Genomic map of Lactococcus phage phismq86 (DQ394810)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
DQ394810
Definition
Lactococcus phage phismq86, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
33641
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
35.97
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ABD63867.1 DQ394810_p19 unknown phrog_16505 unknown function unknown function 1 9588 9746
ABD63866.1 DQ394810_p18 unknown phrog_7446 unknown function unknown function 1 9405 9575
ABD63860.1 DQ394810_p12 unknown phrog_674 unknown function unknown function 1 5941 7035
ABD63871.1 DQ394810_p23 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 10841 11260
ABD63876.1 DQ394810_p28 unknown phrog_2275 unknown function unknown function 1 12947 13255
ABD63894.1 DQ394810_p46 receptor binding protein phrog_6468 tail fiber protein; host specificity tail 1 27802 30885
ABD63889.1 DQ394810_p41 major capsid protein phrog_820 major tail protein tail 1 22004 22480
ABD63856.1 DQ394810_p8 unknown phrog_5998 unknown function unknown function 1 4566 4688
ABD63891.1 DQ394810_p43 unknown phrog_706 unknown function unknown function 1 22960 23667
ABD63895.1 DQ394810_p47 unknown phrog_8250 unknown function unknown function 1 30897 31133
ABD63872.1 DQ394810_p24 unknown phrog_6209 unknown function unknown function 1 11264 11623
ABD63865.1 DQ394810_p17 unknown phrog_5080 unknown function unknown function 1 9190 9396
ABD63880.1 DQ394810_p32 portal protein phrog_12 portal protein head and packaging 1 15810 17339
ABD63869.1 DQ394810_p21 unknown phrog_121 unknown function unknown function 1 9940 10482
ABD63890.1 DQ394810_p42 unknown phrog_1061 unknown function unknown function 1 22537 22944
ABD63864.1 DQ394810_p16 unknown phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8672 9082
ABD63898.1 DQ394810_p50 endolysin phrog_998 endolysin lysis 1 31808 32587
ABD63877.1 DQ394810_p29 unknown phrog_2198 Alt-like transcription activator transcription regulation 1 13332 13721
ABD63870.1 DQ394810_p22 unknown phrog_10155 unknown function unknown function 1 10479 10844
ABD63892.1 DQ394810_p44 tape measure protein phrog_58 tail length tape measure protein tail 1 23657 26266
ABD63851.1 DQ394810_p3 unknown phrog_87 metallo-protease other -1 2208 2792
ABD63888.1 DQ394810_p40 unknown phrog_913 minor head protein head and packaging 1 21559 21993
ABD63859.1 DQ394810_p11 sak phrog_252 Bet-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5229 5966
ABD63878.1 DQ394810_p30 unknown phrog_309 terminase small subunit head and packaging 1 13892 14365
ABD63858.1 DQ394810_p10 unknown phrog_4416 transcriptional regulator transcription regulation 1 4946 5122
ABD63881.1 DQ394810_p33 unknown phrog_2468 head morphogenesis head and packaging 1 17332 18162
ABD63885.1 DQ394810_p37 unknown phrog_541 head-tail adaptor connector 1 20498 20899
ABD63863.1 DQ394810_p15 unknown phrog_23225 unknown function unknown function 1 8303 8659
ABD63887.1 DQ394810_p39 unknown phrog_556 minor head protein head and packaging 1 21230 21559
ABD63850.1 DQ394810_p2 unknown phrog_7115 unknown function unknown function -1 1613 2152
ABD63884.1 DQ394810_p36 unknown phrog_215 structural protein with Ig domain head and packaging 1 20188 20424
ABD63857.1 DQ394810_p9 unknown phrog_5257 unknown function unknown function 1 4701 4949
ABD63854.1 DQ394810_p6 antirepressor phrog_373 anti-repressor transcription regulation 1 3682 4371
ABD63883.1 DQ394810_p35 unknown phrog_1623 virion structural protein head and packaging 1 19242 20159
ABD63875.1 DQ394810_p27 unknown phrog_2670 unknown function unknown function 1 12603 12818
ABD63896.1 DQ394810_p48 unknown phrog_1893 unknown function unknown function 1 31146 31496
ABD63893.1 DQ394810_p45 tail protein phrog_202 distal tail protein Dit tail 1 26276 27805
ABD63882.1 DQ394810_p34 unknown phrog_3017 head maturation protease head and packaging 1 18178 19227
ABD63855.1 DQ394810_p7 unknown phrog_12961 excisionase integration and excision 1 4387 4569
ABD63899.1 DQ394810_p51 unknown singleton unknown function unknown function 1 32739 33521
ABD63874.1 DQ394810_p26 unknown phrog_7406 unknown function unknown function 1 12388 12606
ABD63853.1 DQ394810_p5 repressor phrog_3 transcriptional repressor transcription regulation 1 3390 3623
ABD63852.1 DQ394810_p4 repressor phrog_8 transcriptional regulator transcription regulation -1 2803 3213
ABD63868.1 DQ394810_p20 excisionase phrog_16544 excisionase integration and excision 1 9765 9947
ABD63886.1 DQ394810_p38 unknown phrog_793 head-tail adaptor connector 1 20889 21233
ABD63862.1 DQ394810_p14 unknown singleton unknown function unknown function 1 8221 8424
ABD63879.1 DQ394810_p31 terminase large subunit phrog_38 terminase large subunit head and packaging 1 14346 15797
ABD63849.1 DQ394810_p1 integrase phrog_95 integrase integration and excision -1 30 1562
ABD63873.1 DQ394810_p25 unknown phrog_1071 DNA methyltransferase other 1 11650 12369
ABD63897.1 DQ394810_p49 holin phrog_263 holin lysis 1 31509 31808
ABD63861.1 DQ394810_p13 replicase phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 7325 8224