetical protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 3140 | 3406 |
| AAZ82414.1 | DQ113772_p3 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 1713 | 2093 |
| AAZ82436.1 | DQ113772_p25 | hypothetical protein | phrog_4667 | unknown function | unknown function | 1 | 12103 | 12276 |
| AAZ82426.1 | DQ113772_p15 | C5 methyltransferase beta subunit | phrog_16143 | DNA methyltransferase | other | 1 | 7631 | 8056 |
| AAZ82423.1 | DQ113772_p12 | hypothetical protein | phrog_4139 | unknown function | unknown function | 1 | 6743 | 6919 |
| AAZ82418.1 | DQ113772_p7 | hypothetical protein | phrog_2273 | unknown function | unknown function | 1 | 3638 | 3904 |
| AAZ82461.1 | DQ113772_p50 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 36698 | 36967 |
| AAZ82416.1 | DQ113772_p5 | repressor protein | phrog_1337 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2774 | 2965 |
| AAZ82432.1 | DQ113772_p21 | hypothetical protein | phrog_4706 | unknown function | unknown function | 1 | 10745 | 10951 |
| AAZ82442.1 | DQ113772_p31 | hypothetical protein | phrog_2412 | unknown function | unknown function | 1 | 15549 | 16004 |
| AAZ82413.1 | DQ113772_p2 | hypothetical protein | phrog_9859 | unknown function | unknown function | -1 | 1349 | 1699 |
| AAZ82415.1 | DQ113772_p4 | phage repressor protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2115 | 2477 |
| AAZ82447.1 | DQ113772_p36 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 20378 | 20941 |
| AAZ82449.1 | DQ113772_p38 | hypothetical protein | phrog_2910 | unknown function | unknown function | 1 | 21851 | 22084 |
| AAZ82464.1 | DQ113772_p53 | lytic amidase | phrog_1110 | endolysin | lysis | 1 | 37733 | 38689 |
| AAZ82463.1 | DQ113772_p52 | holin | phrog_608 | holin | lysis | 1 | 37397 | 37729 |
| AAZ82462.1 | DQ113772_p51 | holin | phrog_199 | holin | lysis | 1 | 36977 | 37393 |