Genomic map of Clostridium virus phiC2 (DQ466086)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
DQ466086
Definition
Clostridium phage phiC2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus.
DB of origin
NUCCORE
Length
56538
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
82
%GC
28.72
Number of singletons
1
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ABE99514.1 DQ466086_p51 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 39553 39699
ABE99472.1 DQ466086_p9 hypothetical protein phrog_132 head-tail adaptor connector 1 6854 7255
ABE99538.1 DQ466086_p75 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 51407 51814
ABE99478.1 DQ466086_p15 hypothetical protein phrog_3466 unknown function unknown function 1 10476 10733
ABE99468.1 DQ466086_p5 hypothetical protein phrog_1865 unknown function unknown function 1 4871 5071
ABE99534.1 DQ466086_p71 hypothetical protein phrog_2462 unknown function unknown function 1 48631 48840
ABE99505.1 DQ466086_p42 transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 34054 34380
ABE99529.1 DQ466086_p66 hypothetical protein phrog_7118 unknown function unknown function 1 46055 46537
ABE99491.1 DQ466086_p28 hypothetical protein phrog_7154 unknown function unknown function 1 24008 24199
ABE99470.1 DQ466086_p7 main capsid protein phrog_422 major head protein head and packaging 1 5712 6611
ABE99502.1 DQ466086_p39 hypothetical protein phrog_6174 unknown function unknown function -1 30120 31706
ABE99532.1 DQ466086_p69 hypothetical protein phrog_8001 unknown function unknown function 1 47052 47369
ABE99501.1 DQ466086_p38 hypothetical protein phrog_5951 unknown function unknown function 1 29538 30056
ABE99483.1 DQ466086_p20 tail tape measure protein phrog_1068 tail length tape measure protein tail 1 13409 15697
ABE99482.1 DQ466086_p19 hypothetical protein phrog_2546 unknown function unknown function 1 12771 13331
ABE99499.1 DQ466086_p36 amidase/endolysin phrog_435 endolysin lysis 1 28117 28929
ABE99537.1 DQ466086_p74 hypothetical protein phrog_4572 unknown function unknown function 1 50322 50675
ABE99496.1 DQ466086_p33 hypothetical protein phrog_1193 hemolysin other 1 26407 26637
ABE99507.1 DQ466086_p44 integrase phrog_1 integrase integration and excision -1 35184 36398
ABE99466.1 DQ466086_p3 portal protein phrog_64 portal protein head and packaging 1 2030 3469
ABE99487.1 DQ466086_p24 hypothetical protein phrog_6 baseplate wedge subunit tail 1 19011 20048
ABE99508.1 DQ466086_p45 hypothetical protein phrog_8194 unknown function unknown function -1 36488 36703
ABE99492.1 DQ466086_p29 hypothetical protein phrog_3361 unknown function unknown function 1 24213 24845
ABE99488.1 DQ466086_p25 hypothetical protein phrog_521 tail protein tail 1 20041 20658
ABE99467.1 DQ466086_p4 head morphogenesis protein phrog_115 minor head protein head and packaging 1 3459 4856
ABE99473.1 DQ466086_p10 hypothetical protein phrog_615 head-tail adaptor connector 1 7249 7596
ABE99498.1 DQ466086_p35 abortive infection bacteriophage resistance protein ORF 37 phrog_2158 abortive infection resistance protein moron, auxiliary metabolic gene and host takeover 1 27175 28038
ABE99516.1 DQ466086_p53 hypothetical protein phrog_9735 unknown function unknown function 1 40389 40769
ABE99511.1 DQ466086_p48 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 38063 38239
ABE99479.1 DQ466086_p16 hypothetical protein phrog_389 tail protein XkdN-like tail 1 10738 11178
ABE99481.1 DQ466086_p18 hypothetical protein phrog_806 unknown function unknown function 1 12102 12629
ABE99494.1 DQ466086_p31 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 25882 26187
ABE99497.1 DQ466086_p34 holin phrog_1129 holin lysis 1 26657 26914
ABE99504.1 DQ466086_p41 hypothetical protein phrog_2569 unknown function unknown function -1 32905 33093
ABE99545.1 DQ466086_p82 hypothetical protein phrog_4083 unknown function unknown function 1 55572 55799
ABE99506.1 DQ466086_p43 transcriptional regulator phrog_1077 transcriptional regulator transcription regulation 1 34490 34873
ABE99471.1 DQ466086_p8 hypothetical protein phrog_1378 unknown function unknown function 1 6611 6844
ABE99517.1 DQ466086_p54 hypothetical protein phrog_5079 unknown function unknown function -1 40759 40911
ABE99509.1 DQ466086_p46 cI repressor phrog_3 transcriptional repressor transcription regulation -1 36753 36974
ABE99485.1 DQ466086_p22 hydrolase phrog_400 tail protein tail 1 16408 18300
ABE99518.1 DQ466086_p55 repressor phrog_3 transcriptional repressor transcription regulation 1 40970 41167
ABE99510.1 DQ466086_p47 repressor phrog_8 transcriptional regulator transcription regulation -1 37432 37827
ABE99500.1 DQ466086_p37 hypothetical protein phrog_5384 unknown function unknown function 1 29010 29372
ABE99503.1 DQ466086_p40 DUF955 phrog_87 metallo-protease other -1 31682 32203
ABE99475.1 DQ466086_p12 hypothetical protein phrog_525 unknown function unknown function 1 8014 8451
ABE99533.1 DQ466086_p70 cytosine-C5 specific DNA methylase phrog_116 DNA methyltransferase other 1 47528 48478
ABE99486.1 DQ466086_p23 hypothetical protein phrog_579 unknown function unknown function 1 18314 18574
ABE99527.1 DQ466086_p64 hypothetical protein phrog_3253 unknown function unknown function 1 45364 45537
ABE99542.1 DQ466086_p79 hypothetical protein phrog_3291 unknown function unknown function 1 54081 54275
ABE99535.1 DQ466086_p72 hypothetical protein phrog_1974 unknown function unknown function 1 48852 49856
ABE99490.1 DQ466086_p27 hypothetical protein phrog_3321 rhodanese-related sulfurtransferase other 1 23445 23792
ABE99531.1 DQ466086_p68 hypothetical protein phrog_2961 unknown function unknown function 1 46916 47050
ABE99524.1 DQ466086_p61 Gp157-like protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 43285 43794
ABE99541.1 DQ466086_p78 hypothetical protein singleton unknown function unknown function -1 53341 53388
ABE99528.1 DQ466086_p65 single strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 45553 45960
ABE99489.1 DQ466086_p26 tail fiber protein phrog_1162 tail fiber protein tail 1 20670 21695
ABE99477.1 DQ466086_p14 core tail phrog_365 tail protein tail 1 9953 10423
ABE99530.1 DQ466086_p67 hypothetical protein phrog_1310 unknown function unknown function 1 46551 46916
ABE99480.1 DQ466086_p17 hypothetical protein phrog_1664 unknown function unknown function 1 11809 12042
ABE99476.1 DQ466086_p13 sheath tail protein phrog_279 tail sheath tail 1 8621 9931
ABE99519.1 DQ466086_p56 hypothetical protein phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 41197 41640
ABE99522.1 DQ466086_p59 hypothetical protein phrog_1564 unknown function unknown function 1 42562 42789
ABE99525.1 DQ466086_p62 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43804 44412
ABE99526.1 DQ466086_p63 DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 44413 45303
ABE99495.1 DQ466086_p32 hypothetical protein phrog_1243 unknown function unknown function 1 26187 26369
ABE99512.1 DQ466086_p49 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 38239 39027
ABE99521.1 DQ466086_p58 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 42404 42562
ABE99474.1 DQ466086_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7596 8021
ABE99464.1 DQ466086_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 101 793
ABE99469.1 DQ466086_p6 scaffold protein phrog_194 head scaffolding protein head and packaging 1 5137 5700
ABE99484.1 DQ466086_p21 LysM phrog_380 endolysin lysis 1 15714 16415
ABE99540.1 DQ466086_p77 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 52867 53355
ABE99523.1 DQ466086_p60 hypothetical protein phrog_2219 unknown function unknown function 1 42887 43201
ABE99539.1 DQ466086_p76 hypothetical protein phrog_463 anti-repressor transcription regulation 1 51916 52764
ABE99544.1 DQ466086_p81 hypothetical protein phrog_2211 unknown function unknown function -1 55131 55448
ABE99536.1 DQ466086_p73 hypothetical protein phrog_32060 unknown function unknown function 1 50097 50267
ABE99465.1 DQ466086_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 771 2024
ABE99515.1 DQ466086_p52 antirepressor phrog_463 anti-repressor transcription regulation 1 39692 40330
ABE99520.1 DQ466086_p57 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 42091 42270
ABE99493.1 DQ466086_p30 hypothetical protein phrog_6715 unknown function unknown function 1 25313 25858
ABE99543.1 DQ466086_p80 hypothetical protein phrog_1758 acetyltransferase other 1 54308 54886
ABE99513.1 DQ466086_p50 hypothetical protein phrog_228 Arc-like repressor transcription regulation -1 39233 39436