| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
DQ394810 |
Definition |
Lactococcus phage phismq86, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
33641 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
35.97 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ABD63867.1 | DQ394810_p19 | unknown | phrog_16505 | unknown function | unknown function | 1 | 9588 | 9746 |
| ABD63866.1 | DQ394810_p18 | unknown | phrog_7446 | unknown function | unknown function | 1 | 9405 | 9575 |
| ABD63860.1 | DQ394810_p12 | unknown | phrog_674 | unknown function | unknown function | 1 | 5941 | 7035 |
| ABD63871.1 | DQ394810_p23 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 10841 | 11260 |
| ABD63876.1 | DQ394810_p28 | unknown | phrog_2275 | unknown function | unknown function | 1 | 12947 | 13255 |
| ABD63894.1 | DQ394810_p46 | receptor binding protein | phrog_6468 | tail fiber protein; host specificity | tail | 1 | 27802 | 30885 |
| ABD63889.1 | DQ394810_p41 | major capsid protein | phrog_820 | major tail protein | tail | 1 | 22004 | 22480 |
| ABD63856.1 | DQ394810_p8 | unknown | phrog_5998 | unknown function | unknown function | 1 | 4566 | 4688 |
| ABD63891.1 | DQ394810_p43 | unknown | phrog_706 | unknown function | unknown function | 1 | 22960 | 23667 |
| ABD63895.1 | DQ394810_p47 | unknown | phrog_8250 | unknown function | unknown function | 1 | 30897 | 31133 |
| ABD63872.1 | DQ394810_p24 | unknown | phrog_6209 | unknown function | unknown function | 1 | 11264 | 11623 |
| ABD63865.1 | DQ394810_p17 | unknown | phrog_5080 | unknown function | unknown function | 1 | 9190 | 9396 |
| ABD63880.1 | DQ394810_p32 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 15810 | 17339 |
| ABD63869.1 | DQ394810_p21 | unknown | phrog_121 | unknown function | unknown function | 1 | 9940 | 10482 |
| ABD63890.1 | DQ394810_p42 | unknown | phrog_1061 | unknown function | unknown function | 1 | 22537 | 22944 |
| ABD63864.1 | DQ394810_p16 | unknown | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8672 | 9082 |
| ABD63898.1 | DQ394810_p50 | endolysin | phrog_998 | endolysin | lysis | 1 | 31808 | 32587 |
| ABD63877.1 | DQ394810_p29 | unknown | phrog_2198 | Alt-like transcription activator | transcription regulation | 1 | 13332 | 13721 |
| ABD63870.1 | DQ394810_p22 | unknown | phrog_10155 | unknown function | unknown function | 1 | 10479 | 10844 |
| ABD63892.1 | DQ394810_p44 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 23657 | 26266 |
| ABD63851.1 | DQ394810_p3 | unknown | phrog_87 | metallo-protease | other | -1 | 2208 | 2792 |
| ABD63888.1 | DQ394810_p40 | unknown | phrog_913 | minor head protein | head and packaging | 1 | 21559 | 21993 |
| ABD63859.1 | DQ394810_p11 | sak | phrog_252 | Bet-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5229 | 5966 |
| ABD63878.1 | DQ394810_p30 | unknown | phrog_309 | terminase small subunit | head and packaging | 1 | 13892 | 14365 |
| ABD63858.1 | DQ394810_p10 | unknown | phrog_4416 | transcriptional regulator | transcription regulation | 1 | 4946 | 5122 |
| ABD63881.1 | DQ394810_p33 | unknown | phrog_2468 | head morphogenesis | head and packaging | 1 | 17332 | 18162 |
| ABD63885.1 | DQ394810_p37 | unknown | phrog_541 | head-tail adaptor | connector | 1 | 20498 | 20899 |
| ABD63863.1 | DQ394810_p15 | unknown | phrog_23225 | unknown function | unknown function | 1 | 8303 | 8659 |
| ABD63887.1 | DQ394810_p39 | unknown | phrog_556 | minor head protein | head and packaging | 1 | 21230 | 21559 |
| ABD63850.1 | DQ394810_p2 | unknown | phrog_7115 | unknown function | unknown function | -1 | 1613 | 2152 |
| ABD63884.1 | DQ394810_p36 | unknown | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 20188 | 20424 |
| ABD63857.1 | DQ394810_p9 | unknown | phrog_5257 | unknown function | unknown function | 1 | 4701 | 4949 |
| ABD63854.1 | DQ394810_p6 | antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 3682 | 4371 |
| ABD63883.1 | DQ394810_p35 | unknown | phrog_1623 | virion structural protein | head and packaging | 1 | 19242 | 20159 |
| ABD63875.1 | DQ394810_p27 | unknown | phrog_2670 | unknown function | unknown function | 1 | 12603 | 12818 |
| ABD63896.1 | DQ394810_p48 | unknown | phrog_1893 | unknown function | unknown function | 1 | 31146 | 31496 |
| ABD63893.1 | DQ394810_p45 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 26276 | 27805 |
| ABD63882.1 | DQ394810_p34 | unknown | phrog_3017 | head maturation protease | head and packaging | 1 | 18178 | 19227 |
| ABD63855.1 | DQ394810_p7 | unknown | phrog_12961 | excisionase | integration and excision | 1 | 4387 | 4569 |
| ABD63899.1 | DQ394810_p51 | unknown | singleton | unknown function | unknown function | 1 | 32739 | 33521 |
| ABD63874.1 | DQ394810_p26 | unknown | phrog_7406 | unknown function | unknown function | 1 | 12388 | 12606 |
| ABD63853.1 | DQ394810_p5 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3390 | 3623 |
| ABD63852.1 | DQ394810_p4 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 2803 | 3213 |
| ABD63868.1 | DQ394810_p20 | excisionase | phrog_16544 | excisionase | integration and excision | 1 | 9765 | 9947 |
| ABD63886.1 | DQ394810_p38 | unknown | phrog_793 | head-tail adaptor | connector | 1 | 20889 | 21233 |
| ABD63862.1 | DQ394810_p14 | unknown | singleton | unknown function | unknown function | 1 | 8221 | 8424 |
| ABD63879.1 | DQ394810_p31 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 14346 | 15797 |
| ABD63849.1 | DQ394810_p1 | integrase | phrog_95 | integrase | integration and excision | -1 | 30 | 1562 |
| ABD63873.1 | DQ394810_p25 | unknown | phrog_1071 | DNA methyltransferase | other | 1 | 11650 | 12369 |
| ABD63897.1 | DQ394810_p49 | holin | phrog_263 | holin | lysis | 1 | 31509 | 31808 |
| ABD63861.1 | DQ394810_p13 | replicase | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 7325 | 8224 |